Wall clock time and date at job start Mon Mar 30 2020 00:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99777 * 2 1 4 4 C 1.50700 * 109.46705 * 180.02562 * 3 2 1 5 5 C 1.38422 * 119.92285 * 90.00900 * 4 3 2 6 6 C 1.38377 * 120.30404 * 180.02562 * 5 4 3 7 7 C 1.37939 * 120.15283 * 359.97438 * 6 5 4 8 8 C 1.39643 * 119.84775 * 359.97438 * 7 6 5 9 9 C 1.47852 * 120.15397 * 179.97438 * 8 7 6 10 10 C 1.39303 * 120.77974 * 129.99868 * 9 8 7 11 11 N 1.31678 * 120.66035 * 179.72464 * 10 9 8 12 12 C 1.32206 * 122.50424 * 0.28037 * 11 10 9 13 13 C 1.36497 * 121.50420 * 0.02562 * 12 11 10 14 14 C 1.41117 * 119.10411 * 359.97438 * 13 12 11 15 15 C 1.40933 * 121.10119 * 180.02562 * 14 13 12 16 16 H 1.08009 * 119.99781 * 150.51297 * 15 14 13 17 17 C 1.40184 * 120.00405 * 330.50624 * 15 14 13 18 18 N 1.30679 * 119.99832 * 162.01791 * 17 15 14 19 19 Si 1.86798 * 119.99779 * 342.02059 * 17 15 14 20 20 H 1.48496 * 109.47220 * 95.33150 * 19 17 15 21 21 H 1.48499 * 109.46914 * 215.33162 * 19 17 15 22 22 H 1.48500 * 109.47079 * 335.32911 * 19 17 15 23 23 C 1.37897 * 119.92790 * 270.23715 * 4 3 2 24 24 H 1.09003 * 109.47136 * 299.99429 * 1 2 3 25 25 H 1.09001 * 109.47508 * 59.99111 * 1 2 3 26 26 H 1.09002 * 109.47337 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46619 * 60.01038 * 3 2 1 28 28 H 1.08993 * 109.47326 * 300.00300 * 3 2 1 29 29 H 1.08000 * 119.84781 * 359.97438 * 5 4 3 30 30 H 1.08003 * 119.92624 * 179.97438 * 6 5 4 31 31 H 1.08005 * 120.07455 * 179.97438 * 7 6 5 32 32 H 1.08004 * 119.66947 * 0.02562 * 10 9 8 33 33 H 1.07995 * 119.24577 * 179.97438 * 12 11 10 34 34 H 1.07997 * 120.44434 * 180.02562 * 13 12 11 35 35 H 0.96998 * 120.00013 * 179.97438 * 18 17 15 36 36 H 1.08004 * 120.07478 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 -0.0006 5 6 4.2003 1.1323 -1.2006 6 6 5.5797 1.0225 -1.2104 7 6 6.2788 0.9667 -0.0226 8 6 5.5913 1.0219 1.1916 9 6 6.3338 0.9621 2.4688 10 6 6.1029 1.9004 3.4722 11 7 6.7616 1.8417 4.6109 12 6 7.6664 0.9108 4.8611 13 6 7.9721 -0.0518 3.9429 14 6 7.3050 -0.0508 2.6994 15 6 7.5873 -1.0251 1.7210 16 1 6.8197 -1.3296 1.0248 17 6 8.8644 -1.5989 1.6512 18 7 9.0416 -2.7224 1.0077 19 14 10.3128 -0.7576 2.4781 20 1 10.5196 -1.3413 3.8278 21 1 11.5353 -0.9584 1.6593 22 1 10.0348 0.6957 2.6045 23 6 4.1984 1.1270 1.1942 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6886 1.8463 0.8901 28 1 1.6885 1.8464 -0.8899 29 1 3.6579 1.1752 -2.1335 30 1 6.1102 0.9803 -2.1502 31 1 7.3553 0.8806 -0.0317 32 1 5.3728 2.6809 3.3166 33 1 8.1759 0.9125 5.8133 34 1 8.7139 -0.8045 4.1654 35 1 9.9254 -3.1193 0.9590 36 1 3.6601 1.1652 2.1297 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239936949.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:33 Heat of formation + Delta-G solvation = -2.329161 kcal Electronic energy + Delta-G solvation = -19566.918291 eV Core-core repulsion = 16594.277958 eV Total energy + Delta-G solvation = -2972.640333 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.29069 -38.30053 -37.18652 -34.19206 -32.45913 -31.22745 -31.10502 -28.50002 -27.06248 -26.01811 -25.05811 -23.00392 -21.67266 -21.13140 -19.80602 -17.83178 -16.44658 -16.23948 -15.80652 -15.77732 -15.18535 -14.89222 -14.39114 -14.25265 -14.06770 -13.48150 -12.98030 -12.71358 -12.59794 -12.25207 -12.14826 -12.06451 -11.63880 -11.34862 -11.11391 -11.03115 -10.75687 -10.58746 -10.44481 -9.86701 -9.64467 -9.46917 -8.70709 -8.29149 -8.19151 -8.10455 -7.45828 -7.16695 -4.76584 1.71188 1.92126 2.55118 2.56911 2.99929 3.09929 3.19820 3.81543 3.91323 4.44019 4.56315 5.07343 5.12081 5.29650 5.31715 5.37049 5.40330 5.52226 5.60389 5.61662 5.62918 5.83179 6.02780 6.11813 6.14893 6.38894 6.48492 6.61491 6.63657 6.87295 6.92541 7.06432 7.07774 7.14926 7.21378 7.36111 7.53843 7.68904 7.87298 8.14578 8.38690 8.55488 9.32448 9.82876 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020190 B = 0.005827 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.486372 B = 4803.920709 C = 5491.109726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.108 3.892 4 C -0.102 4.102 5 C -0.119 4.119 6 C -0.127 4.127 7 C -0.086 4.086 8 C 0.014 3.986 9 C -0.219 4.219 10 C 0.136 3.864 11 N -0.580 5.580 12 C 0.114 3.886 13 C -0.283 4.283 14 C 0.122 3.878 15 C -0.423 4.423 16 H 0.101 0.899 17 C 0.086 3.914 18 N -0.785 5.785 19 Si 0.912 3.088 20 H -0.266 1.266 21 H -0.287 1.287 22 H -0.244 1.244 23 C -0.103 4.103 24 H 0.039 0.961 25 H 0.038 0.962 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.108 0.892 35 H 0.290 0.710 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.845 5.393 -3.570 10.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.032 3.968 4 C -0.102 4.102 5 C -0.138 4.138 6 C -0.145 4.145 7 C -0.104 4.104 8 C 0.013 3.987 9 C -0.224 4.224 10 C -0.019 4.019 11 N -0.294 5.294 12 C -0.036 4.036 13 C -0.305 4.305 14 C 0.114 3.886 15 C -0.452 4.452 16 H 0.119 0.881 17 C -0.137 4.137 18 N -0.408 5.408 19 Si 0.737 3.263 20 H -0.192 1.192 21 H -0.214 1.214 22 H -0.167 1.167 23 C -0.122 4.122 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.102 0.898 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.126 0.874 35 H 0.101 0.899 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.766 5.612 -3.025 10.048 hybrid contribution 0.691 -0.461 -0.381 0.914 sum -7.076 5.151 -3.406 9.392 Atomic orbital electron populations 1.22727 0.81656 1.02598 0.99647 1.88041 1.19020 1.27856 1.95296 1.21321 0.90612 0.84690 1.00162 1.19296 0.93070 1.04153 0.93719 1.20840 0.94305 1.02000 0.96613 1.20982 0.93934 1.01660 0.97955 1.21433 1.00654 0.96985 0.91304 1.18607 0.91700 0.95685 0.92716 1.19500 1.07015 1.00728 0.95163 1.22209 0.95564 0.95700 0.88436 1.67402 1.12484 1.27031 1.22499 1.21669 0.93734 0.90598 0.97563 1.21631 1.08407 1.04143 0.96311 1.17819 0.89263 0.89833 0.91686 1.19547 0.97945 1.14407 1.13322 0.88142 1.26277 1.01216 0.93037 0.93135 1.69625 1.25965 1.13558 1.31648 0.86295 0.78538 0.82654 0.78776 1.19222 1.21435 1.16738 1.21114 0.93550 1.00675 0.96828 0.94219 0.94357 0.89778 0.92788 0.92955 0.87095 0.86623 0.85439 0.85565 0.85901 0.87412 0.89938 0.86655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.83 10.69 -35.23 -0.38 -6.21 16 3 C 0.11 1.50 6.06 36.01 0.22 1.72 16 4 C -0.10 -1.72 5.50 -104.68 -0.58 -2.30 16 5 C -0.12 -1.94 9.70 -39.46 -0.38 -2.33 16 6 C -0.13 -2.20 10.03 -39.64 -0.40 -2.60 16 7 C -0.09 -1.71 8.15 -39.17 -0.32 -2.03 16 8 C 0.01 0.29 5.01 -104.90 -0.53 -0.24 16 9 C -0.22 -5.01 5.54 -104.04 -0.58 -5.59 16 10 C 0.14 2.98 10.72 -17.22 -0.18 2.79 16 11 N -0.58 -13.18 10.32 -13.36 -0.14 -13.31 16 12 C 0.11 2.54 11.09 -18.02 -0.20 2.34 16 13 C -0.28 -6.66 7.22 -39.12 -0.28 -6.94 16 14 C 0.12 3.00 5.13 -106.26 -0.54 2.46 16 15 C -0.42 -10.82 7.68 -37.83 -0.29 -11.12 16 16 H 0.10 2.76 7.07 -52.48 -0.37 2.39 16 17 C 0.09 2.12 5.43 -17.31 -0.09 2.03 16 18 N -0.79 -19.72 13.92 55.56 0.77 -18.95 16 19 Si 0.91 19.70 24.54 -169.99 -4.17 15.53 16 20 H -0.27 -5.58 6.71 56.52 0.38 -5.20 16 21 H -0.29 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.24 -5.49 6.84 56.52 0.39 -5.10 16 23 C -0.10 -1.94 9.20 -39.16 -0.36 -2.30 16 24 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 28 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 29 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 31 H 0.13 2.66 7.34 -52.48 -0.39 2.28 16 32 H 0.13 2.40 8.06 -52.48 -0.42 1.98 16 33 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 34 H 0.11 2.47 4.78 -52.49 -0.25 2.22 16 35 H 0.29 6.55 8.29 -40.82 -0.34 6.21 16 36 H 0.12 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 305.94 15.07 4.61 4.61 Total: -1.00 -28.09 305.94 -7.11 -35.20 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -4.40 Total: 5.80 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -3.40 Total: -22.67 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.64 Total: -32.26 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.38 Total: -6.21 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.17 Total: 15.53 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.09 -7.11 -35.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239936949.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.869 kcal (2) G-P(sol) polarization free energy of solvation -28.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds