Wall clock time and date at job start Mon Mar 30 2020 00:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99777 * 2 1 4 4 C 1.50700 * 109.46705 * 180.02562 * 3 2 1 5 5 C 1.38422 * 119.92285 * 90.00900 * 4 3 2 6 6 C 1.38377 * 120.30404 * 180.02562 * 5 4 3 7 7 C 1.37939 * 120.15283 * 359.97438 * 6 5 4 8 8 C 1.39643 * 119.84775 * 359.97438 * 7 6 5 9 9 C 1.47852 * 120.15397 * 179.97438 * 8 7 6 10 10 C 1.39303 * 120.77974 * 129.99868 * 9 8 7 11 11 N 1.31678 * 120.66035 * 179.72464 * 10 9 8 12 12 C 1.32206 * 122.50424 * 0.28037 * 11 10 9 13 13 C 1.36497 * 121.50420 * 0.02562 * 12 11 10 14 14 C 1.41117 * 119.10411 * 359.97438 * 13 12 11 15 15 C 1.40933 * 121.10119 * 180.02562 * 14 13 12 16 16 H 1.08009 * 119.99781 * 150.51297 * 15 14 13 17 17 C 1.40184 * 120.00405 * 330.50624 * 15 14 13 18 18 N 1.30679 * 119.99832 * 162.01791 * 17 15 14 19 19 Si 1.86798 * 119.99779 * 342.02059 * 17 15 14 20 20 H 1.48496 * 109.47220 * 95.33150 * 19 17 15 21 21 H 1.48499 * 109.46914 * 215.33162 * 19 17 15 22 22 H 1.48500 * 109.47079 * 335.32911 * 19 17 15 23 23 C 1.37897 * 119.92790 * 270.23715 * 4 3 2 24 24 H 1.09003 * 109.47136 * 299.99429 * 1 2 3 25 25 H 1.09001 * 109.47508 * 59.99111 * 1 2 3 26 26 H 1.09002 * 109.47337 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46619 * 60.01038 * 3 2 1 28 28 H 1.08993 * 109.47326 * 300.00300 * 3 2 1 29 29 H 1.08000 * 119.84781 * 359.97438 * 5 4 3 30 30 H 1.08003 * 119.92624 * 179.97438 * 6 5 4 31 31 H 1.08005 * 120.07455 * 179.97438 * 7 6 5 32 32 H 1.08004 * 119.66947 * 0.02562 * 10 9 8 33 33 H 1.07995 * 119.24577 * 179.97438 * 12 11 10 34 34 H 1.07997 * 120.44434 * 180.02562 * 13 12 11 35 35 H 0.96998 * 120.00013 * 179.97438 * 18 17 15 36 36 H 1.08004 * 120.07478 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 -0.0006 5 6 4.2003 1.1323 -1.2006 6 6 5.5797 1.0225 -1.2104 7 6 6.2788 0.9667 -0.0226 8 6 5.5913 1.0219 1.1916 9 6 6.3338 0.9621 2.4688 10 6 6.1029 1.9004 3.4722 11 7 6.7616 1.8417 4.6109 12 6 7.6664 0.9108 4.8611 13 6 7.9721 -0.0518 3.9429 14 6 7.3050 -0.0508 2.6994 15 6 7.5873 -1.0251 1.7210 16 1 6.8197 -1.3296 1.0248 17 6 8.8644 -1.5989 1.6512 18 7 9.0416 -2.7224 1.0077 19 14 10.3128 -0.7576 2.4781 20 1 10.5196 -1.3413 3.8278 21 1 11.5353 -0.9584 1.6593 22 1 10.0348 0.6957 2.6045 23 6 4.1984 1.1270 1.1942 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6886 1.8463 0.8901 28 1 1.6885 1.8464 -0.8899 29 1 3.6579 1.1752 -2.1335 30 1 6.1102 0.9803 -2.1502 31 1 7.3553 0.8806 -0.0317 32 1 5.3728 2.6809 3.3166 33 1 8.1759 0.9125 5.8133 34 1 8.7139 -0.8045 4.1654 35 1 9.9254 -3.1193 0.9590 36 1 3.6601 1.1652 2.1297 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239936949.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:32 Heat of formation + Delta-G solvation = -18.542037 kcal Electronic energy + Delta-G solvation = -19567.621334 eV Core-core repulsion = 16594.277958 eV Total energy + Delta-G solvation = -2973.343376 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.87275 -39.76559 -38.36402 -36.02981 -34.05250 -32.88102 -32.59005 -30.10658 -28.07839 -27.83246 -26.13803 -24.62866 -23.42167 -22.59491 -21.33443 -19.69147 -17.92148 -17.45188 -17.27179 -16.96398 -16.56944 -16.44403 -16.09980 -15.76188 -15.44676 -15.00055 -14.65471 -14.37238 -14.20352 -13.53489 -13.45145 -13.43462 -13.09754 -12.83755 -12.75249 -12.52751 -12.32418 -12.09769 -11.81942 -11.64462 -11.23615 -10.60939 -10.38137 -9.99540 -9.89782 -9.68091 -9.07846 -9.01998 -6.67281 0.16259 0.50314 0.73355 0.91908 1.23558 1.38181 1.44440 2.05128 2.59679 2.72254 3.28557 3.51075 3.83279 3.97455 3.99580 4.12495 4.27949 4.36740 4.41015 4.45143 4.55514 4.59105 4.61112 4.65436 4.71403 4.82076 4.87749 5.06683 5.12481 5.18903 5.28927 5.35031 5.61587 5.65778 5.71695 5.91842 6.06318 6.16250 6.24911 6.28421 6.54306 6.64615 7.53221 8.03199 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020190 B = 0.005827 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.486372 B = 4803.920709 C = 5491.109726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.418 6.418 3 C 0.109 3.891 4 C -0.103 4.103 5 C -0.112 4.112 6 C -0.128 4.128 7 C -0.106 4.106 8 C -0.015 4.015 9 C -0.223 4.223 10 C 0.131 3.869 11 N -0.582 5.582 12 C 0.112 3.888 13 C -0.297 4.297 14 C 0.104 3.896 15 C -0.445 4.445 16 H 0.066 0.934 17 C 0.057 3.943 18 N -0.821 5.821 19 Si 0.962 3.038 20 H -0.252 1.252 21 H -0.272 1.272 22 H -0.260 1.260 23 C -0.111 4.111 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.146 0.854 30 H 0.139 0.861 31 H 0.105 0.895 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.112 0.888 35 H 0.300 0.700 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.056 6.676 -3.668 11.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C 0.033 3.967 4 C -0.103 4.103 5 C -0.130 4.130 6 C -0.146 4.146 7 C -0.125 4.125 8 C -0.016 4.016 9 C -0.227 4.227 10 C -0.024 4.024 11 N -0.296 5.296 12 C -0.039 4.039 13 C -0.319 4.319 14 C 0.096 3.904 15 C -0.475 4.475 16 H 0.084 0.916 17 C -0.162 4.162 18 N -0.446 5.446 19 Si 0.785 3.215 20 H -0.177 1.177 21 H -0.199 1.199 22 H -0.184 1.184 23 C -0.129 4.129 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.109 0.891 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.164 0.836 30 H 0.157 0.843 31 H 0.124 0.876 32 H 0.171 0.829 33 H 0.175 0.825 34 H 0.130 0.870 35 H 0.111 0.889 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.995 6.890 -3.130 11.755 hybrid contribution 0.877 -0.785 -0.391 1.240 sum -8.118 6.105 -3.520 10.750 Atomic orbital electron populations 1.22945 0.79322 1.03673 1.01199 1.87975 1.21634 1.28590 1.95636 1.21382 0.88297 0.84746 1.02246 1.19711 0.95193 1.02356 0.93048 1.21259 0.93853 0.99944 0.97969 1.21268 0.94816 1.00681 0.97833 1.21374 0.99882 0.98719 0.92489 1.18662 0.92787 0.98001 0.92141 1.19856 1.06335 1.00131 0.96404 1.22624 0.95853 0.95982 0.87971 1.67495 1.12417 1.27002 1.22730 1.22170 0.93388 0.89757 0.98550 1.21769 1.08873 1.05007 0.96252 1.18077 0.90222 0.90079 0.92001 1.19354 0.98056 1.16182 1.13888 0.91585 1.26845 1.02652 0.93250 0.93499 1.69635 1.27119 1.14599 1.33232 0.85535 0.76454 0.80617 0.78893 1.17685 1.19866 1.18435 1.21219 0.92668 1.00882 0.98132 0.93057 0.92344 0.89085 0.91469 0.90122 0.83645 0.84274 0.87649 0.82874 0.82474 0.87019 0.88934 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 11.01 113.37 1.25 1.69 16 2 O -0.42 -11.76 10.69 -148.98 -1.59 -13.35 16 3 C 0.11 2.69 6.06 71.24 0.43 3.12 16 4 C -0.10 -3.28 5.50 -19.90 -0.11 -3.39 16 5 C -0.11 -3.41 9.70 22.35 0.22 -3.19 16 6 C -0.13 -4.35 10.03 22.23 0.22 -4.13 16 7 C -0.11 -4.40 8.15 22.54 0.18 -4.22 16 8 C -0.02 -0.65 5.01 -20.04 -0.10 -0.75 16 9 C -0.22 -10.38 5.54 -19.49 -0.11 -10.49 16 10 C 0.13 5.62 10.72 84.97 0.91 6.53 16 11 N -0.58 -25.68 10.32 -196.19 -2.02 -27.70 16 12 C 0.11 4.82 11.09 84.23 0.93 5.76 16 13 C -0.30 -13.95 7.22 22.57 0.16 -13.79 16 14 C 0.10 5.27 5.13 -20.93 -0.11 5.16 16 15 C -0.45 -23.90 7.68 23.40 0.18 -23.72 16 16 H 0.07 3.90 7.07 -2.91 -0.02 3.88 16 17 C 0.06 2.88 5.43 85.34 0.46 3.34 16 18 N -0.82 -42.56 13.92 21.87 0.30 -42.26 16 19 Si 0.96 40.88 24.54 68.60 1.68 42.56 16 20 H -0.25 -10.03 6.71 99.48 0.67 -9.37 16 21 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 22 H -0.26 -11.64 6.84 99.48 0.68 -10.95 16 23 C -0.11 -4.11 9.20 22.54 0.21 -3.90 16 24 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 28 H 0.08 1.53 8.08 -2.39 -0.02 1.52 16 29 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 30 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 31 H 0.11 4.71 7.34 -2.91 -0.02 4.69 16 32 H 0.15 5.63 8.06 -2.91 -0.02 5.61 16 33 H 0.16 5.57 8.06 -2.91 -0.02 5.54 16 34 H 0.11 5.07 4.78 -2.91 -0.01 5.06 16 35 H 0.30 13.83 8.29 -92.71 -0.77 13.06 16 36 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -61.88 305.94 4.12 -57.76 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 1.02 Total: 24.95 kcal Atomic # 6 Polarization: -46.70 SS G_CDS: 4.74 Total: -41.96 kcal Atomic # 7 Polarization: -68.24 SS G_CDS: -1.72 Total: -69.96 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -1.59 Total: -13.35 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 1.68 Total: 42.56 kcal Total: -61.88 4.12 -57.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239936949.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.219 kcal (2) G-P(sol) polarization free energy of solvation -61.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds