Wall clock time and date at job start Mon Mar 30 2020 00:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 113.99623 * 2 1 4 4 C 1.50703 * 109.46901 * 180.02562 * 3 2 1 5 5 C 1.38421 * 119.92496 * 270.02409 * 4 3 2 6 6 C 1.38378 * 120.29519 * 179.97438 * 5 4 3 7 7 C 1.37950 * 120.14597 * 0.03593 * 6 5 4 8 8 C 1.39606 * 119.84936 * 359.93795 * 7 6 5 9 9 C 1.47973 * 120.14406 * 180.32146 * 8 7 6 10 10 C 1.40266 * 120.34181 * 359.72210 * 9 8 7 11 11 C 1.36684 * 118.60060 * 179.97438 * 10 9 8 12 12 C 1.40879 * 119.25793 * 0.02562 * 11 10 9 13 13 C 1.40992 * 119.68312 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99761 * 353.66693 * 13 12 11 15 15 C 1.40108 * 119.99702 * 173.66194 * 13 12 11 16 16 N 1.30708 * 119.99940 * 6.31037 * 15 13 12 17 17 Si 1.86797 * 119.99669 * 186.30686 * 15 13 12 18 18 H 1.48504 * 109.47092 * 94.98842 * 17 15 13 19 19 H 1.48501 * 109.47041 * 214.98641 * 17 15 13 20 20 H 1.48502 * 109.47443 * 334.98669 * 17 15 13 21 21 N 1.33779 * 120.63120 * 359.97438 * 12 11 10 22 22 C 1.31189 * 121.50842 * 359.72672 * 21 12 11 23 23 C 1.37913 * 119.92969 * 89.99412 * 4 3 2 24 24 H 1.08998 * 109.46983 * 300.00145 * 1 2 3 25 25 H 1.09000 * 109.47094 * 60.00574 * 1 2 3 26 26 H 1.08998 * 109.47210 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47311 * 60.00048 * 3 2 1 28 28 H 1.09002 * 109.47294 * 299.99226 * 3 2 1 29 29 H 1.07998 * 119.85183 * 359.97438 * 5 4 3 30 30 H 1.07997 * 119.92654 * 180.02562 * 6 5 4 31 31 H 1.07995 * 120.07482 * 180.02562 * 7 6 5 32 32 H 1.07994 * 120.70265 * 359.95717 * 10 9 8 33 33 H 1.08006 * 120.37577 * 179.97438 * 11 10 9 34 34 H 0.96998 * 119.99399 * 180.02562 * 16 15 13 35 35 H 1.08002 * 119.65578 * 180.26702 * 22 21 12 36 36 H 1.08001 * 120.07052 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2014 1.1313 1.1987 6 6 5.5808 1.0215 1.2071 7 6 6.2786 0.9672 0.0184 8 6 5.5900 1.0218 -1.1948 9 6 6.3314 0.9569 -2.4737 10 6 7.7297 0.8459 -2.4773 11 6 8.3784 0.7882 -3.6789 12 6 7.6278 0.8420 -4.8699 13 6 8.2878 0.7826 -6.1144 14 1 9.3669 0.7994 -6.1547 15 6 7.5436 0.7015 -7.2987 16 7 6.2412 0.8051 -7.2606 17 14 8.4128 0.4456 -8.9322 18 1 8.4307 -1.0023 -9.2619 19 1 7.6920 1.1870 -9.9980 20 1 9.8067 0.9484 -8.8354 21 7 6.2948 0.9479 -4.8313 22 6 5.6438 0.9997 -3.6935 23 6 4.1980 1.1323 -1.1961 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6887 1.8464 -0.8901 29 1 3.6598 1.1741 2.1321 30 1 6.1121 0.9785 2.1463 31 1 7.3551 0.8811 0.0262 32 1 8.2821 0.8073 -1.5501 33 1 9.4545 0.7031 -3.7151 34 1 5.7260 0.7486 -8.0805 35 1 4.5669 1.0809 -3.6972 36 1 3.6592 1.1746 -2.1312 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239937035.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:13 Heat of formation + Delta-G solvation = 4.991781 kcal Electronic energy + Delta-G solvation = -18940.429951 eV Core-core repulsion = 15968.107078 eV Total energy + Delta-G solvation = -2972.322873 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.23434 -38.10790 -37.21082 -33.96257 -32.19210 -31.30535 -30.61330 -28.84906 -27.14319 -25.60914 -25.18172 -22.70903 -22.12736 -20.66832 -19.86398 -17.66951 -16.58612 -16.30375 -15.87877 -15.62082 -15.29897 -14.60200 -14.43375 -14.19640 -13.63625 -13.12451 -12.75898 -12.68179 -12.59454 -12.19087 -12.02013 -11.94380 -11.51362 -11.31948 -11.24447 -11.05787 -10.77970 -10.55434 -10.28715 -10.02320 -9.68129 -9.64392 -8.83697 -8.43041 -8.26962 -7.68501 -7.20182 -6.59775 -4.63679 1.56948 1.80661 2.74012 2.99228 3.01374 3.02850 3.13577 3.80364 3.89540 4.42118 4.73568 5.02686 5.08122 5.27340 5.31484 5.35863 5.48385 5.52213 5.58528 5.67958 5.80803 5.87763 5.99203 6.07085 6.13561 6.41697 6.55610 6.65984 6.70947 6.90171 6.94721 6.99845 7.05870 7.15674 7.27229 7.42411 7.59928 7.73725 7.89364 8.05751 8.45631 8.74925 9.95018 10.11147 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.025220 B = 0.004074 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.984630 B = 6870.469615 C = 7879.012964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.106 3.894 4 C -0.084 4.084 5 C -0.143 4.143 6 C -0.112 4.112 7 C -0.142 4.142 8 C 0.031 3.969 9 C -0.278 4.278 10 C -0.035 4.035 11 C -0.272 4.272 12 C 0.251 3.749 13 C -0.409 4.409 14 H 0.088 0.912 15 C 0.063 3.937 16 N -0.700 5.700 17 Si 0.912 3.088 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.259 1.259 21 N -0.489 5.489 22 C 0.157 3.843 23 C -0.124 4.124 24 H 0.038 0.962 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.277 0.723 35 H 0.122 0.878 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.130 0.836 9.365 11.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.030 3.970 4 C -0.084 4.084 5 C -0.161 4.161 6 C -0.130 4.130 7 C -0.161 4.161 8 C 0.030 3.970 9 C -0.283 4.283 10 C -0.058 4.058 11 C -0.294 4.294 12 C 0.129 3.871 13 C -0.438 4.438 14 H 0.106 0.894 15 C -0.164 4.164 16 N -0.319 5.319 17 Si 0.736 3.264 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.183 1.183 21 N -0.200 5.200 22 C -0.012 4.012 23 C -0.142 4.142 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.102 0.898 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.135 0.865 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.140 0.860 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.599 0.711 8.355 10.671 hybrid contribution 0.585 0.046 0.194 0.618 sum -6.014 0.758 8.550 10.480 Atomic orbital electron populations 1.22734 0.81528 1.02612 0.99765 1.88012 1.19134 1.27793 1.95334 1.21350 0.90582 0.84747 1.00360 1.19339 0.93112 1.02287 0.93699 1.20746 0.94212 1.04537 0.96628 1.20892 0.94031 1.00597 0.97527 1.21193 0.99649 1.03361 0.91871 1.18851 0.92210 0.93175 0.92747 1.19040 0.93500 1.23533 0.92247 1.20656 0.93201 0.95354 0.96634 1.21440 0.99095 1.15383 0.93478 1.18680 0.88363 0.87904 0.92184 1.19804 0.94712 1.39579 0.89714 0.89360 1.26201 0.94912 0.93817 1.01479 1.70121 1.06352 1.26149 1.29296 0.86228 0.80514 0.79408 0.80289 1.19217 1.19855 1.18288 1.68799 1.08469 1.17692 1.25086 1.22770 0.98554 0.91876 0.87977 1.21044 0.93735 1.02392 0.97031 0.94345 0.94076 0.89762 0.92909 0.92572 0.87180 0.86869 0.86500 0.88284 0.88100 0.91147 0.86029 0.86203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.38 -5.57 10.69 -35.23 -0.38 -5.95 16 3 C 0.11 1.43 6.06 36.01 0.22 1.65 16 4 C -0.08 -1.37 5.50 -104.67 -0.58 -1.94 16 5 C -0.14 -2.17 9.70 -39.46 -0.38 -2.56 16 6 C -0.11 -1.73 10.03 -39.64 -0.40 -2.12 16 7 C -0.14 -2.50 9.44 -39.18 -0.37 -2.87 16 8 C 0.03 0.62 5.88 -104.88 -0.62 0.00 16 9 C -0.28 -6.28 5.92 -104.45 -0.62 -6.90 16 10 C -0.04 -0.79 9.46 -39.38 -0.37 -1.16 16 11 C -0.27 -6.53 9.76 -39.14 -0.38 -6.91 16 12 C 0.25 6.73 6.54 -84.98 -0.56 6.18 16 13 C -0.41 -10.54 9.11 -37.84 -0.34 -10.89 16 14 H 0.09 2.10 7.86 -52.49 -0.41 1.69 16 15 C 0.06 1.55 5.49 -17.33 -0.10 1.45 16 16 N -0.70 -18.00 11.47 55.55 0.64 -17.36 16 17 Si 0.91 17.75 29.56 -169.99 -5.03 12.73 16 18 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 19 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 20 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 21 N -0.49 -13.29 7.86 -10.85 -0.09 -13.38 16 22 C 0.16 3.82 10.60 -17.13 -0.18 3.64 16 23 C -0.12 -2.27 9.09 -39.18 -0.36 -2.63 16 24 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 28 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 29 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 30 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.12 1.91 6.25 -52.49 -0.33 1.59 16 32 H 0.10 1.90 6.30 -52.49 -0.33 1.57 16 33 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 34 H 0.28 6.40 8.29 -40.82 -0.34 6.06 16 35 H 0.12 2.68 6.21 -52.49 -0.33 2.35 16 36 H 0.12 2.14 6.22 -52.49 -0.33 1.82 16 LS Contribution 310.40 15.07 4.68 4.68 Total: -1.00 -29.23 310.40 -8.33 -37.55 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -4.23 Total: 5.38 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -3.92 Total: -23.64 kcal Atomic # 7 Polarization: -31.30 SS G_CDS: 0.55 Total: -30.74 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.38 Total: -5.95 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.73 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.23 -8.33 -37.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239937035.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.543 kcal (2) G-P(sol) polarization free energy of solvation -29.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds