Wall clock time and date at job start Mon Mar 30 2020 00:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 113.99623 * 2 1 4 4 C 1.50703 * 109.46901 * 180.02562 * 3 2 1 5 5 C 1.38421 * 119.92496 * 270.02409 * 4 3 2 6 6 C 1.38378 * 120.29519 * 179.97438 * 5 4 3 7 7 C 1.37950 * 120.14597 * 0.03593 * 6 5 4 8 8 C 1.39606 * 119.84936 * 359.93795 * 7 6 5 9 9 C 1.47973 * 120.14406 * 180.32146 * 8 7 6 10 10 C 1.40266 * 120.34181 * 359.72210 * 9 8 7 11 11 C 1.36684 * 118.60060 * 179.97438 * 10 9 8 12 12 C 1.40879 * 119.25793 * 0.02562 * 11 10 9 13 13 C 1.40992 * 119.68312 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99761 * 353.66693 * 13 12 11 15 15 C 1.40108 * 119.99702 * 173.66194 * 13 12 11 16 16 N 1.30708 * 119.99940 * 6.31037 * 15 13 12 17 17 Si 1.86797 * 119.99669 * 186.30686 * 15 13 12 18 18 H 1.48504 * 109.47092 * 94.98842 * 17 15 13 19 19 H 1.48501 * 109.47041 * 214.98641 * 17 15 13 20 20 H 1.48502 * 109.47443 * 334.98669 * 17 15 13 21 21 N 1.33779 * 120.63120 * 359.97438 * 12 11 10 22 22 C 1.31189 * 121.50842 * 359.72672 * 21 12 11 23 23 C 1.37913 * 119.92969 * 89.99412 * 4 3 2 24 24 H 1.08998 * 109.46983 * 300.00145 * 1 2 3 25 25 H 1.09000 * 109.47094 * 60.00574 * 1 2 3 26 26 H 1.08998 * 109.47210 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47311 * 60.00048 * 3 2 1 28 28 H 1.09002 * 109.47294 * 299.99226 * 3 2 1 29 29 H 1.07998 * 119.85183 * 359.97438 * 5 4 3 30 30 H 1.07997 * 119.92654 * 180.02562 * 6 5 4 31 31 H 1.07995 * 120.07482 * 180.02562 * 7 6 5 32 32 H 1.07994 * 120.70265 * 359.95717 * 10 9 8 33 33 H 1.08006 * 120.37577 * 179.97438 * 11 10 9 34 34 H 0.96998 * 119.99399 * 180.02562 * 16 15 13 35 35 H 1.08002 * 119.65578 * 180.26702 * 22 21 12 36 36 H 1.08001 * 120.07052 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2014 1.1313 1.1987 6 6 5.5808 1.0215 1.2071 7 6 6.2786 0.9672 0.0184 8 6 5.5900 1.0218 -1.1948 9 6 6.3314 0.9569 -2.4737 10 6 7.7297 0.8459 -2.4773 11 6 8.3784 0.7882 -3.6789 12 6 7.6278 0.8420 -4.8699 13 6 8.2878 0.7826 -6.1144 14 1 9.3669 0.7994 -6.1547 15 6 7.5436 0.7015 -7.2987 16 7 6.2412 0.8051 -7.2606 17 14 8.4128 0.4456 -8.9322 18 1 8.4307 -1.0023 -9.2619 19 1 7.6920 1.1870 -9.9980 20 1 9.8067 0.9484 -8.8354 21 7 6.2948 0.9479 -4.8313 22 6 5.6438 0.9997 -3.6935 23 6 4.1980 1.1323 -1.1961 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6887 1.8464 -0.8901 29 1 3.6598 1.1741 2.1321 30 1 6.1121 0.9785 2.1463 31 1 7.3551 0.8811 0.0262 32 1 8.2821 0.8073 -1.5501 33 1 9.4545 0.7031 -3.7151 34 1 5.7260 0.7486 -8.0805 35 1 4.5669 1.0809 -3.6972 36 1 3.6592 1.1746 -2.1312 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239937035.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:12 Heat of formation + Delta-G solvation = -10.926538 kcal Electronic energy + Delta-G solvation = -18941.120221 eV Core-core repulsion = 15968.107078 eV Total energy + Delta-G solvation = -2973.013143 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.71079 -39.64929 -38.37990 -35.72329 -33.72233 -32.76404 -32.31558 -30.50461 -28.12912 -27.35308 -26.23234 -24.29492 -23.82163 -22.20436 -21.35658 -19.48474 -18.00224 -17.40257 -17.26972 -16.86339 -16.63665 -16.15392 -15.90542 -15.60454 -15.09552 -14.48589 -14.42450 -14.39784 -14.06145 -13.52243 -13.33331 -13.12771 -12.99785 -12.87057 -12.70822 -12.46614 -12.29611 -11.90942 -11.82319 -11.60101 -11.34311 -10.63493 -10.50794 -10.08291 -9.72181 -9.55602 -8.88583 -8.39719 -6.52720 0.08963 0.48459 1.03943 1.25638 1.39385 1.54797 1.57401 2.18759 2.64522 2.91135 3.31862 3.87000 3.91441 3.97869 4.05173 4.14711 4.23300 4.37344 4.43745 4.46138 4.55102 4.57568 4.64942 4.70360 4.84619 4.86393 4.92147 5.11591 5.17045 5.18689 5.43593 5.48116 5.58979 5.68536 5.79097 6.01717 6.06004 6.17422 6.23665 6.25696 6.62745 6.86657 8.09070 8.34371 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.025220 B = 0.004074 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.984630 B = 6870.469615 C = 7879.012964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.106 3.894 4 C -0.093 4.093 5 C -0.129 4.129 6 C -0.109 4.109 7 C -0.144 4.144 8 C -0.006 4.006 9 C -0.266 4.266 10 C -0.040 4.040 11 C -0.285 4.285 12 C 0.217 3.783 13 C -0.450 4.450 14 H 0.096 0.904 15 C 0.020 3.980 16 N -0.747 5.747 17 Si 0.993 3.007 18 H -0.263 1.263 19 H -0.266 1.266 20 H -0.251 1.251 21 N -0.523 5.523 22 C 0.129 3.871 23 C -0.135 4.135 24 H 0.059 0.941 25 H 0.046 0.954 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.144 0.856 30 H 0.151 0.849 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.116 0.884 34 H 0.283 0.717 35 H 0.130 0.870 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.451 0.864 11.866 13.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.334 6.334 3 C 0.030 3.970 4 C -0.093 4.093 5 C -0.147 4.147 6 C -0.127 4.127 7 C -0.162 4.162 8 C -0.006 4.006 9 C -0.272 4.272 10 C -0.063 4.063 11 C -0.308 4.308 12 C 0.094 3.906 13 C -0.480 4.480 14 H 0.114 0.886 15 C -0.203 4.203 16 N -0.368 5.368 17 Si 0.812 3.188 18 H -0.188 1.188 19 H -0.191 1.191 20 H -0.174 1.174 21 N -0.235 5.235 22 C -0.037 4.037 23 C -0.153 4.153 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.162 0.838 30 H 0.169 0.831 31 H 0.145 0.855 32 H 0.151 0.849 33 H 0.134 0.866 34 H 0.094 0.906 35 H 0.148 0.852 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.948 0.746 10.898 12.946 hybrid contribution 0.496 0.050 -0.200 0.537 sum -6.451 0.797 10.699 12.519 Atomic orbital electron populations 1.22950 0.79376 1.03781 1.01075 1.87950 1.21547 1.28295 1.95613 1.21394 0.88837 0.84870 1.01922 1.19702 0.94912 1.01441 0.93255 1.21246 0.94480 1.01526 0.97487 1.21314 0.94336 0.98955 0.98112 1.21411 1.00391 1.02610 0.91800 1.18858 0.92903 0.96525 0.92359 1.19374 0.94026 1.20669 0.93084 1.21016 0.93326 0.94517 0.97416 1.21653 0.99913 1.15720 0.93477 1.19151 0.88718 0.88989 0.93748 1.20145 0.95339 1.41947 0.90525 0.88554 1.27155 0.95450 0.92678 1.05036 1.70219 1.08077 1.27846 1.30617 0.85034 0.79375 0.79318 0.75035 1.18777 1.19073 1.17412 1.68726 1.09230 1.18952 1.26610 1.23043 0.99201 0.93024 0.88462 1.21129 0.93476 1.02781 0.97931 0.92267 0.93488 0.88785 0.90074 0.92321 0.83778 0.83120 0.85457 0.84922 0.86564 0.90636 0.85223 0.87160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 11.01 113.37 1.25 1.68 16 2 O -0.41 -11.14 10.69 -148.98 -1.59 -12.74 16 3 C 0.11 2.59 6.06 71.24 0.43 3.02 16 4 C -0.09 -2.80 5.50 -19.90 -0.11 -2.91 16 5 C -0.13 -3.39 9.70 22.35 0.22 -3.18 16 6 C -0.11 -2.90 10.03 22.23 0.22 -2.68 16 7 C -0.14 -4.71 9.44 22.53 0.21 -4.49 16 8 C -0.01 -0.22 5.88 -20.03 -0.12 -0.34 16 9 C -0.27 -12.28 5.92 -19.75 -0.12 -12.39 16 10 C -0.04 -1.77 9.46 22.40 0.21 -1.56 16 11 C -0.29 -14.09 9.76 22.55 0.22 -13.87 16 12 C 0.22 12.21 6.54 40.17 0.26 12.47 16 13 C -0.45 -24.25 9.11 23.40 0.21 -24.03 16 14 H 0.10 4.77 7.86 -2.91 -0.02 4.75 16 15 C 0.02 1.00 5.49 85.31 0.47 1.47 16 16 N -0.75 -40.36 11.47 21.85 0.25 -40.11 16 17 Si 0.99 37.33 29.56 68.60 2.03 39.35 16 18 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 19 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 20 H -0.25 -8.95 7.11 99.48 0.71 -8.25 16 21 N -0.52 -30.05 7.86 -188.23 -1.48 -31.53 16 22 C 0.13 6.61 10.60 85.24 0.90 7.52 16 23 C -0.13 -4.90 9.09 22.53 0.20 -4.70 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.08 1.52 8.08 -2.39 -0.02 1.50 16 28 H 0.06 1.38 8.08 -2.39 -0.02 1.36 16 29 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 30 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 31 H 0.13 3.81 6.25 -2.91 -0.02 3.79 16 32 H 0.13 4.90 6.30 -2.91 -0.02 4.88 16 33 H 0.12 5.18 8.06 -2.91 -0.02 5.16 16 34 H 0.28 13.70 8.29 -92.71 -0.77 12.93 16 35 H 0.13 6.12 6.21 -2.91 -0.02 6.10 16 36 H 0.11 4.09 6.22 -2.91 -0.02 4.07 16 Total: -1.00 -66.58 310.40 4.77 -61.81 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 1.09 Total: 27.22 kcal Atomic # 6 Polarization: -48.48 SS G_CDS: 4.47 Total: -44.01 kcal Atomic # 7 Polarization: -70.41 SS G_CDS: -1.23 Total: -71.64 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -1.59 Total: -12.74 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.35 kcal Total: -66.58 4.77 -61.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239937035.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.888 kcal (2) G-P(sol) polarization free energy of solvation -66.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds