Wall clock time and date at job start Mon Mar 30 2020 00:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42906 * 113.99733 * 2 1 4 4 C 1.50701 * 109.46862 * 184.96952 * 3 2 1 5 5 C 1.38022 * 120.06358 * 5.54177 * 4 3 2 6 6 C 1.38318 * 120.12493 * 180.02562 * 5 4 3 7 7 C 1.38356 * 120.25249 * 359.97438 * 6 5 4 8 8 C 1.37981 * 120.12263 * 359.74240 * 7 6 5 9 9 C 1.39359 * 120.06447 * 185.56962 * 4 3 2 10 10 C 1.48313 * 120.12274 * 359.95040 * 9 4 3 11 11 C 1.39907 * 119.60333 * 129.28440 * 10 9 4 12 12 C 1.38697 * 119.45925 * 180.22976 * 11 10 9 13 13 C 1.38289 * 118.69015 * 359.50489 * 12 11 10 14 14 C 1.40685 * 119.18519 * 0.49422 * 13 12 11 15 15 C 1.41380 * 119.76316 * 179.72769 * 14 13 12 16 16 H 1.08004 * 120.00530 * 4.30295 * 15 14 13 17 17 C 1.40024 * 120.00027 * 184.30833 * 15 14 13 18 18 N 1.30749 * 119.99448 * 4.97854 * 17 15 14 19 19 Si 1.86798 * 120.00279 * 184.97976 * 17 15 14 20 20 H 1.48497 * 109.47052 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46970 * 119.99961 * 19 17 15 22 22 H 1.48500 * 109.47269 * 239.99696 * 19 17 15 23 23 N 1.32219 * 119.60998 * 309.26310 * 10 9 4 24 24 H 1.08998 * 109.47303 * 304.98375 * 1 2 3 25 25 H 1.09009 * 109.46989 * 64.97831 * 1 2 3 26 26 H 1.08999 * 109.46908 * 184.97832 * 1 2 3 27 27 H 1.08998 * 109.47224 * 64.96775 * 3 2 1 28 28 H 1.08999 * 109.46755 * 304.96864 * 3 2 1 29 29 H 1.08002 * 119.93912 * 0.02601 * 5 4 3 30 30 H 1.08001 * 119.86900 * 179.97438 * 6 5 4 31 31 H 1.07998 * 119.93616 * 180.02562 * 7 6 5 32 32 H 1.08006 * 120.06124 * 180.27932 * 8 7 6 33 33 H 1.07992 * 120.26888 * 359.95742 * 11 10 9 34 34 H 1.07996 * 120.65587 * 179.74500 * 12 11 10 35 35 H 1.07999 * 120.40894 * 180.23657 * 13 12 11 36 36 H 0.97002 * 120.00026 * 175.00763 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5076 1.1887 -0.1231 5 6 4.0903 -0.0455 -0.3288 6 6 5.4646 -0.1542 -0.4414 7 6 6.2629 0.9721 -0.3492 8 6 5.6909 2.2118 -0.1495 9 6 4.3068 2.3265 -0.0288 10 6 3.6865 3.6555 0.1917 11 6 4.1612 4.4778 1.2193 12 6 3.5757 5.7181 1.4259 13 6 2.5405 6.1100 0.5970 14 6 2.1078 5.2385 -0.4191 15 6 1.0465 5.6243 -1.2698 16 1 0.6173 6.6117 -1.1842 17 6 0.5518 4.7263 -2.2234 18 7 1.0035 3.4999 -2.2627 19 14 -0.7536 5.2802 -3.4394 20 1 -1.0927 6.7038 -3.1871 21 1 -0.2353 5.1330 -4.8232 22 1 -1.9700 4.4444 -3.2748 23 7 2.6919 4.0493 -0.5854 24 1 -0.3634 0.5892 0.8420 25 1 -0.3633 0.4347 -0.9313 26 1 -0.3633 -1.0238 0.0892 27 1 1.7608 1.8143 0.9311 28 1 1.6199 1.8769 -0.8421 29 1 3.4720 -0.9280 -0.4020 30 1 5.9162 -1.1220 -0.6020 31 1 7.3353 0.8813 -0.4383 32 1 6.3146 3.0909 -0.0822 33 1 4.9738 4.1477 1.8492 34 1 3.9241 6.3667 2.2161 35 1 2.0672 7.0715 0.7307 36 1 0.6105 2.8576 -2.8742 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239950288.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:57 Heat of formation + Delta-G solvation = 9.029205 kcal Electronic energy + Delta-G solvation = -20161.929597 eV Core-core repulsion = 17189.781800 eV Total energy + Delta-G solvation = -2972.147797 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.21725 -37.75972 -36.86772 -33.76885 -32.02523 -31.07639 -30.44156 -28.81595 -26.76463 -25.73083 -24.62226 -22.85470 -21.59167 -20.65946 -19.97431 -17.55882 -16.41140 -15.80328 -15.38692 -15.13880 -14.74817 -14.58630 -14.31215 -14.02391 -13.73320 -13.42242 -12.70468 -12.65085 -12.22497 -12.15870 -11.88689 -11.43980 -11.27966 -11.14753 -11.03522 -10.83259 -10.66343 -10.45737 -10.31094 -9.92847 -9.48957 -9.22460 -8.56841 -8.16774 -8.06430 -7.68274 -7.34112 -6.53094 -4.60902 1.74851 1.98631 2.68572 2.94085 3.04259 3.08006 3.13251 3.87120 4.30596 4.34562 4.65321 5.31561 5.42390 5.52557 5.59002 5.74504 5.77036 5.79839 6.01329 6.02528 6.10097 6.18155 6.27846 6.40378 6.46293 6.59241 6.65784 6.72519 6.88570 6.89853 7.01267 7.11281 7.24974 7.25947 7.47569 7.56549 7.66260 7.82516 7.93708 8.14127 8.58066 8.82184 9.94678 10.20325 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014895 B = 0.007978 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.341737 B = 3508.882330 C = 4579.394371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.402 6.402 3 C 0.086 3.914 4 C -0.047 4.047 5 C -0.111 4.111 6 C -0.131 4.131 7 C -0.133 4.133 8 C -0.107 4.107 9 C -0.009 4.009 10 C 0.174 3.826 11 C -0.295 4.295 12 C -0.059 4.059 13 C -0.271 4.271 14 C 0.256 3.744 15 C -0.431 4.431 16 H 0.085 0.915 17 C 0.074 3.926 18 N -0.723 5.723 19 Si 0.907 3.093 20 H -0.261 1.261 21 H -0.272 1.272 22 H -0.273 1.273 23 N -0.469 5.469 24 H 0.036 0.964 25 H 0.042 0.958 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.132 0.868 29 H 0.126 0.874 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.877 -5.147 1.890 5.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.321 6.321 3 C 0.011 3.989 4 C -0.048 4.048 5 C -0.129 4.129 6 C -0.150 4.150 7 C -0.151 4.151 8 C -0.126 4.126 9 C -0.010 4.010 10 C 0.029 3.971 11 C -0.319 4.319 12 C -0.084 4.084 13 C -0.294 4.294 14 C 0.131 3.869 15 C -0.462 4.462 16 H 0.103 0.897 17 C -0.150 4.150 18 N -0.345 5.345 19 Si 0.731 3.269 20 H -0.184 1.184 21 H -0.198 1.198 22 H -0.198 1.198 23 N -0.181 5.181 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.094 0.906 27 H 0.066 0.934 28 H 0.149 0.851 29 H 0.144 0.856 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.654 -5.991 1.051 6.303 hybrid contribution -0.392 1.095 0.261 1.192 sum 1.262 -4.896 1.312 5.223 Atomic orbital electron populations 1.22581 0.81600 1.01292 1.00274 1.87676 1.19194 1.29523 1.95744 1.21808 0.89786 0.83410 1.03903 1.19737 0.94535 0.92540 0.97951 1.20870 0.94347 0.97415 1.00224 1.21049 0.93842 0.98032 1.02028 1.20913 0.99138 0.92696 1.02373 1.21062 0.93674 0.97365 1.00467 1.18500 0.92318 0.91702 0.98510 1.19753 0.93240 0.91717 0.92380 1.21193 1.07318 0.97827 1.05537 1.20801 0.95316 0.95100 0.97136 1.21805 1.03475 1.01917 1.02184 1.18550 0.91341 0.87110 0.89928 1.19629 1.13363 1.00358 1.12862 0.89721 1.26024 0.96897 0.94769 0.97329 1.69888 1.32118 1.03080 1.29386 0.86279 0.80153 0.80154 0.80299 1.18433 1.19767 1.19831 1.68819 1.07814 1.16342 1.25168 0.94567 0.93981 0.90585 0.93439 0.85104 0.85602 0.86823 0.86698 0.86229 0.88560 0.88410 0.88227 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 11.01 101.05 1.11 1.74 16 2 O -0.40 -7.76 9.20 -35.23 -0.32 -8.09 16 3 C 0.09 1.86 4.96 36.01 0.18 2.04 16 4 C -0.05 -0.99 5.90 -104.28 -0.62 -1.61 16 5 C -0.11 -2.04 9.37 -39.63 -0.37 -2.41 16 6 C -0.13 -2.11 10.04 -39.51 -0.40 -2.51 16 7 C -0.13 -2.14 10.03 -39.63 -0.40 -2.54 16 8 C -0.11 -1.99 9.52 -39.24 -0.37 -2.37 16 9 C -0.01 -0.20 5.58 -104.90 -0.59 -0.79 16 10 C 0.17 4.18 5.70 -82.93 -0.47 3.71 16 11 C -0.30 -6.65 9.57 -38.79 -0.37 -7.02 16 12 C -0.06 -1.31 10.15 -39.39 -0.40 -1.71 16 13 C -0.27 -6.48 9.83 -38.64 -0.38 -6.86 16 14 C 0.26 6.75 6.54 -85.01 -0.56 6.19 16 15 C -0.43 -11.02 9.14 -37.72 -0.34 -11.37 16 16 H 0.08 2.04 7.85 -52.48 -0.41 1.63 16 17 C 0.07 1.79 5.48 -17.34 -0.10 1.70 16 18 N -0.72 -17.99 9.50 55.55 0.53 -17.46 16 19 Si 0.91 17.96 29.57 -169.99 -5.03 12.93 16 20 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 23 N -0.47 -12.31 6.27 -7.68 -0.05 -12.35 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.04 0.68 8.14 -51.92 -0.42 0.25 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.05 1.09 8.02 -51.93 -0.42 0.67 16 28 H 0.13 3.12 5.17 -51.93 -0.27 2.85 16 29 H 0.13 2.19 7.02 -52.49 -0.37 1.82 16 30 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 31 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.12 2.08 8.05 -52.48 -0.42 1.65 16 33 H 0.10 1.95 8.05 -52.49 -0.42 1.53 16 34 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.27 6.23 8.30 -40.82 -0.34 5.89 16 LS Contribution 307.80 15.07 4.64 4.64 Total: -1.00 -27.74 307.80 -8.70 -36.44 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -4.40 Total: 7.68 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -4.07 Total: -23.79 kcal Atomic # 7 Polarization: -30.30 SS G_CDS: 0.48 Total: -29.82 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.32 Total: -8.09 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.74 -8.70 -36.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239950288.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.469 kcal (2) G-P(sol) polarization free energy of solvation -27.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds