Wall clock time and date at job start Mon Mar 30 2020 00:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42906 * 113.99733 * 2 1 4 4 C 1.50701 * 109.46862 * 184.96952 * 3 2 1 5 5 C 1.38022 * 120.06358 * 5.54177 * 4 3 2 6 6 C 1.38318 * 120.12493 * 180.02562 * 5 4 3 7 7 C 1.38356 * 120.25249 * 359.97438 * 6 5 4 8 8 C 1.37981 * 120.12263 * 359.74240 * 7 6 5 9 9 C 1.39359 * 120.06447 * 185.56962 * 4 3 2 10 10 C 1.48313 * 120.12274 * 359.95040 * 9 4 3 11 11 C 1.39907 * 119.60333 * 129.28440 * 10 9 4 12 12 C 1.38697 * 119.45925 * 180.22976 * 11 10 9 13 13 C 1.38289 * 118.69015 * 359.50489 * 12 11 10 14 14 C 1.40685 * 119.18519 * 0.49422 * 13 12 11 15 15 C 1.41380 * 119.76316 * 179.72769 * 14 13 12 16 16 H 1.08004 * 120.00530 * 4.30295 * 15 14 13 17 17 C 1.40024 * 120.00027 * 184.30833 * 15 14 13 18 18 N 1.30749 * 119.99448 * 4.97854 * 17 15 14 19 19 Si 1.86798 * 120.00279 * 184.97976 * 17 15 14 20 20 H 1.48497 * 109.47052 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46970 * 119.99961 * 19 17 15 22 22 H 1.48500 * 109.47269 * 239.99696 * 19 17 15 23 23 N 1.32219 * 119.60998 * 309.26310 * 10 9 4 24 24 H 1.08998 * 109.47303 * 304.98375 * 1 2 3 25 25 H 1.09009 * 109.46989 * 64.97831 * 1 2 3 26 26 H 1.08999 * 109.46908 * 184.97832 * 1 2 3 27 27 H 1.08998 * 109.47224 * 64.96775 * 3 2 1 28 28 H 1.08999 * 109.46755 * 304.96864 * 3 2 1 29 29 H 1.08002 * 119.93912 * 0.02601 * 5 4 3 30 30 H 1.08001 * 119.86900 * 179.97438 * 6 5 4 31 31 H 1.07998 * 119.93616 * 180.02562 * 7 6 5 32 32 H 1.08006 * 120.06124 * 180.27932 * 8 7 6 33 33 H 1.07992 * 120.26888 * 359.95742 * 11 10 9 34 34 H 1.07996 * 120.65587 * 179.74500 * 12 11 10 35 35 H 1.07999 * 120.40894 * 180.23657 * 13 12 11 36 36 H 0.97002 * 120.00026 * 175.00763 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5076 1.1887 -0.1231 5 6 4.0903 -0.0455 -0.3288 6 6 5.4646 -0.1542 -0.4414 7 6 6.2629 0.9721 -0.3492 8 6 5.6909 2.2118 -0.1495 9 6 4.3068 2.3265 -0.0288 10 6 3.6865 3.6555 0.1917 11 6 4.1612 4.4778 1.2193 12 6 3.5757 5.7181 1.4259 13 6 2.5405 6.1100 0.5970 14 6 2.1078 5.2385 -0.4191 15 6 1.0465 5.6243 -1.2698 16 1 0.6173 6.6117 -1.1842 17 6 0.5518 4.7263 -2.2234 18 7 1.0035 3.4999 -2.2627 19 14 -0.7536 5.2802 -3.4394 20 1 -1.0927 6.7038 -3.1871 21 1 -0.2353 5.1330 -4.8232 22 1 -1.9700 4.4444 -3.2748 23 7 2.6919 4.0493 -0.5854 24 1 -0.3634 0.5892 0.8420 25 1 -0.3633 0.4347 -0.9313 26 1 -0.3633 -1.0238 0.0892 27 1 1.7608 1.8143 0.9311 28 1 1.6199 1.8769 -0.8421 29 1 3.4720 -0.9280 -0.4020 30 1 5.9162 -1.1220 -0.6020 31 1 7.3353 0.8813 -0.4383 32 1 6.3146 3.0909 -0.0822 33 1 4.9738 4.1477 1.8492 34 1 3.9241 6.3667 2.2161 35 1 2.0672 7.0715 0.7307 36 1 0.6105 2.8576 -2.8742 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239950288.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:56 Heat of formation + Delta-G solvation = -4.866968 kcal Electronic energy + Delta-G solvation = -20162.532181 eV Core-core repulsion = 17189.781800 eV Total energy + Delta-G solvation = -2972.750381 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.79546 -39.44330 -38.35588 -35.57575 -33.60790 -32.59423 -32.22524 -30.47064 -28.22041 -27.48437 -26.14949 -24.44628 -23.35848 -22.24379 -21.52732 -19.37036 -17.95878 -17.31959 -16.98649 -16.69254 -16.39577 -16.21843 -16.07331 -15.42275 -15.26661 -14.96595 -14.32359 -14.20773 -13.91753 -13.71287 -13.35523 -12.92488 -12.89148 -12.79048 -12.68064 -12.49081 -12.27940 -11.89503 -11.86103 -11.60432 -11.25002 -10.75758 -10.25454 -9.87095 -9.61217 -9.47843 -9.02845 -8.32489 -6.51720 0.22714 0.56624 0.96448 1.18650 1.39896 1.50870 1.53853 2.20635 2.77722 2.82833 2.96477 3.73927 3.85357 4.08555 4.20822 4.26773 4.35828 4.38537 4.52248 4.56716 4.68699 4.72754 4.73141 4.80017 4.85339 4.91412 4.99256 5.09006 5.24132 5.35243 5.37852 5.61522 5.64260 5.67336 5.78142 5.85140 6.12883 6.18439 6.26428 6.28835 6.73551 6.94074 8.11287 8.41547 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014895 B = 0.007978 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.341737 B = 3508.882330 C = 4579.394371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.405 6.405 3 C 0.099 3.901 4 C -0.075 4.075 5 C -0.116 4.116 6 C -0.118 4.118 7 C -0.120 4.120 8 C -0.114 4.114 9 C -0.043 4.043 10 C 0.158 3.842 11 C -0.300 4.300 12 C -0.057 4.057 13 C -0.293 4.293 14 C 0.222 3.778 15 C -0.464 4.464 16 H 0.087 0.913 17 C 0.032 3.968 18 N -0.749 5.749 19 Si 0.981 3.019 20 H -0.256 1.256 21 H -0.271 1.271 22 H -0.264 1.264 23 N -0.493 5.493 24 H 0.033 0.967 25 H 0.035 0.965 26 H 0.114 0.886 27 H 0.018 0.982 28 H 0.107 0.893 29 H 0.133 0.867 30 H 0.156 0.844 31 H 0.158 0.842 32 H 0.128 0.872 33 H 0.119 0.881 34 H 0.135 0.865 35 H 0.110 0.890 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.173 -6.473 1.712 7.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.324 6.324 3 C 0.023 3.977 4 C -0.076 4.076 5 C -0.134 4.134 6 C -0.136 4.136 7 C -0.138 4.138 8 C -0.132 4.132 9 C -0.044 4.044 10 C 0.014 3.986 11 C -0.323 4.323 12 C -0.081 4.081 13 C -0.316 4.316 14 C 0.097 3.903 15 C -0.495 4.495 16 H 0.106 0.894 17 C -0.189 4.189 18 N -0.371 5.371 19 Si 0.802 3.198 20 H -0.180 1.180 21 H -0.196 1.196 22 H -0.188 1.188 23 N -0.206 5.206 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.132 0.868 27 H 0.036 0.964 28 H 0.125 0.875 29 H 0.151 0.849 30 H 0.174 0.826 31 H 0.175 0.825 32 H 0.146 0.854 33 H 0.137 0.863 34 H 0.152 0.848 35 H 0.128 0.872 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.960 -7.319 0.894 7.945 hybrid contribution -0.693 1.411 0.388 1.620 sum 2.267 -5.907 1.281 6.456 Atomic orbital electron populations 1.22821 0.79976 1.03628 0.99874 1.87654 1.20981 1.28162 1.95642 1.21444 0.91039 0.83858 1.01312 1.19834 0.94000 0.93812 0.99981 1.21058 0.95877 0.96399 1.00057 1.21522 0.92651 0.99994 0.99413 1.21373 1.01272 0.91307 0.99844 1.21281 0.92399 0.99171 1.00390 1.18646 0.93846 0.90756 1.01173 1.20311 0.92817 0.93127 0.92386 1.21539 1.07682 0.97850 1.05217 1.21197 0.94232 0.95381 0.97255 1.21998 1.04672 1.02355 1.02564 1.19041 0.92212 0.87998 0.91092 1.19931 1.14259 1.01064 1.14263 0.89445 1.26858 0.98922 0.94563 0.98599 1.70013 1.33195 1.03969 1.29913 0.85165 0.77397 0.79830 0.77381 1.17961 1.19623 1.18827 1.68812 1.08871 1.16528 1.26424 0.94788 0.94610 0.86799 0.96385 0.87502 0.84892 0.82607 0.82463 0.85381 0.86269 0.84750 0.87153 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.06 11.01 113.37 1.25 2.31 16 2 O -0.40 -15.88 9.20 -148.98 -1.37 -17.26 16 3 C 0.10 4.51 4.96 71.24 0.35 4.86 16 4 C -0.08 -3.24 5.90 -19.65 -0.12 -3.36 16 5 C -0.12 -4.10 9.37 22.24 0.21 -3.89 16 6 C -0.12 -3.34 10.04 22.32 0.22 -3.12 16 7 C -0.12 -3.41 10.03 22.24 0.22 -3.19 16 8 C -0.11 -4.06 9.52 22.49 0.21 -3.85 16 9 C -0.04 -1.90 5.58 -20.04 -0.11 -2.01 16 10 C 0.16 7.82 5.70 42.17 0.24 8.06 16 11 C -0.30 -13.54 9.57 22.78 0.22 -13.33 16 12 C -0.06 -2.49 10.15 22.39 0.23 -2.27 16 13 C -0.29 -14.43 9.83 22.88 0.22 -14.20 16 14 C 0.22 12.25 6.54 40.26 0.26 12.51 16 15 C -0.46 -24.78 9.14 23.48 0.21 -24.56 16 16 H 0.09 4.40 7.85 -2.91 -0.02 4.38 16 17 C 0.03 1.61 5.48 85.29 0.47 2.07 16 18 N -0.75 -38.89 9.50 21.84 0.21 -38.68 16 19 Si 0.98 37.63 29.57 68.60 2.03 39.66 16 20 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 21 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 22 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 23 N -0.49 -27.11 6.27 -178.20 -1.12 -28.23 16 24 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.02 0.89 8.02 -2.39 -0.02 0.87 16 28 H 0.11 5.41 5.17 -2.39 -0.01 5.40 16 29 H 0.13 4.42 7.02 -2.91 -0.02 4.40 16 30 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 31 H 0.16 3.16 8.06 -2.91 -0.02 3.13 16 32 H 0.13 4.24 8.05 -2.91 -0.02 4.22 16 33 H 0.12 4.71 8.05 -2.91 -0.02 4.68 16 34 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 35 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 36 H 0.28 13.16 8.30 -92.71 -0.77 12.39 16 Total: -1.00 -63.37 307.80 4.92 -58.44 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 1.08 Total: 30.01 kcal Atomic # 6 Polarization: -48.06 SS G_CDS: 4.10 Total: -43.96 kcal Atomic # 7 Polarization: -66.00 SS G_CDS: -0.91 Total: -66.91 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -1.37 Total: -17.26 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 2.03 Total: 39.66 kcal Total: -63.37 4.92 -58.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239950288.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.577 kcal (2) G-P(sol) polarization free energy of solvation -63.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds