Wall clock time and date at job start Mon Mar 30 2020 00:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00332 * 2 1 4 4 C 1.50697 * 109.47382 * 179.97438 * 3 2 1 5 5 C 1.38051 * 120.05986 * 0.02562 * 4 3 2 6 6 C 1.38302 * 120.11803 * 179.69822 * 5 4 3 7 7 C 1.38342 * 120.24257 * 0.28064 * 6 5 4 8 8 C 1.38005 * 120.12148 * 359.97438 * 7 6 5 9 9 C 1.39305 * 120.06348 * 180.24773 * 4 3 2 10 10 C 1.48416 * 120.12004 * 0.02651 * 9 4 3 11 11 C 1.39703 * 120.41110 * 310.27396 * 10 9 4 12 12 N 1.31911 * 121.15253 * 180.02562 * 11 10 9 13 13 C 1.31518 * 122.12007 * 359.97438 * 12 11 10 14 14 C 1.40767 * 120.66712 * 359.97438 * 13 12 11 15 15 C 1.41439 * 120.60762 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99614 * 335.75655 * 15 14 13 17 17 C 1.39935 * 120.00209 * 155.75277 * 15 14 13 18 18 N 1.30831 * 119.99968 * 343.25308 * 17 15 14 19 19 Si 1.86803 * 120.00018 * 163.25327 * 17 15 14 20 20 H 1.48504 * 109.46930 * 60.00212 * 19 17 15 21 21 H 1.48501 * 109.47139 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47265 * 300.00307 * 19 17 15 23 23 C 1.39139 * 120.40932 * 129.99763 * 10 9 4 24 24 H 1.08998 * 109.47151 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46821 * 300.00000 * 1 2 3 26 26 H 1.08992 * 109.47020 * 60.00100 * 1 2 3 27 27 H 1.09000 * 109.47093 * 59.99990 * 3 2 1 28 28 H 1.09003 * 109.47393 * 300.00105 * 3 2 1 29 29 H 1.08000 * 119.93754 * 359.97438 * 5 4 3 30 30 H 1.07997 * 119.87240 * 180.25046 * 6 5 4 31 31 H 1.07995 * 119.93416 * 179.97438 * 7 6 5 32 32 H 1.07995 * 120.05961 * 180.02562 * 8 7 6 33 33 H 1.08004 * 119.42289 * 359.97438 * 11 10 9 34 34 H 1.08005 * 119.66628 * 180.02562 * 13 12 11 35 35 H 0.97003 * 119.99710 * 179.97438 * 18 17 15 36 36 H 1.07993 * 120.95553 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.1076 -0.0594 0.0006 6 6 5.4861 -0.1700 -0.0051 7 6 6.2763 0.9656 -0.0050 8 6 5.6920 2.2158 0.0004 9 6 4.3035 2.3331 0.0060 10 6 3.6695 3.6750 0.0116 11 6 2.6635 3.9858 -0.9066 12 7 2.0905 5.1739 -0.9150 13 6 2.4311 6.1205 -0.0678 14 6 3.4346 5.8965 0.8936 15 6 3.7995 6.9153 1.8044 16 1 3.6278 7.9514 1.5528 17 6 4.3828 6.5807 3.0316 18 7 4.2972 5.3562 3.4843 19 14 5.2837 7.8823 4.0234 20 1 4.3470 8.9844 4.3601 21 1 5.8070 7.2773 5.2745 22 1 6.4136 8.4200 3.2237 23 6 4.0657 4.6372 0.9353 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.4953 -0.9491 0.0005 30 1 5.9474 -1.1465 -0.0093 31 1 7.3523 0.8734 -0.0090 32 1 6.3098 3.1016 0.0001 33 1 2.3501 3.2405 -1.6227 34 1 1.9353 7.0791 -0.1097 35 1 4.7019 5.1242 4.3348 36 1 4.8376 4.4265 1.6605 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239952374.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:15 Heat of formation + Delta-G solvation = -2.720801 kcal Electronic energy + Delta-G solvation = -19711.247480 eV Core-core repulsion = 16738.590164 eV Total energy + Delta-G solvation = -2972.657316 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.46950 -37.95226 -37.21224 -34.17499 -32.52489 -31.41485 -30.35591 -28.47218 -26.97491 -25.84000 -25.01477 -22.88681 -21.65214 -20.95515 -20.10891 -17.48297 -16.42004 -16.16214 -15.82807 -15.48768 -15.20927 -14.90969 -14.47284 -14.15454 -13.92761 -13.41799 -12.88378 -12.66594 -12.39453 -12.29873 -11.81972 -11.77383 -11.55778 -11.37555 -11.29674 -11.12591 -10.74407 -10.63522 -10.59797 -9.88648 -9.60435 -9.45359 -8.78966 -8.31790 -8.23960 -7.89296 -7.42581 -6.92354 -4.57575 1.59800 1.81882 2.59413 2.86963 2.97955 2.99940 3.13179 3.79463 3.92625 4.19746 4.51139 5.18161 5.29937 5.38488 5.44191 5.45578 5.50474 5.57632 5.69568 5.72069 5.85990 5.89267 6.00980 6.07209 6.33377 6.44257 6.54019 6.67273 6.75123 6.80788 6.89047 6.98805 7.08705 7.16066 7.40507 7.40911 7.59999 7.76979 7.84483 8.32830 8.59015 8.61645 9.53288 9.98565 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.018073 B = 0.005878 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.933298 B = 4762.319887 C = 5441.056441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.394 6.394 3 C 0.102 3.898 4 C -0.083 4.083 5 C -0.100 4.100 6 C -0.137 4.137 7 C -0.122 4.122 8 C -0.110 4.110 9 C -0.005 4.005 10 C -0.095 4.095 11 C -0.030 4.030 12 N -0.468 5.468 13 C -0.020 4.020 14 C 0.063 3.937 15 C -0.449 4.449 16 H 0.084 0.916 17 C 0.074 3.926 18 N -0.788 5.788 19 Si 0.913 3.087 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.113 4.113 24 H 0.082 0.918 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.127 0.873 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.285 0.715 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.560 -7.902 -2.222 8.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.313 6.313 3 C 0.026 3.974 4 C -0.083 4.083 5 C -0.118 4.118 6 C -0.155 4.155 7 C -0.140 4.140 8 C -0.128 4.128 9 C -0.005 4.005 10 C -0.097 4.097 11 C -0.187 4.187 12 N -0.175 5.175 13 C -0.181 4.181 14 C 0.058 3.942 15 C -0.479 4.479 16 H 0.102 0.898 17 C -0.145 4.145 18 N -0.412 5.412 19 Si 0.737 3.263 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.138 4.138 24 H 0.101 0.899 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.145 0.855 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.144 0.856 35 H 0.096 0.904 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.071 -8.052 -2.615 8.466 hybrid contribution 0.906 0.590 1.296 1.688 sum 0.977 -7.461 -1.319 7.640 Atomic orbital electron populations 1.22691 0.81180 1.02210 1.00259 1.87764 1.19487 1.28458 1.95589 1.21472 0.90265 0.83799 1.01824 1.19641 0.93783 0.92994 1.01852 1.20834 0.94344 0.97134 0.99500 1.21046 0.93789 0.98070 1.02632 1.21017 0.99357 0.92577 1.01058 1.21180 0.93827 0.97443 1.00394 1.18691 0.92664 0.92089 0.97105 1.19457 0.99033 0.92491 0.98762 1.21760 1.00164 0.94774 1.02049 1.66936 1.26340 1.01078 1.23109 1.22524 0.99509 0.97846 0.98199 1.18474 0.90189 0.93102 0.92395 1.19539 1.34322 0.94621 0.99382 0.89804 1.25983 0.94186 0.96362 0.97965 1.69776 1.33060 1.19672 1.18681 0.86278 0.80398 0.81002 0.78642 1.18768 1.20185 1.18643 1.21790 1.00698 0.93118 0.98244 0.89936 0.94054 0.94025 0.91706 0.90941 0.85518 0.86665 0.86545 0.85979 0.86185 0.85588 0.90380 0.85150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.39 -6.26 9.18 -35.23 -0.32 -6.58 16 3 C 0.10 1.80 4.89 36.00 0.18 1.97 16 4 C -0.08 -1.53 5.87 -104.30 -0.61 -2.14 16 5 C -0.10 -1.65 9.37 -39.63 -0.37 -2.02 16 6 C -0.14 -2.05 10.04 -39.52 -0.40 -2.45 16 7 C -0.12 -1.89 10.03 -39.63 -0.40 -2.29 16 8 C -0.11 -2.01 9.54 -39.25 -0.37 -2.38 16 9 C 0.00 -0.09 5.49 -104.89 -0.58 -0.67 16 10 C -0.10 -2.17 5.10 -104.82 -0.53 -2.70 16 11 C -0.03 -0.68 9.39 -16.97 -0.16 -0.84 16 12 N -0.47 -11.31 10.32 -12.28 -0.13 -11.44 16 13 C -0.02 -0.48 10.96 -16.73 -0.18 -0.67 16 14 C 0.06 1.61 5.59 -106.71 -0.60 1.01 16 15 C -0.45 -11.25 9.08 -37.73 -0.34 -11.60 16 16 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 17 C 0.07 1.76 5.19 -17.34 -0.09 1.67 16 18 N -0.79 -19.44 10.90 55.55 0.61 -18.83 16 19 Si 0.91 17.73 29.59 -169.99 -5.03 12.70 16 20 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 21 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 22 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 23 C -0.11 -2.82 8.30 -38.23 -0.32 -3.13 16 24 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.07 1.27 5.52 -51.93 -0.29 0.98 16 29 H 0.13 1.93 7.00 -52.49 -0.37 1.56 16 30 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 31 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.12 2.18 8.05 -52.49 -0.42 1.76 16 33 H 0.12 2.48 6.18 -52.48 -0.32 2.15 16 34 H 0.13 2.87 8.06 -52.48 -0.42 2.45 16 35 H 0.29 6.45 8.30 -40.82 -0.34 6.11 16 36 H 0.13 3.35 6.20 -52.49 -0.33 3.02 16 LS Contribution 307.07 15.07 4.63 4.63 Total: -1.00 -27.31 307.07 -8.15 -35.45 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -4.23 Total: 8.77 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -3.66 Total: -24.70 kcal Atomic # 7 Polarization: -30.75 SS G_CDS: 0.48 Total: -30.28 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -0.32 Total: -6.58 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.70 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.31 -8.15 -35.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239952374.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.734 kcal (2) G-P(sol) polarization free energy of solvation -27.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds