Wall clock time and date at job start Mon Mar 30 2020 00:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00332 * 2 1 4 4 C 1.50697 * 109.47382 * 179.97438 * 3 2 1 5 5 C 1.38051 * 120.05986 * 0.02562 * 4 3 2 6 6 C 1.38302 * 120.11803 * 179.69822 * 5 4 3 7 7 C 1.38342 * 120.24257 * 0.28064 * 6 5 4 8 8 C 1.38005 * 120.12148 * 359.97438 * 7 6 5 9 9 C 1.39305 * 120.06348 * 180.24773 * 4 3 2 10 10 C 1.48416 * 120.12004 * 0.02651 * 9 4 3 11 11 C 1.39703 * 120.41110 * 310.27396 * 10 9 4 12 12 N 1.31911 * 121.15253 * 180.02562 * 11 10 9 13 13 C 1.31518 * 122.12007 * 359.97438 * 12 11 10 14 14 C 1.40767 * 120.66712 * 359.97438 * 13 12 11 15 15 C 1.41439 * 120.60762 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99614 * 335.75655 * 15 14 13 17 17 C 1.39935 * 120.00209 * 155.75277 * 15 14 13 18 18 N 1.30831 * 119.99968 * 343.25308 * 17 15 14 19 19 Si 1.86803 * 120.00018 * 163.25327 * 17 15 14 20 20 H 1.48504 * 109.46930 * 60.00212 * 19 17 15 21 21 H 1.48501 * 109.47139 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47265 * 300.00307 * 19 17 15 23 23 C 1.39139 * 120.40932 * 129.99763 * 10 9 4 24 24 H 1.08998 * 109.47151 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46821 * 300.00000 * 1 2 3 26 26 H 1.08992 * 109.47020 * 60.00100 * 1 2 3 27 27 H 1.09000 * 109.47093 * 59.99990 * 3 2 1 28 28 H 1.09003 * 109.47393 * 300.00105 * 3 2 1 29 29 H 1.08000 * 119.93754 * 359.97438 * 5 4 3 30 30 H 1.07997 * 119.87240 * 180.25046 * 6 5 4 31 31 H 1.07995 * 119.93416 * 179.97438 * 7 6 5 32 32 H 1.07995 * 120.05961 * 180.02562 * 8 7 6 33 33 H 1.08004 * 119.42289 * 359.97438 * 11 10 9 34 34 H 1.08005 * 119.66628 * 180.02562 * 13 12 11 35 35 H 0.97003 * 119.99710 * 179.97438 * 18 17 15 36 36 H 1.07993 * 120.95553 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.1076 -0.0594 0.0006 6 6 5.4861 -0.1700 -0.0051 7 6 6.2763 0.9656 -0.0050 8 6 5.6920 2.2158 0.0004 9 6 4.3035 2.3331 0.0060 10 6 3.6695 3.6750 0.0116 11 6 2.6635 3.9858 -0.9066 12 7 2.0905 5.1739 -0.9150 13 6 2.4311 6.1205 -0.0678 14 6 3.4346 5.8965 0.8936 15 6 3.7995 6.9153 1.8044 16 1 3.6278 7.9514 1.5528 17 6 4.3828 6.5807 3.0316 18 7 4.2972 5.3562 3.4843 19 14 5.2837 7.8823 4.0234 20 1 4.3470 8.9844 4.3601 21 1 5.8070 7.2773 5.2745 22 1 6.4136 8.4200 3.2237 23 6 4.0657 4.6372 0.9353 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.4953 -0.9491 0.0005 30 1 5.9474 -1.1465 -0.0093 31 1 7.3523 0.8734 -0.0090 32 1 6.3098 3.1016 0.0001 33 1 2.3501 3.2405 -1.6227 34 1 1.9353 7.0791 -0.1097 35 1 4.7019 5.1242 4.3348 36 1 4.8376 4.4265 1.6605 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239952374.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:14 Heat of formation + Delta-G solvation = -16.715398 kcal Electronic energy + Delta-G solvation = -19711.854331 eV Core-core repulsion = 16738.590164 eV Total energy + Delta-G solvation = -2973.264167 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.98328 -39.60920 -38.46320 -36.01286 -34.06563 -32.83728 -32.16642 -30.03523 -28.16986 -27.62042 -26.33933 -24.49117 -23.45345 -22.38188 -21.65262 -19.25628 -17.89960 -17.56989 -17.27714 -17.09104 -16.81014 -16.29300 -16.12498 -15.43739 -15.28326 -14.97203 -14.34657 -14.17184 -14.02840 -13.65320 -13.47517 -13.36636 -13.23163 -13.01242 -12.70558 -12.52412 -12.28756 -12.06048 -11.95642 -11.54380 -11.23317 -10.83454 -10.40748 -10.13267 -9.76133 -9.63375 -9.06687 -8.72893 -6.49462 0.12281 0.48306 0.86417 1.07266 1.38031 1.49380 1.53029 2.16303 2.64782 2.71972 2.88299 3.62974 3.80510 3.92790 4.05545 4.15133 4.22612 4.32738 4.38450 4.52518 4.55105 4.59854 4.65102 4.74228 4.77467 4.82292 5.00657 5.02295 5.15580 5.17349 5.25707 5.53085 5.61156 5.62595 5.79947 5.86557 5.97959 6.11839 6.15877 6.44481 6.71655 6.72768 7.63558 8.20470 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.018073 B = 0.005878 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.933298 B = 4762.319887 C = 5441.056441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.112 3.888 4 C -0.096 4.096 5 C -0.103 4.103 6 C -0.122 4.122 7 C -0.116 4.116 8 C -0.124 4.124 9 C -0.039 4.039 10 C -0.084 4.084 11 C -0.034 4.034 12 N -0.476 5.476 13 C -0.040 4.040 14 C 0.039 3.961 15 C -0.478 4.478 16 H 0.088 0.912 17 C 0.036 3.964 18 N -0.817 5.817 19 Si 0.987 3.013 20 H -0.256 1.256 21 H -0.268 1.268 22 H -0.258 1.258 23 C -0.135 4.135 24 H 0.112 0.888 25 H 0.039 0.961 26 H 0.048 0.952 27 H 0.039 0.961 28 H 0.069 0.931 29 H 0.142 0.858 30 H 0.157 0.843 31 H 0.151 0.849 32 H 0.115 0.885 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.292 0.708 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.675 -9.577 -2.021 9.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C 0.036 3.964 4 C -0.096 4.096 5 C -0.120 4.120 6 C -0.140 4.140 7 C -0.133 4.133 8 C -0.142 4.142 9 C -0.040 4.040 10 C -0.086 4.086 11 C -0.192 4.192 12 N -0.183 5.183 13 C -0.200 4.200 14 C 0.035 3.965 15 C -0.507 4.507 16 H 0.107 0.893 17 C -0.180 4.180 18 N -0.442 5.442 19 Si 0.807 3.193 20 H -0.180 1.180 21 H -0.192 1.192 22 H -0.183 1.183 23 C -0.161 4.161 24 H 0.130 0.870 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.160 0.840 30 H 0.174 0.826 31 H 0.169 0.831 32 H 0.133 0.867 33 H 0.158 0.842 34 H 0.154 0.846 35 H 0.103 0.897 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.166 -9.735 -2.430 10.101 hybrid contribution 0.534 0.934 1.188 1.603 sum 1.700 -8.801 -1.242 9.050 Atomic orbital electron populations 1.22961 0.79338 1.04279 1.00549 1.87738 1.21464 1.27107 1.95573 1.21214 0.90346 0.84510 1.00370 1.19773 0.94030 0.93440 1.02380 1.21092 0.95484 0.96562 0.98907 1.21522 0.93053 0.99693 0.99705 1.21385 1.01251 0.91377 0.99336 1.21288 0.93085 0.98810 1.01010 1.18686 0.93788 0.91146 1.00368 1.19684 0.98188 0.93515 0.97258 1.22126 1.00050 0.94699 1.02331 1.66944 1.26639 1.01562 1.23157 1.22703 1.00037 0.98594 0.98695 1.18805 0.90734 0.93868 0.93102 1.19838 1.35811 0.94775 1.00320 0.89349 1.26858 0.94156 0.98509 0.98513 1.69840 1.33466 1.21543 1.19338 0.85160 0.78966 0.78061 0.77074 1.18047 1.19237 1.18252 1.21746 1.01322 0.93910 0.99120 0.86978 0.94234 0.93313 0.94249 0.91325 0.84042 0.82570 0.83109 0.86699 0.84198 0.84580 0.89695 0.86486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 11.01 113.37 1.25 1.82 16 2 O -0.40 -12.23 9.18 -148.98 -1.37 -13.59 16 3 C 0.11 3.96 4.89 71.23 0.35 4.31 16 4 C -0.10 -3.52 5.87 -19.65 -0.12 -3.63 16 5 C -0.10 -3.13 9.37 22.24 0.21 -2.92 16 6 C -0.12 -3.17 10.04 22.31 0.22 -2.95 16 7 C -0.12 -3.25 10.03 22.24 0.22 -3.03 16 8 C -0.12 -4.46 9.54 22.48 0.21 -4.24 16 9 C -0.04 -1.59 5.49 -20.04 -0.11 -1.70 16 10 C -0.08 -3.97 5.10 -19.99 -0.10 -4.07 16 11 C -0.03 -1.60 9.39 85.04 0.80 -0.80 16 12 N -0.48 -23.68 10.32 -192.78 -1.99 -25.67 16 13 C -0.04 -2.04 10.96 85.36 0.94 -1.10 16 14 C 0.04 2.10 5.59 -21.22 -0.12 1.98 16 15 C -0.48 -24.75 9.08 23.47 0.21 -24.54 16 16 H 0.09 4.32 7.90 -2.91 -0.02 4.29 16 17 C 0.04 1.74 5.19 85.25 0.44 2.19 16 18 N -0.82 -41.32 10.90 21.82 0.24 -41.08 16 19 Si 0.99 36.29 29.59 68.60 2.03 38.32 16 20 H -0.26 -9.09 7.11 99.48 0.71 -8.39 16 21 H -0.27 -9.37 7.11 99.48 0.71 -8.67 16 22 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 23 C -0.14 -7.05 8.30 23.14 0.19 -6.86 16 24 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.07 2.43 5.52 -2.39 -0.01 2.42 16 29 H 0.14 3.87 7.00 -2.91 -0.02 3.85 16 30 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 31 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 32 H 0.11 4.18 8.05 -2.91 -0.02 4.16 16 33 H 0.14 5.84 6.18 -2.91 -0.02 5.82 16 34 H 0.14 6.45 8.06 -2.91 -0.02 6.43 16 35 H 0.29 13.39 8.30 -92.71 -0.77 12.62 16 36 H 0.12 6.33 6.20 -2.91 -0.02 6.31 16 Total: -1.00 -60.51 307.07 4.60 -55.91 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: 1.09 Total: 31.65 kcal Atomic # 6 Polarization: -50.15 SS G_CDS: 4.60 Total: -45.54 kcal Atomic # 7 Polarization: -64.99 SS G_CDS: -1.75 Total: -66.74 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -1.37 Total: -13.59 kcal Atomic # 14 Polarization: 36.29 SS G_CDS: 2.03 Total: 38.32 kcal Total: -60.51 4.60 -55.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239952374.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.194 kcal (2) G-P(sol) polarization free energy of solvation -60.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds