Wall clock time and date at job start Mon Mar 30 2020 00:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 114.00211 * 2 1 4 4 C 1.50700 * 109.46942 * 179.97438 * 3 2 1 5 5 C 1.37953 * 120.07446 * 0.02562 * 4 3 2 6 6 C 1.38371 * 120.14498 * 180.02562 * 5 4 3 7 7 C 1.38419 * 120.29580 * 359.95168 * 6 5 4 8 8 C 1.37910 * 120.14871 * 0.02562 * 7 6 5 9 9 C 1.39602 * 120.07140 * 180.02562 * 4 3 2 10 10 C 1.47961 * 120.14893 * 359.96157 * 9 4 3 11 11 C 1.40260 * 120.34772 * 129.71644 * 10 9 4 12 12 C 1.36696 * 118.60266 * 179.77388 * 11 10 9 13 13 C 1.40874 * 119.25367 * 0.48604 * 12 11 10 14 14 C 1.40991 * 119.67658 * 179.73876 * 13 12 11 15 15 H 1.07999 * 120.00241 * 353.67689 * 14 13 12 16 16 C 1.40104 * 119.99551 * 173.67735 * 14 13 12 17 17 N 1.30715 * 120.00178 * 6.29881 * 16 14 13 18 18 Si 1.86803 * 119.99915 * 186.29957 * 16 14 13 19 19 H 1.48501 * 109.46759 * 94.98600 * 18 16 14 20 20 H 1.48504 * 109.47112 * 214.98361 * 18 16 14 21 21 H 1.48499 * 109.47166 * 334.98541 * 18 16 14 22 22 N 1.33780 * 120.63522 * 359.75590 * 13 12 11 23 23 C 1.31185 * 121.50998 * 0.02562 * 22 13 12 24 24 H 1.08994 * 109.47432 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46543 * 300.00144 * 1 2 3 26 26 H 1.09003 * 109.46680 * 59.99625 * 1 2 3 27 27 H 1.08999 * 109.46888 * 60.00286 * 3 2 1 28 28 H 1.09000 * 109.46986 * 299.99958 * 3 2 1 29 29 H 1.08000 * 119.92716 * 0.02562 * 5 4 3 30 30 H 1.07998 * 119.85669 * 179.97438 * 6 5 4 31 31 H 1.08000 * 119.92781 * 179.74139 * 7 6 5 32 32 H 1.07997 * 120.08150 * 179.97438 * 8 7 6 33 33 H 1.07998 * 120.69721 * 0.02562 * 11 10 9 34 34 H 1.07996 * 120.36985 * 180.24142 * 12 11 10 35 35 H 0.97000 * 120.00135 * 179.97438 * 17 16 14 36 36 H 1.08003 * 119.65455 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.1074 -0.0584 0.0006 6 6 5.4867 -0.1694 0.0017 7 6 6.2786 0.9659 0.0019 8 6 5.6968 2.2162 0.0015 9 6 4.3054 2.3354 0.0013 10 6 3.6743 3.6737 0.0005 11 6 4.0707 4.6447 0.9319 12 6 3.4672 5.8707 0.8961 13 6 2.4645 6.1167 -0.0624 14 6 1.8323 7.3762 -0.1037 15 1 2.0427 8.1113 0.6590 16 6 0.9311 7.6742 -1.1342 17 7 0.5822 6.7460 -1.9860 18 14 0.2282 9.3978 -1.2911 19 1 1.0424 10.1783 -2.2571 20 1 -1.1734 9.3186 -1.7754 21 1 0.2570 10.0666 0.0345 22 7 2.1063 5.1667 -0.9335 23 6 2.6702 3.9822 -0.9265 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.4952 -0.9481 -0.0004 30 1 5.9474 -1.1462 0.0021 31 1 7.3545 0.8723 0.0070 32 1 6.3157 3.1013 0.0020 33 1 4.8394 4.4295 1.6593 34 1 3.7531 6.6407 1.5973 35 1 -0.0421 6.9522 -2.6992 36 1 2.3575 3.2373 -1.6433 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239953057.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:17 Heat of formation + Delta-G solvation = 6.781637 kcal Electronic energy + Delta-G solvation = -19529.838136 eV Core-core repulsion = 16557.592877 eV Total energy + Delta-G solvation = -2972.245259 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.34820 -37.87342 -37.15097 -33.92689 -32.05750 -31.39693 -30.47665 -28.87158 -27.03384 -25.57706 -25.14828 -22.35123 -21.82000 -20.88234 -20.11326 -17.61136 -16.50309 -16.23526 -15.78347 -15.42125 -15.12090 -14.41067 -14.31927 -14.10797 -13.79792 -13.43649 -12.82860 -12.64516 -12.33795 -12.25763 -12.02083 -11.72410 -11.37755 -11.31144 -11.15677 -11.06742 -10.76671 -10.59138 -10.31374 -9.97675 -9.56028 -9.51113 -8.60466 -8.30036 -8.24012 -7.69161 -7.35092 -6.57404 -4.64854 1.69320 1.87262 2.66432 2.98645 3.00099 3.03340 3.10404 3.82006 3.97973 4.24993 4.61346 5.24850 5.37874 5.46210 5.50168 5.51087 5.61995 5.70568 5.76870 5.78632 5.89497 5.95971 6.06844 6.11128 6.13845 6.46724 6.55150 6.65321 6.72850 6.84817 6.93818 6.98596 7.08513 7.26959 7.39477 7.46760 7.54195 7.69454 7.90455 8.07147 8.48625 8.76897 9.95536 10.13379 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.022227 B = 0.005125 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.406998 B = 5462.046643 C = 6408.782959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.395 6.395 3 C 0.105 3.895 4 C -0.099 4.099 5 C -0.095 4.095 6 C -0.151 4.151 7 C -0.119 4.119 8 C -0.129 4.129 9 C 0.026 3.974 10 C -0.280 4.280 11 C -0.033 4.033 12 C -0.273 4.273 13 C 0.253 3.747 14 C -0.416 4.416 15 H 0.087 0.913 16 C 0.066 3.934 17 N -0.705 5.705 18 Si 0.910 3.090 19 H -0.268 1.268 20 H -0.274 1.274 21 H -0.260 1.260 22 N -0.486 5.486 23 C 0.150 3.850 24 H 0.081 0.919 25 H 0.040 0.960 26 H 0.042 0.958 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.124 0.876 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.276 0.724 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.094 -7.918 1.950 8.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.314 6.314 3 C 0.029 3.971 4 C -0.099 4.099 5 C -0.113 4.113 6 C -0.170 4.170 7 C -0.137 4.137 8 C -0.148 4.148 9 C 0.025 3.975 10 C -0.285 4.285 11 C -0.057 4.057 12 C -0.295 4.295 13 C 0.130 3.870 14 C -0.446 4.446 15 H 0.105 0.895 16 C -0.161 4.161 17 N -0.325 5.325 18 Si 0.734 3.266 19 H -0.193 1.193 20 H -0.199 1.199 21 H -0.183 1.183 22 N -0.198 5.198 23 C -0.019 4.019 24 H 0.100 0.900 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.142 0.858 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.087 0.913 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.379 -7.844 1.173 8.051 hybrid contribution 0.255 0.761 0.535 0.965 sum 1.634 -7.084 1.709 7.468 Atomic orbital electron populations 1.22691 0.81202 1.02134 1.00335 1.87762 1.19462 1.28565 1.95588 1.21411 0.90395 0.83668 1.01581 1.19731 0.93668 0.93124 1.03366 1.20815 0.94271 0.97169 0.99068 1.20994 0.93786 0.97903 1.04279 1.20985 0.99077 0.92758 1.00889 1.21213 0.94100 0.96997 1.02444 1.18607 0.92092 0.92013 0.94766 1.19019 1.08485 0.94077 1.06928 1.20582 0.96620 0.92746 0.95738 1.21418 1.04818 0.97540 1.05742 1.18643 0.88823 0.92444 0.87117 1.19727 1.18804 0.97918 1.08184 0.89523 1.26161 0.95762 0.99001 0.95173 1.70117 1.20555 1.32845 1.08992 0.86264 0.78652 0.81847 0.79865 1.19281 1.19927 1.18347 1.68795 1.26959 0.99604 1.24451 1.22733 0.90406 0.94659 0.94059 0.90005 0.94143 0.93897 0.92005 0.91180 0.85813 0.86992 0.86946 0.86448 0.88566 0.88176 0.91285 0.86284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.39 -6.35 9.18 -35.23 -0.32 -6.68 16 3 C 0.11 1.86 4.91 36.01 0.18 2.03 16 4 C -0.10 -1.80 5.88 -104.22 -0.61 -2.41 16 5 C -0.10 -1.56 9.37 -39.64 -0.37 -1.93 16 6 C -0.15 -2.25 10.04 -39.47 -0.40 -2.64 16 7 C -0.12 -1.79 10.03 -39.63 -0.40 -2.19 16 8 C -0.13 -2.24 9.55 -39.17 -0.37 -2.62 16 9 C 0.03 0.51 5.49 -104.88 -0.58 -0.07 16 10 C -0.28 -6.11 5.13 -104.45 -0.54 -6.65 16 11 C -0.03 -0.73 9.61 -39.38 -0.38 -1.11 16 12 C -0.27 -6.48 9.76 -39.14 -0.38 -6.86 16 13 C 0.25 6.68 6.54 -84.98 -0.56 6.13 16 14 C -0.42 -10.69 9.11 -37.84 -0.34 -11.04 16 15 H 0.09 2.07 7.86 -52.49 -0.41 1.66 16 16 C 0.07 1.61 5.49 -17.33 -0.10 1.51 16 17 N -0.71 -18.04 11.47 55.55 0.64 -17.40 16 18 Si 0.91 17.77 29.57 -169.99 -5.03 12.74 16 19 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 20 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 21 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 22 N -0.49 -12.95 7.86 -10.84 -0.09 -13.04 16 23 C 0.15 3.53 9.39 -17.13 -0.16 3.37 16 24 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.07 1.28 5.52 -51.93 -0.29 1.00 16 29 H 0.12 1.90 7.00 -52.49 -0.37 1.53 16 30 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.12 1.94 8.05 -52.49 -0.42 1.52 16 33 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 34 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 35 H 0.28 6.36 8.29 -40.82 -0.34 6.02 16 36 H 0.12 2.62 6.23 -52.48 -0.33 2.29 16 LS Contribution 308.47 15.07 4.65 4.65 Total: -1.00 -28.05 308.47 -8.37 -36.42 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -4.33 Total: 6.24 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -3.89 Total: -22.94 kcal Atomic # 7 Polarization: -30.99 SS G_CDS: 0.55 Total: -30.44 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.32 Total: -6.68 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.05 -8.37 -36.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239953057.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.202 kcal (2) G-P(sol) polarization free energy of solvation -28.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds