Wall clock time and date at job start Mon Mar 30 2020 00:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 114.00211 * 2 1 4 4 C 1.50700 * 109.46942 * 179.97438 * 3 2 1 5 5 C 1.37953 * 120.07446 * 0.02562 * 4 3 2 6 6 C 1.38371 * 120.14498 * 180.02562 * 5 4 3 7 7 C 1.38419 * 120.29580 * 359.95168 * 6 5 4 8 8 C 1.37910 * 120.14871 * 0.02562 * 7 6 5 9 9 C 1.39602 * 120.07140 * 180.02562 * 4 3 2 10 10 C 1.47961 * 120.14893 * 359.96157 * 9 4 3 11 11 C 1.40260 * 120.34772 * 129.71644 * 10 9 4 12 12 C 1.36696 * 118.60266 * 179.77388 * 11 10 9 13 13 C 1.40874 * 119.25367 * 0.48604 * 12 11 10 14 14 C 1.40991 * 119.67658 * 179.73876 * 13 12 11 15 15 H 1.07999 * 120.00241 * 353.67689 * 14 13 12 16 16 C 1.40104 * 119.99551 * 173.67735 * 14 13 12 17 17 N 1.30715 * 120.00178 * 6.29881 * 16 14 13 18 18 Si 1.86803 * 119.99915 * 186.29957 * 16 14 13 19 19 H 1.48501 * 109.46759 * 94.98600 * 18 16 14 20 20 H 1.48504 * 109.47112 * 214.98361 * 18 16 14 21 21 H 1.48499 * 109.47166 * 334.98541 * 18 16 14 22 22 N 1.33780 * 120.63522 * 359.75590 * 13 12 11 23 23 C 1.31185 * 121.50998 * 0.02562 * 22 13 12 24 24 H 1.08994 * 109.47432 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46543 * 300.00144 * 1 2 3 26 26 H 1.09003 * 109.46680 * 59.99625 * 1 2 3 27 27 H 1.08999 * 109.46888 * 60.00286 * 3 2 1 28 28 H 1.09000 * 109.46986 * 299.99958 * 3 2 1 29 29 H 1.08000 * 119.92716 * 0.02562 * 5 4 3 30 30 H 1.07998 * 119.85669 * 179.97438 * 6 5 4 31 31 H 1.08000 * 119.92781 * 179.74139 * 7 6 5 32 32 H 1.07997 * 120.08150 * 179.97438 * 8 7 6 33 33 H 1.07998 * 120.69721 * 0.02562 * 11 10 9 34 34 H 1.07996 * 120.36985 * 180.24142 * 12 11 10 35 35 H 0.97000 * 120.00135 * 179.97438 * 17 16 14 36 36 H 1.08003 * 119.65455 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.1074 -0.0584 0.0006 6 6 5.4867 -0.1694 0.0017 7 6 6.2786 0.9659 0.0019 8 6 5.6968 2.2162 0.0015 9 6 4.3054 2.3354 0.0013 10 6 3.6743 3.6737 0.0005 11 6 4.0707 4.6447 0.9319 12 6 3.4672 5.8707 0.8961 13 6 2.4645 6.1167 -0.0624 14 6 1.8323 7.3762 -0.1037 15 1 2.0427 8.1113 0.6590 16 6 0.9311 7.6742 -1.1342 17 7 0.5822 6.7460 -1.9860 18 14 0.2282 9.3978 -1.2911 19 1 1.0424 10.1783 -2.2571 20 1 -1.1734 9.3186 -1.7754 21 1 0.2570 10.0666 0.0345 22 7 2.1063 5.1667 -0.9335 23 6 2.6702 3.9822 -0.9265 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.4952 -0.9481 -0.0004 30 1 5.9474 -1.1462 0.0021 31 1 7.3545 0.8723 0.0070 32 1 6.3157 3.1013 0.0020 33 1 4.8394 4.4295 1.6593 34 1 3.7531 6.6407 1.5973 35 1 -0.0421 6.9522 -2.6992 36 1 2.3575 3.2373 -1.6433 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239953057.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:16 Heat of formation + Delta-G solvation = -7.643300 kcal Electronic energy + Delta-G solvation = -19530.463648 eV Core-core repulsion = 16557.592877 eV Total energy + Delta-G solvation = -2972.870771 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.84756 -39.52766 -38.42631 -35.69519 -33.58928 -32.93089 -32.16519 -30.49821 -28.27666 -27.27493 -26.42885 -23.96373 -23.59534 -22.32395 -21.59581 -19.44803 -17.86428 -17.73213 -17.25574 -16.84569 -16.47708 -16.11493 -15.93472 -15.37898 -15.20793 -14.92699 -14.36094 -14.16348 -13.97922 -13.76435 -13.46531 -13.13305 -12.87963 -12.85933 -12.73252 -12.51425 -12.37439 -11.89662 -11.85728 -11.54391 -11.24708 -10.82940 -10.30772 -9.98219 -9.60490 -9.53477 -9.00730 -8.37321 -6.54033 0.26078 0.56381 0.96441 1.18679 1.39597 1.52946 1.54433 2.19404 2.72623 2.75795 2.98323 3.83483 3.96238 4.01674 4.11299 4.22473 4.30384 4.34214 4.40963 4.42836 4.54667 4.57554 4.68799 4.76135 4.82103 4.86089 4.93437 5.13589 5.14327 5.26281 5.41821 5.55393 5.59258 5.68117 5.79312 5.94000 6.07224 6.16943 6.21354 6.24702 6.65259 6.88858 8.10276 8.36445 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.022227 B = 0.005125 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.406998 B = 5462.046643 C = 6408.782959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.400 6.400 3 C 0.114 3.886 4 C -0.111 4.111 5 C -0.101 4.101 6 C -0.136 4.136 7 C -0.113 4.113 8 C -0.134 4.134 9 C -0.007 4.007 10 C -0.260 4.260 11 C -0.037 4.037 12 C -0.285 4.285 13 C 0.221 3.779 14 C -0.455 4.455 15 H 0.093 0.907 16 C 0.023 3.977 17 N -0.749 5.749 18 Si 0.990 3.010 19 H -0.264 1.264 20 H -0.267 1.267 21 H -0.252 1.252 22 N -0.519 5.519 23 C 0.131 3.869 24 H 0.112 0.888 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.134 0.866 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.282 0.718 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.487 -9.376 2.415 10.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C 0.038 3.962 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.154 4.154 7 C -0.131 4.131 8 C -0.152 4.152 9 C -0.008 4.008 10 C -0.266 4.266 11 C -0.060 4.060 12 C -0.308 4.308 13 C 0.097 3.903 14 C -0.485 4.485 15 H 0.111 0.889 16 C -0.200 4.200 17 N -0.370 5.370 18 Si 0.809 3.191 19 H -0.188 1.188 20 H -0.191 1.191 21 H -0.176 1.176 22 N -0.231 5.231 23 C -0.035 4.035 24 H 0.131 0.869 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.152 0.848 30 H 0.167 0.833 31 H 0.167 0.833 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.131 0.869 35 H 0.092 0.908 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.784 -9.341 1.644 9.885 hybrid contribution -0.048 0.916 0.433 1.015 sum 2.736 -8.425 2.078 9.098 Atomic orbital electron populations 1.22940 0.79532 1.04193 1.00394 1.87737 1.21268 1.27351 1.95550 1.21167 0.90851 0.84238 0.99990 1.19830 0.93628 0.93772 1.03889 1.21027 0.95457 0.96548 0.98889 1.21456 0.92995 0.99646 1.01311 1.21369 1.01022 0.91592 0.99087 1.21366 0.93102 0.98571 1.02163 1.18578 0.93326 0.90846 0.98014 1.19278 1.06778 0.95381 1.05137 1.20906 0.96913 0.92119 0.96099 1.21609 1.04670 0.98813 1.05687 1.19085 0.90090 0.93049 0.88107 1.20062 1.20510 0.98315 1.09640 0.88866 1.27080 0.95472 1.03249 0.94180 1.70211 1.21659 1.35225 1.09926 0.85086 0.77882 0.76122 0.79988 1.18830 1.19141 1.17582 1.68720 1.28341 1.00630 1.25455 1.22935 0.91360 0.94193 0.95031 0.86926 0.94009 0.93977 0.93824 0.92652 0.84779 0.83254 0.83330 0.86021 0.85758 0.86868 0.90756 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.88 16 2 O -0.40 -12.62 9.18 -148.98 -1.37 -13.99 16 3 C 0.11 4.09 4.91 71.24 0.35 4.44 16 4 C -0.11 -3.96 5.88 -19.60 -0.12 -4.07 16 5 C -0.10 -3.05 9.37 22.23 0.21 -2.85 16 6 C -0.14 -3.44 10.04 22.34 0.22 -3.22 16 7 C -0.11 -2.93 10.03 22.24 0.22 -2.71 16 8 C -0.13 -4.33 9.55 22.53 0.22 -4.12 16 9 C -0.01 -0.26 5.49 -20.03 -0.11 -0.37 16 10 C -0.26 -11.57 5.13 -19.76 -0.10 -11.67 16 11 C -0.04 -1.63 9.61 22.40 0.22 -1.41 16 12 C -0.29 -13.91 9.76 22.55 0.22 -13.69 16 13 C 0.22 12.17 6.54 40.17 0.26 12.43 16 14 C -0.45 -24.30 9.11 23.40 0.21 -24.09 16 15 H 0.09 4.61 7.86 -2.91 -0.02 4.59 16 16 C 0.02 1.15 5.49 85.31 0.47 1.62 16 17 N -0.75 -39.98 11.47 21.85 0.25 -39.73 16 18 Si 0.99 37.16 29.57 68.60 2.03 39.19 16 19 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 20 H -0.27 -9.57 7.11 99.48 0.71 -8.87 16 21 H -0.25 -9.05 7.11 99.48 0.71 -8.35 16 22 N -0.52 -29.04 7.86 -188.22 -1.48 -30.52 16 23 C 0.13 6.45 9.39 85.24 0.80 7.25 16 24 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.06 2.13 5.52 -2.39 -0.01 2.12 16 29 H 0.13 3.74 7.00 -2.91 -0.02 3.72 16 30 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 31 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 32 H 0.12 3.77 8.05 -2.91 -0.02 3.74 16 33 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 34 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 35 H 0.28 13.51 8.29 -92.71 -0.77 12.74 16 36 H 0.13 5.80 6.23 -2.91 -0.02 5.78 16 Total: -1.00 -62.96 308.47 4.84 -58.12 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 1.08 Total: 27.49 kcal Atomic # 6 Polarization: -44.90 SS G_CDS: 4.32 Total: -40.58 kcal Atomic # 7 Polarization: -69.02 SS G_CDS: -1.23 Total: -70.24 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -1.37 Total: -13.99 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 2.03 Total: 39.19 kcal Total: -62.96 4.84 -58.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239953057.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.479 kcal (2) G-P(sol) polarization free energy of solvation -62.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds