Wall clock time and date at job start Mon Mar 30 2020 00:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42893 * 114.00259 * 2 1 4 4 C 1.50699 * 109.47277 * 180.02562 * 3 2 1 5 5 C 1.37942 * 120.07669 * 354.63510 * 4 3 2 6 6 C 1.38382 * 120.14955 * 179.74516 * 5 4 3 7 7 C 1.38422 * 120.30436 * 0.56308 * 6 5 4 8 8 C 1.37893 * 120.15188 * 359.69753 * 7 6 5 9 9 C 1.39651 * 120.07999 * 174.92078 * 4 3 2 10 10 C 1.47855 * 120.14705 * 359.97438 * 9 4 3 11 11 C 1.39301 * 120.78115 * 249.14971 * 10 9 4 12 12 N 1.31684 * 120.66104 * 179.73193 * 11 10 9 13 13 C 1.32212 * 122.49949 * 0.58731 * 12 11 10 14 14 C 1.36487 * 121.50556 * 359.68139 * 13 12 11 15 15 C 1.41123 * 119.11064 * 0.02562 * 14 13 12 16 16 C 1.40931 * 121.10955 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99805 * 150.12275 * 16 15 14 18 18 C 1.40185 * 119.99943 * 330.12440 * 16 15 14 19 19 N 1.30685 * 119.99995 * 168.10274 * 18 16 15 20 20 Si 1.86800 * 120.00071 * 348.09594 * 18 16 15 21 21 H 1.48507 * 109.46715 * 92.64332 * 20 18 16 22 22 H 1.48498 * 109.47365 * 212.64304 * 20 18 16 23 23 H 1.48499 * 109.47254 * 332.64813 * 20 18 16 24 24 H 1.09001 * 109.47423 * 59.99922 * 1 2 3 25 25 H 1.09001 * 109.47840 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46994 * 299.99821 * 1 2 3 27 27 H 1.09001 * 109.47192 * 300.00364 * 3 2 1 28 28 H 1.09002 * 109.47031 * 60.00349 * 3 2 1 29 29 H 1.08002 * 119.92065 * 0.03031 * 5 4 3 30 30 H 1.07999 * 119.84385 * 180.28232 * 6 5 4 31 31 H 1.08001 * 119.92223 * 179.72149 * 7 6 5 32 32 H 1.07997 * 120.07552 * 180.02562 * 8 7 6 33 33 H 1.07999 * 119.67313 * 0.02562 * 11 10 9 34 34 H 1.07990 * 119.24534 * 179.70140 * 13 12 11 35 35 H 1.08005 * 120.44874 * 180.02562 * 14 13 12 36 36 H 0.96991 * 119.99839 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.1078 -0.0530 0.1105 6 6 5.4871 -0.1645 0.1048 7 6 6.2789 0.9660 -0.0006 8 6 5.6970 2.2116 -0.1070 9 6 4.3053 2.3310 -0.1077 10 6 3.6743 3.6633 -0.2214 11 6 3.7474 4.3877 -1.4090 12 7 3.1801 5.5719 -1.5093 13 6 2.5309 6.1359 -0.5051 14 6 2.4055 5.5129 0.7028 15 6 2.9837 4.2379 0.8810 16 6 2.8795 3.5565 2.1103 17 1 2.8682 2.4768 2.1298 18 6 2.7904 4.2803 3.3075 19 7 2.4624 3.6713 4.4163 20 14 3.1408 6.1151 3.3181 21 1 1.8717 6.8624 3.1271 22 1 3.7485 6.4956 4.6185 23 1 4.0805 6.4460 2.2168 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.6886 1.8463 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 3.4960 -0.9387 0.1975 30 1 5.9480 -1.1378 0.1875 31 1 7.3548 0.8722 0.0001 32 1 6.3159 3.0928 -0.1896 33 1 4.2706 3.9721 -2.2575 34 1 2.0894 7.1116 -0.6439 35 1 1.8711 5.9893 1.5115 36 1 2.4004 4.1721 5.2446 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239953664.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:35 Heat of formation + Delta-G solvation = 1.550804 kcal Electronic energy + Delta-G solvation = -20285.352337 eV Core-core repulsion = 17312.880252 eV Total energy + Delta-G solvation = -2972.472085 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.42544 -38.07478 -37.00226 -34.21199 -32.42025 -31.12843 -31.11276 -28.56681 -26.89990 -26.01658 -24.80081 -22.95408 -21.66705 -20.93261 -19.95620 -17.89474 -16.53362 -16.07478 -15.77105 -15.42343 -15.06588 -14.74040 -14.33312 -14.11677 -13.88871 -13.60287 -13.07212 -12.67711 -12.61991 -12.55836 -12.15544 -11.65270 -11.52589 -11.29985 -11.05209 -10.99509 -10.70064 -10.51759 -10.34784 -9.90207 -9.47143 -9.35487 -8.50159 -8.33987 -8.12565 -7.98169 -7.58747 -7.16506 -4.83903 1.85973 2.02813 2.39230 2.52645 2.97644 3.08541 3.17309 3.79452 4.14024 4.36373 4.45388 5.19703 5.41461 5.44620 5.51715 5.58066 5.63265 5.65175 5.72668 5.87387 5.94719 6.00156 6.08703 6.20429 6.27977 6.33999 6.46599 6.59881 6.68956 6.84087 6.87312 7.04355 7.06922 7.13554 7.27721 7.46181 7.63123 7.65292 7.82365 8.11176 8.32666 8.51764 9.27967 9.82881 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.008122 C = 0.007608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.547849 B = 3446.633729 C = 3679.637435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.394 6.394 3 C 0.098 3.902 4 C -0.075 4.075 5 C -0.101 4.101 6 C -0.141 4.141 7 C -0.125 4.125 8 C -0.116 4.116 9 C 0.024 3.976 10 C -0.220 4.220 11 C 0.136 3.864 12 N -0.577 5.577 13 C 0.115 3.885 14 C -0.285 4.285 15 C 0.122 3.878 16 C -0.427 4.427 17 H 0.104 0.896 18 C 0.085 3.915 19 N -0.790 5.790 20 Si 0.916 3.084 21 H -0.268 1.268 22 H -0.290 1.290 23 H -0.243 1.243 24 H 0.037 0.963 25 H 0.080 0.920 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.124 0.876 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.108 0.892 36 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.545 -3.684 -4.099 5.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.313 6.313 3 C 0.023 3.977 4 C -0.076 4.076 5 C -0.119 4.119 6 C -0.159 4.159 7 C -0.143 4.143 8 C -0.134 4.134 9 C 0.023 3.977 10 C -0.225 4.225 11 C -0.019 4.019 12 N -0.292 5.292 13 C -0.035 4.035 14 C -0.307 4.307 15 C 0.114 3.886 16 C -0.456 4.456 17 H 0.122 0.878 18 C -0.137 4.137 19 N -0.413 5.413 20 Si 0.742 3.258 21 H -0.194 1.194 22 H -0.217 1.217 23 H -0.166 1.166 24 H 0.056 0.944 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.142 0.858 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.135 0.865 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.125 0.875 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.642 -3.427 -4.610 5.780 hybrid contribution -0.206 0.562 1.189 1.331 sum 0.436 -2.865 -3.421 4.484 Atomic orbital electron populations 1.22660 0.81480 1.01994 1.00106 1.87748 1.19262 1.28728 1.95602 1.21492 0.90383 0.83718 1.02134 1.19730 0.93732 0.93025 1.01077 1.20812 0.94282 0.97263 0.99516 1.21011 0.93787 0.97953 1.03144 1.20939 0.99039 0.92772 1.01510 1.21163 0.93866 0.97015 1.01362 1.18289 0.92042 0.91435 0.95886 1.19493 1.09064 0.96742 0.97250 1.22199 0.94839 0.90074 0.94761 1.67424 1.16469 1.12804 1.32460 1.21655 0.94736 0.97727 0.89426 1.21618 1.10035 0.99990 0.99060 1.17823 0.87403 0.90614 0.92808 1.19651 1.40214 0.97012 0.88721 0.87804 1.26274 0.90794 1.01665 0.94988 1.69573 1.31157 1.39819 1.00740 0.86267 0.80351 0.81192 0.77947 1.19390 1.21739 1.16634 0.94449 0.90132 0.93887 0.92692 0.89462 0.85831 0.86990 0.86915 0.86481 0.85520 0.85901 0.87465 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.39 -7.10 9.20 -35.23 -0.32 -7.42 16 3 C 0.10 1.93 5.06 36.00 0.18 2.12 16 4 C -0.08 -1.52 5.05 -104.20 -0.53 -2.04 16 5 C -0.10 -1.84 9.37 -39.64 -0.37 -2.21 16 6 C -0.14 -2.31 10.04 -39.46 -0.40 -2.70 16 7 C -0.12 -2.05 10.03 -39.64 -0.40 -2.45 16 8 C -0.12 -2.16 9.79 -39.17 -0.38 -2.55 16 9 C 0.02 0.50 4.63 -104.89 -0.49 0.02 16 10 C -0.22 -4.89 4.53 -104.04 -0.47 -5.36 16 11 C 0.14 2.91 10.95 -17.22 -0.19 2.72 16 12 N -0.58 -12.79 10.32 -13.37 -0.14 -12.93 16 13 C 0.11 2.49 11.09 -18.02 -0.20 2.29 16 14 C -0.28 -6.52 7.02 -39.12 -0.27 -6.79 16 15 C 0.12 2.90 4.77 -106.26 -0.51 2.39 16 16 C -0.43 -10.71 7.98 -37.83 -0.30 -11.01 16 17 H 0.10 2.76 5.45 -52.49 -0.29 2.47 16 18 C 0.08 2.09 5.49 -17.31 -0.09 2.00 16 19 N -0.79 -19.78 13.92 55.56 0.77 -19.01 16 20 Si 0.92 19.81 24.40 -169.99 -4.15 15.66 16 21 H -0.27 -5.56 6.68 56.52 0.38 -5.18 16 22 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.24 -5.48 6.59 56.52 0.37 -5.10 16 24 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.04 0.62 8.14 -51.92 -0.42 0.19 16 27 H 0.06 1.08 8.04 -51.93 -0.42 0.66 16 28 H 0.09 1.91 5.39 -51.93 -0.28 1.63 16 29 H 0.12 2.14 7.02 -52.49 -0.37 1.77 16 30 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 31 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.12 2.06 8.06 -52.49 -0.42 1.63 16 33 H 0.13 2.40 8.06 -52.49 -0.42 1.98 16 34 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 35 H 0.11 2.40 4.31 -52.48 -0.23 2.17 16 36 H 0.29 6.57 8.29 -40.82 -0.34 6.23 16 LS Contribution 298.24 15.07 4.49 4.49 Total: -1.00 -27.00 298.24 -6.79 -33.80 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -4.15 Total: 7.39 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -3.30 Total: -21.98 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: 0.64 Total: -31.93 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.32 Total: -7.42 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.15 Total: 15.66 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.00 -6.79 -33.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239953664.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.348 kcal (2) G-P(sol) polarization free energy of solvation -27.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds