Wall clock time and date at job start Mon Mar 30 2020 00:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42893 * 114.00259 * 2 1 4 4 C 1.50699 * 109.47277 * 180.02562 * 3 2 1 5 5 C 1.37942 * 120.07669 * 354.63510 * 4 3 2 6 6 C 1.38382 * 120.14955 * 179.74516 * 5 4 3 7 7 C 1.38422 * 120.30436 * 0.56308 * 6 5 4 8 8 C 1.37893 * 120.15188 * 359.69753 * 7 6 5 9 9 C 1.39651 * 120.07999 * 174.92078 * 4 3 2 10 10 C 1.47855 * 120.14705 * 359.97438 * 9 4 3 11 11 C 1.39301 * 120.78115 * 249.14971 * 10 9 4 12 12 N 1.31684 * 120.66104 * 179.73193 * 11 10 9 13 13 C 1.32212 * 122.49949 * 0.58731 * 12 11 10 14 14 C 1.36487 * 121.50556 * 359.68139 * 13 12 11 15 15 C 1.41123 * 119.11064 * 0.02562 * 14 13 12 16 16 C 1.40931 * 121.10955 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99805 * 150.12275 * 16 15 14 18 18 C 1.40185 * 119.99943 * 330.12440 * 16 15 14 19 19 N 1.30685 * 119.99995 * 168.10274 * 18 16 15 20 20 Si 1.86800 * 120.00071 * 348.09594 * 18 16 15 21 21 H 1.48507 * 109.46715 * 92.64332 * 20 18 16 22 22 H 1.48498 * 109.47365 * 212.64304 * 20 18 16 23 23 H 1.48499 * 109.47254 * 332.64813 * 20 18 16 24 24 H 1.09001 * 109.47423 * 59.99922 * 1 2 3 25 25 H 1.09001 * 109.47840 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46994 * 299.99821 * 1 2 3 27 27 H 1.09001 * 109.47192 * 300.00364 * 3 2 1 28 28 H 1.09002 * 109.47031 * 60.00349 * 3 2 1 29 29 H 1.08002 * 119.92065 * 0.03031 * 5 4 3 30 30 H 1.07999 * 119.84385 * 180.28232 * 6 5 4 31 31 H 1.08001 * 119.92223 * 179.72149 * 7 6 5 32 32 H 1.07997 * 120.07552 * 180.02562 * 8 7 6 33 33 H 1.07999 * 119.67313 * 0.02562 * 11 10 9 34 34 H 1.07990 * 119.24534 * 179.70140 * 13 12 11 35 35 H 1.08005 * 120.44874 * 180.02562 * 14 13 12 36 36 H 0.96991 * 119.99839 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.1078 -0.0530 0.1105 6 6 5.4871 -0.1645 0.1048 7 6 6.2789 0.9660 -0.0006 8 6 5.6970 2.2116 -0.1070 9 6 4.3053 2.3310 -0.1077 10 6 3.6743 3.6633 -0.2214 11 6 3.7474 4.3877 -1.4090 12 7 3.1801 5.5719 -1.5093 13 6 2.5309 6.1359 -0.5051 14 6 2.4055 5.5129 0.7028 15 6 2.9837 4.2379 0.8810 16 6 2.8795 3.5565 2.1103 17 1 2.8682 2.4768 2.1298 18 6 2.7904 4.2803 3.3075 19 7 2.4624 3.6713 4.4163 20 14 3.1408 6.1151 3.3181 21 1 1.8717 6.8624 3.1271 22 1 3.7485 6.4956 4.6185 23 1 4.0805 6.4460 2.2168 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.6886 1.8463 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 3.4960 -0.9387 0.1975 30 1 5.9480 -1.1378 0.1875 31 1 7.3548 0.8722 0.0001 32 1 6.3159 3.0928 -0.1896 33 1 4.2706 3.9721 -2.2575 34 1 2.0894 7.1116 -0.6439 35 1 1.8711 5.9893 1.5115 36 1 2.4004 4.1721 5.2446 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239953664.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:34 Heat of formation + Delta-G solvation = -13.510164 kcal Electronic energy + Delta-G solvation = -20286.005429 eV Core-core repulsion = 17312.880252 eV Total energy + Delta-G solvation = -2973.125178 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.01584 -39.64992 -38.39617 -36.01516 -34.02351 -32.86469 -32.55125 -30.14230 -28.32504 -27.66751 -26.23099 -24.56518 -23.39516 -22.41752 -21.48203 -19.70747 -18.09667 -17.59373 -17.27888 -16.91573 -16.58984 -16.36744 -16.05306 -15.53856 -15.37909 -15.10485 -14.75475 -14.36291 -14.16412 -14.01851 -13.47990 -13.39551 -12.97345 -12.81311 -12.75020 -12.56145 -12.36688 -11.90893 -11.85075 -11.64461 -11.20552 -10.78207 -10.16096 -10.11779 -9.71146 -9.54551 -9.14357 -8.99334 -6.70640 0.33533 0.60227 0.73070 0.77357 1.22896 1.37124 1.43436 2.03922 2.62078 2.77970 2.95502 3.43682 3.84157 4.01089 4.10544 4.24322 4.28095 4.31213 4.36886 4.45874 4.53647 4.58270 4.63515 4.71694 4.74228 4.76775 4.87613 5.07776 5.12302 5.25918 5.29067 5.34467 5.61226 5.68182 5.73658 5.83775 6.05782 6.19226 6.22514 6.27620 6.53145 6.65780 7.53147 8.05450 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.008122 C = 0.007608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.547849 B = 3446.633729 C = 3679.637435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.111 3.889 4 C -0.097 4.097 5 C -0.111 4.111 6 C -0.133 4.133 7 C -0.118 4.118 8 C -0.127 4.127 9 C -0.004 4.004 10 C -0.217 4.217 11 C 0.130 3.870 12 N -0.579 5.579 13 C 0.113 3.887 14 C -0.298 4.298 15 C 0.110 3.890 16 C -0.448 4.448 17 H 0.077 0.923 18 C 0.053 3.947 19 N -0.827 5.827 20 Si 0.963 3.037 21 H -0.252 1.252 22 H -0.280 1.280 23 H -0.257 1.257 24 H 0.047 0.953 25 H 0.111 0.889 26 H 0.035 0.965 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.130 0.870 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.124 0.876 33 H 0.151 0.849 34 H 0.157 0.843 35 H 0.111 0.889 36 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.599 -3.763 -5.117 6.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C 0.036 3.964 4 C -0.097 4.097 5 C -0.129 4.129 6 C -0.150 4.150 7 C -0.136 4.136 8 C -0.145 4.145 9 C -0.005 4.005 10 C -0.221 4.221 11 C -0.025 4.025 12 N -0.293 5.293 13 C -0.038 4.038 14 C -0.320 4.320 15 C 0.102 3.898 16 C -0.478 4.478 17 H 0.095 0.905 18 C -0.166 4.166 19 N -0.452 5.452 20 Si 0.788 3.212 21 H -0.178 1.178 22 H -0.207 1.207 23 H -0.181 1.181 24 H 0.066 0.934 25 H 0.130 0.870 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.148 0.852 30 H 0.167 0.833 31 H 0.168 0.832 32 H 0.142 0.858 33 H 0.168 0.832 34 H 0.174 0.826 35 H 0.129 0.871 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.684 -3.519 -5.630 6.850 hybrid contribution -0.514 0.478 1.368 1.538 sum 1.171 -3.041 -4.262 5.365 Atomic orbital electron populations 1.22922 0.79613 1.04123 1.00281 1.87723 1.21328 1.27655 1.95573 1.21182 0.90895 0.84158 1.00211 1.19867 0.93764 0.93865 1.02202 1.21019 0.95581 0.96685 0.99618 1.21443 0.92920 0.99729 1.00942 1.21343 1.00979 0.91668 0.99566 1.21368 0.93078 0.98542 1.01516 1.18395 0.93188 0.90863 0.98079 1.19758 1.08038 0.97444 0.96892 1.22584 0.94741 0.89914 0.95227 1.67509 1.16208 1.13031 1.32597 1.22137 0.94184 0.98863 0.88664 1.21771 1.10399 0.99905 0.99956 1.18013 0.87622 0.91277 0.92921 1.19551 1.42459 0.95938 0.89877 0.90484 1.26860 0.90466 1.04704 0.94534 1.69597 1.32952 1.41233 1.01415 0.85543 0.80424 0.77584 0.77693 1.17775 1.20671 1.18089 0.93386 0.87026 0.94605 0.93460 0.92481 0.85246 0.83343 0.83212 0.85824 0.83194 0.82614 0.87113 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.40 -14.69 9.20 -148.98 -1.37 -16.06 16 3 C 0.11 4.56 5.06 71.24 0.36 4.92 16 4 C -0.10 -3.94 5.05 -19.59 -0.10 -4.04 16 5 C -0.11 -3.96 9.37 22.23 0.21 -3.75 16 6 C -0.13 -3.98 10.04 22.35 0.22 -3.75 16 7 C -0.12 -3.54 10.03 22.23 0.22 -3.32 16 8 C -0.13 -4.58 9.79 22.54 0.22 -4.36 16 9 C 0.00 -0.18 4.63 -20.04 -0.09 -0.28 16 10 C -0.22 -9.67 4.53 -19.49 -0.09 -9.76 16 11 C 0.13 5.43 10.95 84.97 0.93 6.36 16 12 N -0.58 -24.78 10.32 -196.20 -2.02 -26.80 16 13 C 0.11 4.69 11.09 84.23 0.93 5.63 16 14 C -0.30 -13.53 7.02 22.57 0.16 -13.37 16 15 C 0.11 5.31 4.77 -20.92 -0.10 5.21 16 16 C -0.45 -23.37 7.98 23.40 0.19 -23.19 16 17 H 0.08 4.35 5.45 -2.91 -0.02 4.34 16 18 C 0.05 2.65 5.49 85.34 0.47 3.12 16 19 N -0.83 -42.65 13.92 21.87 0.30 -42.35 16 20 Si 0.96 40.74 24.40 68.60 1.67 42.41 16 21 H -0.25 -9.95 6.68 99.48 0.66 -9.29 16 22 H -0.28 -11.23 7.11 99.48 0.71 -10.53 16 23 H -0.26 -11.33 6.59 99.48 0.66 -10.68 16 24 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.05 1.94 8.04 -2.39 -0.02 1.92 16 28 H 0.06 2.68 5.39 -2.39 -0.01 2.66 16 29 H 0.13 4.36 7.02 -2.91 -0.02 4.34 16 30 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 31 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 32 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 33 H 0.15 5.46 8.06 -2.91 -0.02 5.44 16 34 H 0.16 5.36 8.06 -2.92 -0.02 5.34 16 35 H 0.11 4.88 4.31 -2.91 -0.01 4.87 16 36 H 0.30 13.80 8.29 -92.72 -0.77 13.03 16 Total: -1.00 -58.79 298.24 4.37 -54.42 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 1.00 Total: 26.94 kcal Atomic # 6 Polarization: -43.35 SS G_CDS: 4.78 Total: -38.57 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -1.72 Total: -69.15 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -1.37 Total: -16.06 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 1.67 Total: 42.41 kcal Total: -58.79 4.37 -54.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239953664.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.914 kcal (2) G-P(sol) polarization free energy of solvation -58.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds