Wall clock time and date at job start Mon Mar 30 2020 00:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35683 * 116.99762 * 2 1 4 4 C 1.38714 * 119.62855 * 179.97438 * 3 2 1 5 5 C 1.39512 * 118.97082 * 179.97438 * 4 3 2 6 6 C 1.48384 * 120.87237 * 180.02562 * 5 4 3 7 7 C 1.39334 * 120.12093 * 180.02562 * 6 5 4 8 8 C 1.38015 * 119.87947 * 180.02562 * 7 6 5 9 9 C 1.38322 * 120.11935 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.87838 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47064 * 89.99928 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.38328 * 120.24573 * 0.27689 * 9 8 7 20 20 C 1.38015 * 120.11739 * 359.44494 * 19 9 8 21 21 C 1.39922 * 118.25088 * 0.27736 * 5 4 3 22 22 C 1.37821 * 119.15328 * 359.45229 * 21 5 4 23 23 N 1.32016 * 120.95383 * 0.56146 * 22 21 5 24 24 H 1.09002 * 109.46891 * 300.00022 * 1 2 3 25 25 H 1.09000 * 109.46769 * 60.00147 * 1 2 3 26 26 H 1.09001 * 109.46892 * 179.97438 * 1 2 3 27 27 H 1.07998 * 120.51246 * 0.02562 * 4 3 2 28 28 H 1.08008 * 120.06154 * 359.97438 * 7 6 5 29 29 H 1.08000 * 119.94043 * 179.97438 * 8 7 6 30 30 H 1.09002 * 109.47152 * 330.00021 * 10 9 8 31 31 H 1.09001 * 109.46980 * 210.00122 * 10 9 8 32 32 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 33 33 H 1.07997 * 119.93748 * 179.72934 * 19 9 8 34 34 H 1.08000 * 120.06306 * 180.27029 * 20 19 9 35 35 H 1.07999 * 120.42148 * 179.70809 * 21 5 4 36 36 H 1.07995 * 119.52272 * 180.27427 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4307 1.2726 0.0005 5 6 4.0497 2.5229 0.0000 6 6 5.5289 2.6402 0.0000 7 6 6.1307 3.8969 -0.0001 8 6 7.5070 4.0001 -0.0006 9 6 8.2887 2.8590 -0.0006 10 6 9.7910 2.9780 -0.0007 11 6 10.2918 3.0178 1.4202 12 1 9.5922 2.9619 2.2411 13 6 11.6431 3.1243 1.6721 14 7 12.4950 3.1918 0.6724 15 14 12.2639 3.1728 3.4332 16 1 11.8659 1.9249 4.1329 17 1 13.7443 3.2903 3.4332 18 1 11.6750 4.3424 4.1337 19 6 7.6966 1.6088 -0.0058 20 6 6.3212 1.4939 0.0005 21 6 3.2390 3.6633 0.0049 22 6 1.8690 3.5132 -0.0015 23 7 1.3173 2.3138 -0.0010 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.0212 0.3684 0.0005 28 1 5.5213 4.7886 -0.0005 29 1 7.9745 4.9737 -0.0010 30 1 10.0829 3.8940 -0.5145 31 1 10.2235 2.1195 -0.5145 32 1 13.4457 3.2672 0.8497 33 1 8.3117 0.7211 -0.0102 34 1 5.8599 0.5174 0.0008 35 1 3.6812 4.6486 0.0094 36 1 1.2376 4.3894 -0.0023 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240256732.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:24 Heat of formation + Delta-G solvation = 11.074843 kcal Electronic energy + Delta-G solvation = -18701.135772 eV Core-core repulsion = 15729.076680 eV Total energy + Delta-G solvation = -2972.059092 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.68577 -38.91158 -37.73314 -34.18110 -32.74047 -31.19417 -30.47102 -30.16941 -27.58610 -26.82469 -24.09107 -23.68253 -22.15152 -21.59340 -20.24501 -18.24887 -17.01713 -16.47231 -16.29250 -16.09720 -15.31440 -14.88875 -14.68787 -14.17527 -14.05918 -13.88161 -13.63130 -13.07381 -12.70089 -12.58070 -12.24744 -12.01615 -11.82751 -11.38985 -11.32255 -11.24605 -10.74837 -10.61412 -10.27703 -10.15885 -9.73080 -9.60673 -9.41921 -8.60413 -8.48938 -8.44710 -7.69652 -6.10326 -4.15035 0.77190 1.15147 1.92767 2.26616 2.97707 3.28688 3.33026 3.36139 3.76054 4.22536 4.33442 4.49367 4.63604 4.96830 5.02090 5.04594 5.13268 5.13779 5.24196 5.30677 5.38876 5.49119 5.70404 5.80456 5.86844 5.88751 6.06379 6.26594 6.33193 6.48577 6.58652 6.94790 7.02723 7.05557 7.14250 7.40462 7.56415 7.73065 7.78843 7.84828 8.23077 8.89876 9.49281 10.99390 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035972 B = 0.003312 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.193309 B = 8451.650453 C = 8646.248642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.310 6.310 3 C 0.321 3.679 4 C -0.194 4.194 5 C 0.061 3.939 6 C -0.104 4.104 7 C -0.094 4.094 8 C -0.128 4.128 9 C -0.013 4.013 10 C 0.044 3.956 11 C -0.515 4.515 12 H 0.057 0.943 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.128 4.128 20 C -0.094 4.094 21 C -0.211 4.211 22 C 0.139 3.861 23 N -0.554 5.554 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.093 0.907 27 H 0.142 0.858 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.031 0.969 31 H 0.031 0.969 32 H 0.264 0.736 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.139 0.861 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.213 -1.715 -2.466 20.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.217 6.217 3 C 0.143 3.857 4 C -0.215 4.215 5 C 0.053 3.947 6 C -0.104 4.104 7 C -0.112 4.112 8 C -0.146 4.146 9 C -0.013 4.013 10 C 0.007 3.993 11 C -0.553 4.553 12 H 0.076 0.924 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.724 3.276 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.146 4.146 20 C -0.113 4.113 21 C -0.231 4.231 22 C -0.015 4.015 23 N -0.278 5.278 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.112 0.888 27 H 0.160 0.840 28 H 0.136 0.864 29 H 0.141 0.859 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.157 0.843 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -20.838 -2.060 -2.510 21.089 hybrid contribution 1.063 0.234 1.004 1.480 sum -19.775 -1.826 -1.507 19.916 Atomic orbital electron populations 1.22814 0.77505 1.02688 1.02324 1.86240 1.22699 1.24752 1.88043 1.19657 0.89115 0.84606 0.92332 1.21079 0.91782 0.99138 1.09461 1.19014 0.93011 0.91828 0.90815 1.18362 0.89679 0.94207 1.08130 1.21110 0.94971 0.95875 0.99222 1.21068 0.92626 0.99161 1.01764 1.20902 0.99185 0.91956 0.89267 1.18431 0.84349 0.98568 0.97922 1.20988 0.91868 1.51199 0.91258 0.92444 1.25007 0.96839 0.95034 0.97350 1.69942 1.02596 1.49815 1.30825 0.86576 0.77591 0.78791 0.84619 1.20103 1.21180 1.20116 1.21077 0.93688 0.98118 1.01695 1.21151 0.93875 0.97169 0.99057 1.22060 0.94421 0.99575 1.07082 1.22229 0.92671 0.93409 0.93187 1.67225 1.41058 0.98841 1.20700 0.92428 0.92440 0.88828 0.84001 0.86426 0.85860 0.95071 0.95073 0.92680 0.85861 0.86439 0.84315 0.82488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.38 101.05 1.05 1.43 16 2 O -0.31 -3.89 10.47 -18.75 -0.20 -4.09 16 3 C 0.32 4.37 7.48 -17.18 -0.13 4.24 16 4 C -0.19 -2.67 9.43 -38.93 -0.37 -3.03 16 5 C 0.06 0.85 5.91 -104.61 -0.62 0.23 16 6 C -0.10 -1.63 5.88 -104.90 -0.62 -2.24 16 7 C -0.09 -1.48 9.45 -39.26 -0.37 -1.85 16 8 C -0.13 -2.36 9.68 -39.63 -0.38 -2.74 16 9 C -0.01 -0.27 5.07 -104.56 -0.53 -0.80 16 10 C 0.04 1.10 5.10 -29.03 -0.15 0.95 16 11 C -0.52 -14.07 9.09 -34.44 -0.31 -14.39 16 12 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 15 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 C -0.13 -2.38 9.68 -39.63 -0.38 -2.77 16 20 C -0.09 -1.53 9.45 -39.25 -0.37 -1.90 16 21 C -0.21 -2.53 9.49 -39.10 -0.37 -2.90 16 22 C 0.14 1.56 11.16 -17.63 -0.20 1.37 16 23 N -0.55 -7.19 9.20 -13.41 -0.12 -7.31 16 24 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 25 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 26 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.14 1.79 6.34 -52.49 -0.33 1.46 16 28 H 0.12 1.50 6.30 -52.48 -0.33 1.17 16 29 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 30 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 31 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 34 H 0.12 1.61 6.30 -52.49 -0.33 1.28 16 35 H 0.14 1.38 6.34 -52.49 -0.33 1.05 16 36 H 0.16 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 312.54 15.07 4.71 4.71 Total: -1.00 -30.38 312.54 -7.98 -38.37 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -4.24 Total: 0.15 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -3.85 Total: -22.85 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.61 Total: -32.46 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -0.20 Total: -4.09 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.38 -7.98 -38.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240256732.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.441 kcal (2) G-P(sol) polarization free energy of solvation -30.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds