Wall clock time and date at job start Mon Mar 30 2020 00:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35683 * 116.99762 * 2 1 4 4 C 1.38714 * 119.62855 * 179.97438 * 3 2 1 5 5 C 1.39512 * 118.97082 * 179.97438 * 4 3 2 6 6 C 1.48384 * 120.87237 * 180.02562 * 5 4 3 7 7 C 1.39334 * 120.12093 * 180.02562 * 6 5 4 8 8 C 1.38015 * 119.87947 * 180.02562 * 7 6 5 9 9 C 1.38322 * 120.11935 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.87838 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47064 * 89.99928 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.38328 * 120.24573 * 0.27689 * 9 8 7 20 20 C 1.38015 * 120.11739 * 359.44494 * 19 9 8 21 21 C 1.39922 * 118.25088 * 0.27736 * 5 4 3 22 22 C 1.37821 * 119.15328 * 359.45229 * 21 5 4 23 23 N 1.32016 * 120.95383 * 0.56146 * 22 21 5 24 24 H 1.09002 * 109.46891 * 300.00022 * 1 2 3 25 25 H 1.09000 * 109.46769 * 60.00147 * 1 2 3 26 26 H 1.09001 * 109.46892 * 179.97438 * 1 2 3 27 27 H 1.07998 * 120.51246 * 0.02562 * 4 3 2 28 28 H 1.08008 * 120.06154 * 359.97438 * 7 6 5 29 29 H 1.08000 * 119.94043 * 179.97438 * 8 7 6 30 30 H 1.09002 * 109.47152 * 330.00021 * 10 9 8 31 31 H 1.09001 * 109.46980 * 210.00122 * 10 9 8 32 32 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 33 33 H 1.07997 * 119.93748 * 179.72934 * 19 9 8 34 34 H 1.08000 * 120.06306 * 180.27029 * 20 19 9 35 35 H 1.07999 * 120.42148 * 179.70809 * 21 5 4 36 36 H 1.07995 * 119.52272 * 180.27427 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4307 1.2726 0.0005 5 6 4.0497 2.5229 0.0000 6 6 5.5289 2.6402 0.0000 7 6 6.1307 3.8969 -0.0001 8 6 7.5070 4.0001 -0.0006 9 6 8.2887 2.8590 -0.0006 10 6 9.7910 2.9780 -0.0007 11 6 10.2918 3.0178 1.4202 12 1 9.5922 2.9619 2.2411 13 6 11.6431 3.1243 1.6721 14 7 12.4950 3.1918 0.6724 15 14 12.2639 3.1728 3.4332 16 1 11.8659 1.9249 4.1329 17 1 13.7443 3.2903 3.4332 18 1 11.6750 4.3424 4.1337 19 6 7.6966 1.6088 -0.0058 20 6 6.3212 1.4939 0.0005 21 6 3.2390 3.6633 0.0049 22 6 1.8690 3.5132 -0.0015 23 7 1.3173 2.3138 -0.0010 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.0212 0.3684 0.0005 28 1 5.5213 4.7886 -0.0005 29 1 7.9745 4.9737 -0.0010 30 1 10.0829 3.8940 -0.5145 31 1 10.2235 2.1195 -0.5145 32 1 13.4457 3.2672 0.8497 33 1 8.3117 0.7211 -0.0102 34 1 5.8599 0.5174 0.0008 35 1 3.6812 4.6486 0.0094 36 1 1.2376 4.3894 -0.0023 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240256732.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:24 Heat of formation + Delta-G solvation = -6.555346 kcal Electronic energy + Delta-G solvation = -18701.900275 eV Core-core repulsion = 15729.076680 eV Total energy + Delta-G solvation = -2972.823594 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.65517 -40.17786 -38.72534 -35.77907 -34.39340 -32.32818 -31.96614 -31.32762 -28.88645 -27.99233 -25.65043 -24.81831 -23.53320 -22.83725 -21.60773 -19.26359 -18.52497 -17.97410 -17.45857 -16.96457 -16.66897 -16.41304 -15.94911 -15.61865 -15.05684 -14.92361 -14.65706 -14.43695 -14.32525 -14.02629 -13.52767 -13.30427 -13.16613 -12.96313 -12.67600 -12.52473 -12.39169 -12.16257 -11.70748 -11.67853 -11.44396 -11.03325 -10.67712 -10.61127 -9.80683 -9.52406 -9.10003 -8.21043 -6.34955 -0.35954 0.22025 0.56287 1.00376 1.40291 1.42306 1.50751 2.12725 2.38937 2.72161 3.09664 3.12751 3.34197 3.58015 3.89831 4.04649 4.08117 4.15085 4.33547 4.36602 4.45500 4.46686 4.61154 4.64072 4.75962 4.78311 4.85183 5.07366 5.13336 5.19328 5.33303 5.36989 5.42606 5.59109 5.68406 5.73456 6.03463 6.06448 6.20278 6.25247 6.77604 6.85837 7.33819 8.87672 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035972 B = 0.003312 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.193309 B = 8451.650453 C = 8646.248642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.324 6.324 3 C 0.308 3.692 4 C -0.203 4.203 5 C 0.042 3.958 6 C -0.092 4.092 7 C -0.086 4.086 8 C -0.136 4.136 9 C -0.048 4.048 10 C 0.053 3.947 11 C -0.531 4.531 12 H 0.055 0.945 13 C 0.006 3.994 14 N -0.929 5.929 15 Si 0.965 3.035 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.267 1.267 19 C -0.138 4.138 20 C -0.094 4.094 21 C -0.206 4.206 22 C 0.142 3.858 23 N -0.559 5.559 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.120 0.880 27 H 0.145 0.855 28 H 0.155 0.845 29 H 0.123 0.877 30 H 0.007 0.993 31 H 0.004 0.996 32 H 0.266 0.734 33 H 0.118 0.882 34 H 0.142 0.858 35 H 0.163 0.837 36 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.965 -1.139 -1.493 23.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.231 6.231 3 C 0.130 3.870 4 C -0.224 4.224 5 C 0.035 3.965 6 C -0.092 4.092 7 C -0.104 4.104 8 C -0.154 4.154 9 C -0.048 4.048 10 C 0.016 3.984 11 C -0.568 4.568 12 H 0.073 0.927 13 C -0.193 4.193 14 N -0.569 5.569 15 Si 0.789 3.211 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.192 1.192 19 C -0.156 4.156 20 C -0.112 4.112 21 C -0.226 4.226 22 C -0.013 4.013 23 N -0.284 5.284 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.138 0.862 27 H 0.163 0.837 28 H 0.173 0.827 29 H 0.141 0.859 30 H 0.025 0.975 31 H 0.023 0.977 32 H 0.075 0.925 33 H 0.136 0.864 34 H 0.160 0.840 35 H 0.180 0.820 36 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -23.608 -1.494 -1.539 23.705 hybrid contribution 1.702 0.040 0.645 1.821 sum -21.905 -1.454 -0.894 21.972 Atomic orbital electron populations 1.23048 0.75768 1.04547 1.02309 1.86221 1.24478 1.24518 1.87920 1.19801 0.89270 0.85192 0.92712 1.21189 0.92237 0.99369 1.09582 1.18982 0.91953 0.92901 0.92708 1.18622 0.90902 0.93891 1.05749 1.21394 0.93876 0.97424 0.97687 1.21109 0.93917 0.98277 1.02112 1.20583 0.96869 0.93972 0.93415 1.18155 0.87736 0.96074 0.96392 1.21334 0.92263 1.50867 0.92378 0.92690 1.25911 0.97070 0.94543 1.01742 1.70066 1.02922 1.50809 1.33111 0.85507 0.77120 0.79162 0.79332 1.19362 1.20579 1.19176 1.21065 0.94993 0.97147 1.02385 1.21364 0.92715 0.98870 0.98249 1.22356 0.94666 0.99874 1.05680 1.22867 0.92981 0.93905 0.91515 1.67314 1.41319 0.99306 1.20474 0.92434 0.92364 0.86160 0.83686 0.82720 0.85900 0.97457 0.97723 0.92510 0.86390 0.84028 0.81979 0.78798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.38 113.37 1.18 1.78 16 2 O -0.32 -7.57 10.47 -90.01 -0.94 -8.51 16 3 C 0.31 7.75 7.48 84.74 0.63 8.38 16 4 C -0.20 -5.18 9.43 22.69 0.21 -4.97 16 5 C 0.04 1.06 5.91 -19.86 -0.12 0.95 16 6 C -0.09 -2.69 5.88 -20.04 -0.12 -2.81 16 7 C -0.09 -2.53 9.45 22.48 0.21 -2.31 16 8 C -0.14 -5.01 9.68 22.24 0.22 -4.80 16 9 C -0.05 -2.07 5.07 -19.82 -0.10 -2.17 16 10 C 0.05 2.81 5.10 29.10 0.15 2.96 16 11 C -0.53 -29.99 9.09 25.60 0.23 -29.76 16 12 H 0.05 3.06 7.74 -2.91 -0.02 3.03 16 13 C 0.01 0.32 5.46 84.66 0.46 0.79 16 14 N -0.93 -55.57 13.29 21.45 0.28 -55.29 16 15 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 16 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 17 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 C -0.14 -5.27 9.68 22.24 0.22 -5.05 16 20 C -0.09 -2.96 9.45 22.48 0.21 -2.75 16 21 C -0.21 -4.12 9.49 22.58 0.21 -3.91 16 22 C 0.14 2.62 11.16 84.57 0.94 3.56 16 23 N -0.56 -12.89 9.20 -309.19 -2.84 -15.73 16 24 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 25 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 26 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.15 3.45 6.34 -2.91 -0.02 3.43 16 28 H 0.16 3.32 6.30 -2.91 -0.02 3.30 16 29 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 30 H 0.01 0.40 8.08 -2.39 -0.02 0.38 16 31 H 0.00 0.25 8.08 -2.39 -0.02 0.23 16 32 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 33 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 34 H 0.14 3.69 6.30 -2.91 -0.02 3.67 16 35 H 0.16 2.42 6.34 -2.91 -0.02 2.40 16 36 H 0.20 2.05 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -67.27 312.54 4.16 -63.12 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 1.09 Total: 10.62 kcal Atomic # 6 Polarization: -44.66 SS G_CDS: 4.55 Total: -40.11 kcal Atomic # 7 Polarization: -68.46 SS G_CDS: -2.56 Total: -71.02 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.94 Total: -8.51 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -67.27 4.16 -63.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240256732.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.560 kcal (2) G-P(sol) polarization free energy of solvation -67.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds