Wall clock time and date at job start Mon Mar 30 2020 00:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42905 * 109.47135 * 2 1 4 4 C 1.35616 * 117.00008 * 180.02562 * 3 2 1 5 5 N 1.32159 * 119.76533 * 359.97438 * 4 3 2 6 6 C 1.31965 * 121.77034 * 179.97438 * 5 4 3 7 7 C 1.38188 * 121.09760 * 0.02562 * 6 5 4 8 8 C 1.38559 * 119.40917 * 359.74623 * 7 6 5 9 9 C 1.39543 * 118.37470 * 0.51336 * 8 7 6 10 10 C 1.48340 * 120.56497 * 179.73710 * 9 8 7 11 11 C 1.39759 * 120.00411 * 129.71851 * 10 9 8 12 12 C 1.38381 * 120.37474 * 180.02562 * 11 10 9 13 13 C 1.37720 * 120.38271 * 0.26596 * 12 11 10 14 14 C 1.40761 * 119.99708 * 359.48871 * 13 12 11 15 15 C 1.41422 * 120.18808 * 180.27876 * 14 13 12 16 16 H 1.08002 * 119.99708 * 204.63860 * 15 14 13 17 17 C 1.39922 * 120.00206 * 24.63252 * 15 14 13 18 18 N 1.30831 * 120.00247 * 17.76535 * 17 15 14 19 19 Si 1.86801 * 120.00048 * 197.76306 * 17 15 14 20 20 H 1.48497 * 109.47325 * 60.00429 * 19 17 15 21 21 H 1.48510 * 109.46967 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47342 * 299.99999 * 19 17 15 23 23 C 1.38761 * 120.00029 * 309.75129 * 10 9 8 24 24 H 1.08995 * 109.47521 * 300.00096 * 1 2 3 25 25 H 1.09001 * 109.46978 * 60.00438 * 1 2 3 26 26 H 1.09005 * 109.47081 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47180 * 240.00413 * 2 1 3 28 28 H 1.08998 * 109.47465 * 120.00128 * 2 1 3 29 29 H 1.07995 * 119.44785 * 179.97438 * 6 5 4 30 30 H 1.08002 * 120.29661 * 180.02562 * 7 6 5 31 31 H 1.07998 * 120.81206 * 180.27771 * 8 7 6 32 32 H 1.07998 * 119.81476 * 0.05754 * 11 10 9 33 33 H 1.07999 * 119.81014 * 179.97438 * 12 11 10 34 34 H 1.08004 * 120.00065 * 179.71729 * 13 12 11 35 35 H 0.96997 * 120.00417 * 179.97438 * 18 17 15 36 36 H 1.07997 * 120.18638 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3508 1.5250 -0.0005 5 7 4.1515 0.4736 -0.0005 6 6 5.4651 0.6007 -0.0015 7 6 6.0616 1.8472 -0.0021 8 6 5.2665 2.9819 -0.0070 9 6 3.8805 2.8206 -0.0002 10 6 2.9835 4.0021 0.0009 11 6 1.9406 4.0886 -0.9255 12 6 1.0996 5.1875 -0.9317 13 6 1.2840 6.2109 -0.0287 14 6 2.3262 6.1378 0.9147 15 6 2.5156 7.1836 1.8476 16 1 3.4889 7.3459 2.2866 17 6 1.4420 8.0082 2.2018 18 7 0.2148 7.6239 1.9612 19 14 1.7610 9.6577 3.0182 20 1 2.5823 10.5055 2.1172 21 1 0.4671 10.3340 3.2900 22 1 2.4871 9.4454 4.2961 23 6 3.1803 5.0217 0.9212 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 6.0841 -0.2843 -0.0011 30 1 7.1379 1.9361 -0.0034 31 1 5.7087 3.9672 -0.0121 32 1 1.7898 3.2931 -1.6402 33 1 0.2968 5.2452 -1.6518 34 1 0.6268 7.0678 -0.0420 35 1 -0.5294 8.1953 2.2070 36 1 3.9852 4.9581 1.6384 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240493083.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:09 Heat of formation + Delta-G solvation = 6.155857 kcal Electronic energy + Delta-G solvation = -19544.817698 eV Core-core repulsion = 16572.545303 eV Total energy + Delta-G solvation = -2972.272395 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.28774 -37.68928 -37.30491 -33.91685 -32.38256 -31.84699 -30.17950 -29.82187 -27.90258 -25.29110 -23.94082 -23.05980 -21.98318 -20.53031 -20.23351 -18.17012 -17.30381 -16.32501 -15.96981 -15.48632 -15.12183 -14.57990 -14.21220 -13.79770 -13.65299 -13.17334 -13.11106 -12.73728 -12.41864 -12.33118 -12.11765 -11.71024 -11.60952 -11.30189 -11.13107 -10.98746 -10.72317 -10.55984 -10.45031 -9.87036 -9.55797 -9.37041 -9.25935 -9.10764 -8.21160 -7.45578 -7.09109 -6.72738 -4.33597 1.37344 1.60675 2.82847 2.98222 3.07799 3.10382 3.24002 3.39515 3.94978 4.12588 4.56329 4.65172 5.16705 5.17501 5.22742 5.33337 5.37143 5.47524 5.56785 5.69707 5.86010 5.99543 6.01546 6.18405 6.29267 6.34468 6.51695 6.56178 6.75734 6.92662 7.07283 7.24113 7.35129 7.53536 7.67093 7.88064 8.02780 8.08907 8.15847 8.28025 8.63710 8.90780 8.97112 10.22278 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.021703 B = 0.005144 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.829325 B = 5441.594905 C = 6254.615182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.066 3.934 3 O -0.286 6.286 4 C 0.323 3.677 5 N -0.545 5.545 6 C 0.115 3.885 7 C -0.211 4.211 8 C -0.044 4.044 9 C -0.078 4.078 10 C -0.033 4.033 11 C -0.199 4.199 12 C -0.109 4.109 13 C -0.155 4.155 14 C 0.107 3.893 15 C -0.467 4.467 16 H 0.076 0.924 17 C 0.077 3.923 18 N -0.796 5.796 19 Si 0.907 3.093 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.202 4.202 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.152 0.848 30 H 0.132 0.868 31 H 0.140 0.860 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.280 0.720 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.667 -9.658 -3.102 11.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.192 6.192 4 C 0.144 3.856 5 N -0.269 5.269 6 C -0.040 4.040 7 C -0.231 4.231 8 C -0.069 4.069 9 C -0.080 4.080 10 C -0.034 4.034 11 C -0.218 4.218 12 C -0.127 4.127 13 C -0.174 4.174 14 C 0.105 3.895 15 C -0.496 4.496 16 H 0.094 0.906 17 C -0.140 4.140 18 N -0.422 5.422 19 Si 0.731 3.269 20 H -0.189 1.189 21 H -0.204 1.204 22 H -0.191 1.191 23 C -0.221 4.221 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.169 0.831 30 H 0.150 0.850 31 H 0.158 0.842 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.136 0.864 35 H 0.091 0.909 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.797 -10.235 -3.055 11.336 hybrid contribution 0.481 1.240 0.473 1.412 sum 4.278 -8.995 -2.582 10.290 Atomic orbital electron populations 1.21792 0.93269 1.02198 1.03724 1.22523 0.94750 0.81987 1.01727 1.86435 1.16455 1.29116 1.87225 1.19895 0.84051 0.89172 0.92518 1.67234 1.06564 1.33194 1.19916 1.22222 0.89205 0.97058 0.95502 1.21845 1.00936 0.93315 1.07025 1.21581 0.91644 0.99494 0.94226 1.19191 0.93676 0.91745 1.03431 1.18001 0.95513 0.91979 0.97893 1.20297 0.99059 0.99638 1.02844 1.20608 0.98094 0.95100 0.98947 1.21406 1.01359 0.99025 0.95614 1.17496 0.90562 0.90656 0.90836 1.19489 0.96504 1.11653 1.21983 0.90566 1.25868 0.94475 0.99125 0.94564 1.69819 0.99358 1.35877 1.37144 0.86395 0.78547 0.81776 0.80137 1.18863 1.20388 1.19076 1.20982 1.04475 0.94944 1.01724 0.91468 0.91604 0.90831 0.92213 0.92171 0.83101 0.85027 0.84193 0.89404 0.89263 0.86407 0.90887 0.88932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 37.16 0.38 -1.51 16 2 C 0.07 0.97 6.03 37.16 0.22 1.19 16 3 O -0.29 -5.47 8.48 -18.55 -0.16 -5.63 16 4 C 0.32 6.18 7.41 -16.76 -0.12 6.06 16 5 N -0.55 -9.19 9.21 -13.06 -0.12 -9.31 16 6 C 0.12 1.60 11.17 -17.51 -0.20 1.41 16 7 C -0.21 -2.86 10.09 -39.48 -0.40 -3.26 16 8 C -0.04 -0.74 9.67 -38.98 -0.38 -1.11 16 9 C -0.08 -1.54 5.49 -104.61 -0.57 -2.12 16 10 C -0.03 -0.76 5.29 -104.98 -0.56 -1.32 16 11 C -0.20 -4.61 8.80 -38.96 -0.34 -4.95 16 12 C -0.11 -2.60 10.01 -39.72 -0.40 -3.00 16 13 C -0.15 -4.05 8.69 -38.82 -0.34 -4.38 16 14 C 0.11 2.86 5.57 -106.87 -0.60 2.26 16 15 C -0.47 -12.40 9.05 -37.74 -0.34 -12.74 16 16 H 0.08 1.94 7.91 -52.49 -0.41 1.52 16 17 C 0.08 1.94 5.14 -17.35 -0.09 1.85 16 18 N -0.80 -20.74 10.96 55.55 0.61 -20.13 16 19 Si 0.91 18.71 29.59 -169.99 -5.03 13.68 16 20 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 C -0.20 -4.98 9.27 -38.52 -0.36 -5.34 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.83 8.11 -51.93 -0.42 0.41 16 28 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 29 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 31 H 0.14 2.15 8.06 -52.49 -0.42 1.73 16 32 H 0.09 1.92 7.68 -52.49 -0.40 1.51 16 33 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 34 H 0.12 3.16 6.16 -52.48 -0.32 2.84 16 35 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 36 H 0.09 2.17 8.05 -52.49 -0.42 1.75 16 LS Contribution 312.48 15.07 4.71 4.71 Total: -1.00 -29.14 312.48 -8.57 -37.71 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -4.50 Total: 5.94 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: -4.08 Total: -26.96 kcal Atomic # 7 Polarization: -29.93 SS G_CDS: 0.49 Total: -29.44 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.16 Total: -5.63 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.14 -8.57 -37.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240493083.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.863 kcal (2) G-P(sol) polarization free energy of solvation -29.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds