Wall clock time and date at job start Mon Mar 30 2020 00:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42905 * 109.47135 * 2 1 4 4 C 1.35616 * 117.00008 * 180.02562 * 3 2 1 5 5 N 1.32159 * 119.76533 * 359.97438 * 4 3 2 6 6 C 1.31965 * 121.77034 * 179.97438 * 5 4 3 7 7 C 1.38188 * 121.09760 * 0.02562 * 6 5 4 8 8 C 1.38559 * 119.40917 * 359.74623 * 7 6 5 9 9 C 1.39543 * 118.37470 * 0.51336 * 8 7 6 10 10 C 1.48340 * 120.56497 * 179.73710 * 9 8 7 11 11 C 1.39759 * 120.00411 * 129.71851 * 10 9 8 12 12 C 1.38381 * 120.37474 * 180.02562 * 11 10 9 13 13 C 1.37720 * 120.38271 * 0.26596 * 12 11 10 14 14 C 1.40761 * 119.99708 * 359.48871 * 13 12 11 15 15 C 1.41422 * 120.18808 * 180.27876 * 14 13 12 16 16 H 1.08002 * 119.99708 * 204.63860 * 15 14 13 17 17 C 1.39922 * 120.00206 * 24.63252 * 15 14 13 18 18 N 1.30831 * 120.00247 * 17.76535 * 17 15 14 19 19 Si 1.86801 * 120.00048 * 197.76306 * 17 15 14 20 20 H 1.48497 * 109.47325 * 60.00429 * 19 17 15 21 21 H 1.48510 * 109.46967 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47342 * 299.99999 * 19 17 15 23 23 C 1.38761 * 120.00029 * 309.75129 * 10 9 8 24 24 H 1.08995 * 109.47521 * 300.00096 * 1 2 3 25 25 H 1.09001 * 109.46978 * 60.00438 * 1 2 3 26 26 H 1.09005 * 109.47081 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47180 * 240.00413 * 2 1 3 28 28 H 1.08998 * 109.47465 * 120.00128 * 2 1 3 29 29 H 1.07995 * 119.44785 * 179.97438 * 6 5 4 30 30 H 1.08002 * 120.29661 * 180.02562 * 7 6 5 31 31 H 1.07998 * 120.81206 * 180.27771 * 8 7 6 32 32 H 1.07998 * 119.81476 * 0.05754 * 11 10 9 33 33 H 1.07999 * 119.81014 * 179.97438 * 12 11 10 34 34 H 1.08004 * 120.00065 * 179.71729 * 13 12 11 35 35 H 0.96997 * 120.00417 * 179.97438 * 18 17 15 36 36 H 1.07997 * 120.18638 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3508 1.5250 -0.0005 5 7 4.1515 0.4736 -0.0005 6 6 5.4651 0.6007 -0.0015 7 6 6.0616 1.8472 -0.0021 8 6 5.2665 2.9819 -0.0070 9 6 3.8805 2.8206 -0.0002 10 6 2.9835 4.0021 0.0009 11 6 1.9406 4.0886 -0.9255 12 6 1.0996 5.1875 -0.9317 13 6 1.2840 6.2109 -0.0287 14 6 2.3262 6.1378 0.9147 15 6 2.5156 7.1836 1.8476 16 1 3.4889 7.3459 2.2866 17 6 1.4420 8.0082 2.2018 18 7 0.2148 7.6239 1.9612 19 14 1.7610 9.6577 3.0182 20 1 2.5823 10.5055 2.1172 21 1 0.4671 10.3340 3.2900 22 1 2.4871 9.4454 4.2961 23 6 3.1803 5.0217 0.9212 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 6.0841 -0.2843 -0.0011 30 1 7.1379 1.9361 -0.0034 31 1 5.7087 3.9672 -0.0121 32 1 1.7898 3.2931 -1.6402 33 1 0.2968 5.2452 -1.6518 34 1 0.6268 7.0678 -0.0420 35 1 -0.5294 8.1953 2.2070 36 1 3.9852 4.9581 1.6384 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240493083.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:09 Heat of formation + Delta-G solvation = -10.128052 kcal Electronic energy + Delta-G solvation = -19545.523821 eV Core-core repulsion = 16572.545303 eV Total energy + Delta-G solvation = -2972.978518 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.59389 -39.27236 -38.83317 -35.74361 -33.90422 -32.98963 -31.76010 -31.50331 -29.47710 -27.20393 -25.21605 -24.45313 -23.21359 -22.38833 -21.95143 -19.50058 -19.05339 -17.63421 -17.28744 -17.22415 -16.57989 -16.30882 -15.69303 -15.29336 -14.92519 -14.69976 -14.67095 -14.20996 -13.99258 -13.48945 -13.38250 -13.27779 -13.15162 -12.89610 -12.73016 -12.56739 -12.40052 -12.17577 -11.69396 -11.61717 -11.34551 -11.03361 -10.81126 -10.57623 -9.64617 -9.39722 -8.82640 -8.61347 -6.34076 0.04231 0.35417 1.00259 1.15754 1.38603 1.50120 1.55813 2.15463 2.21786 2.70858 2.89732 3.38178 3.70282 3.95706 4.04632 4.08510 4.13890 4.22244 4.39921 4.44104 4.49462 4.64584 4.72522 4.84022 4.93681 5.00968 5.05553 5.12992 5.21037 5.22401 5.33878 5.48525 5.59669 5.67369 5.99240 6.07092 6.16946 6.34566 6.41197 6.67828 6.89885 6.94257 7.02370 8.35330 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.021703 B = 0.005144 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.829325 B = 5441.594905 C = 6254.615182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.062 3.938 3 O -0.316 6.316 4 C 0.308 3.692 5 N -0.552 5.552 6 C 0.125 3.875 7 C -0.196 4.196 8 C -0.045 4.045 9 C -0.123 4.123 10 C -0.022 4.022 11 C -0.205 4.205 12 C -0.110 4.110 13 C -0.184 4.184 14 C 0.079 3.921 15 C -0.502 4.502 16 H 0.076 0.924 17 C 0.035 3.965 18 N -0.829 5.829 19 Si 0.983 3.017 20 H -0.259 1.259 21 H -0.268 1.268 22 H -0.260 1.260 23 C -0.219 4.219 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.107 0.893 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.198 0.802 30 H 0.176 0.824 31 H 0.146 0.854 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.288 0.712 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.453 -11.049 -3.091 13.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.013 4.013 3 O -0.223 6.223 4 C 0.130 3.870 5 N -0.276 5.276 6 C -0.031 4.031 7 C -0.215 4.215 8 C -0.070 4.070 9 C -0.126 4.126 10 C -0.023 4.023 11 C -0.224 4.224 12 C -0.128 4.128 13 C -0.203 4.203 14 C 0.077 3.923 15 C -0.532 4.532 16 H 0.094 0.906 17 C -0.179 4.179 18 N -0.455 5.455 19 Si 0.803 3.197 20 H -0.184 1.184 21 H -0.192 1.192 22 H -0.184 1.184 23 C -0.239 4.239 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.126 0.874 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.215 0.785 30 H 0.194 0.806 31 H 0.163 0.837 32 H 0.118 0.882 33 H 0.128 0.872 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.575 -11.645 -3.054 13.267 hybrid contribution 0.044 1.444 0.418 1.504 sum 5.619 -10.201 -2.637 11.941 Atomic orbital electron populations 1.21825 0.91790 1.04113 1.02754 1.22760 0.95911 0.80452 1.02165 1.86389 1.16990 1.31554 1.87389 1.19944 0.84398 0.89389 0.93247 1.67352 1.07829 1.32176 1.20240 1.23125 0.88524 0.99021 0.92394 1.22283 1.02824 0.91880 1.04558 1.21812 0.90647 1.01181 0.93392 1.19162 0.94721 0.90963 1.07748 1.18280 0.95343 0.92437 0.96196 1.20508 0.99156 0.99546 1.03170 1.20861 0.98614 0.94648 0.98660 1.21341 1.02106 0.99701 0.97198 1.17868 0.91383 0.91644 0.91364 1.19770 0.97170 1.13132 1.23081 0.90553 1.26761 0.93793 1.02507 0.94846 1.69884 1.00315 1.37359 1.37902 0.85248 0.78784 0.76568 0.79059 1.18358 1.19231 1.18393 1.21100 1.04716 0.95376 1.02673 0.92806 0.92130 0.87444 0.91359 0.91952 0.78489 0.80614 0.83674 0.88182 0.87151 0.87914 0.90170 0.88610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 10.28 71.98 0.74 -2.80 16 2 C 0.06 1.78 6.03 71.98 0.43 2.22 16 3 O -0.32 -12.15 8.48 -89.28 -0.76 -12.91 16 4 C 0.31 11.61 7.41 85.06 0.63 12.24 16 5 N -0.55 -17.30 9.21 -308.18 -2.84 -20.14 16 6 C 0.12 2.94 11.17 84.66 0.95 3.89 16 7 C -0.20 -4.52 10.09 22.33 0.23 -4.30 16 8 C -0.05 -1.42 9.67 22.66 0.22 -1.20 16 9 C -0.12 -4.88 5.49 -19.85 -0.11 -4.98 16 10 C -0.02 -1.03 5.29 -20.10 -0.11 -1.14 16 11 C -0.20 -9.70 8.80 22.67 0.20 -9.50 16 12 C -0.11 -5.40 10.01 22.18 0.22 -5.18 16 13 C -0.18 -10.10 8.69 22.76 0.20 -9.90 16 14 C 0.08 4.46 5.57 -21.32 -0.12 4.34 16 15 C -0.50 -27.76 9.05 23.46 0.21 -27.54 16 16 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 17 C 0.04 1.83 5.14 85.25 0.44 2.27 16 18 N -0.83 -44.57 10.96 21.82 0.24 -44.33 16 19 Si 0.98 38.82 29.59 68.60 2.03 40.85 16 20 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 21 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 22 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 23 C -0.22 -11.26 9.27 22.96 0.21 -11.05 16 24 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 27 H 0.07 1.81 8.11 -2.39 -0.02 1.79 16 28 H 0.06 1.72 8.11 -2.39 -0.02 1.70 16 29 H 0.20 2.79 8.06 -2.91 -0.02 2.77 16 30 H 0.18 2.53 8.06 -2.91 -0.02 2.50 16 31 H 0.15 4.30 8.06 -2.91 -0.02 4.28 16 32 H 0.10 4.43 7.68 -2.91 -0.02 4.41 16 33 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 34 H 0.10 5.84 6.16 -2.91 -0.02 5.82 16 35 H 0.29 13.99 8.30 -92.71 -0.77 13.22 16 36 H 0.10 4.69 8.05 -2.91 -0.02 4.66 16 Total: -1.00 -66.43 312.48 4.09 -62.34 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: 1.07 Total: 26.85 kcal Atomic # 6 Polarization: -57.00 SS G_CDS: 4.34 Total: -52.66 kcal Atomic # 7 Polarization: -61.87 SS G_CDS: -2.60 Total: -64.47 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -0.76 Total: -12.91 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -66.43 4.09 -62.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240493083.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.212 kcal (2) G-P(sol) polarization free energy of solvation -66.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds