Wall clock time and date at job start Mon Mar 30 2020 00:46:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 O 1.42905 * 109.47517 * 2 1
4 4 C 1.35537 * 117.00416 * 179.97438 * 3 2 1
5 5 N 1.32150 * 119.79452 * 0.24899 * 4 3 2
6 6 C 1.31972 * 121.79874 * 180.29135 * 5 4 3
7 7 C 1.38310 * 121.17510 * 359.71758 * 6 5 4
8 8 C 1.38401 * 119.45916 * 0.02562 * 7 6 5
9 9 C 1.39918 * 118.34444 * 359.97438 * 8 7 6
10 10 C 1.47731 * 120.59215 * 179.97438 * 9 8 7
11 11 C 1.39251 * 120.34003 * 65.00491 * 10 9 8
12 12 C 1.38026 * 119.97654 * 180.02562 * 11 10 9
13 13 C 1.38966 * 120.68404 * 359.97438 * 12 11 10
14 14 C 1.36399 * 120.70461 * 359.97438 * 13 12 11
15 15 C 1.40763 * 119.99074 * 0.27587 * 14 13 12
16 16 C 1.40837 * 120.33662 * 179.72786 * 15 14 13
17 17 H 1.07999 * 120.00032 * 205.20419 * 16 15 14
18 18 C 1.40058 * 120.00303 * 25.20052 * 16 15 14
19 19 N 1.30791 * 119.99999 * 17.28424 * 18 16 15
20 20 Si 1.86799 * 120.00377 * 197.28836 * 18 16 15
21 21 H 1.48504 * 109.47084 * 89.99305 * 20 18 16
22 22 H 1.48497 * 109.47295 * 209.99834 * 20 18 16
23 23 H 1.48504 * 109.47039 * 330.00145 * 20 18 16
24 24 H 1.08995 * 109.46858 * 180.02562 * 1 2 3
25 25 H 1.08999 * 109.47073 * 300.00892 * 1 2 3
26 26 H 1.09004 * 109.46318 * 60.00223 * 1 2 3
27 27 H 1.08996 * 109.47496 * 239.99357 * 2 1 3
28 28 H 1.09006 * 109.46641 * 119.99345 * 2 1 3
29 29 H 1.07998 * 119.40853 * 179.74028 * 6 5 4
30 30 H 1.08005 * 120.26702 * 180.02562 * 7 6 5
31 31 H 1.07999 * 120.82660 * 180.02562 * 8 7 6
32 32 H 1.07992 * 120.01453 * 359.97161 * 11 10 9
33 33 H 1.08001 * 119.66307 * 180.02562 * 12 11 10
34 34 H 1.08003 * 119.64739 * 180.02562 * 13 12 11
35 35 H 1.08001 * 120.00902 * 180.02562 * 14 13 12
36 36 H 0.96999 * 120.00111 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0065 1.3473 0.0000
4 6 3.3502 1.5249 0.0005
5 7 4.1514 0.4740 -0.0039
6 6 5.4650 0.6010 0.0021
7 6 6.0637 1.8478 0.0076
8 6 5.2721 2.9830 0.0073
9 6 3.8820 2.8236 0.0009
10 6 2.9901 4.0013 0.0009
11 6 2.9749 4.8721 -1.0856
12 6 2.1391 5.9704 -1.0775
13 6 1.3068 6.2202 0.0070
14 6 1.2984 5.3850 1.0853
15 6 2.1430 4.2592 1.1099
16 6 2.1444 3.3952 2.2221
17 1 3.0193 2.8021 2.4441
18 6 1.0112 3.3049 3.0403
19 7 -0.1439 3.7403 2.6080
20 14 1.1495 2.5630 4.7490
21 1 1.4662 3.6328 5.7291
22 1 -0.1384 1.9211 5.1157
23 1 2.2309 1.5452 4.7607
24 1 -0.3633 -1.0276 0.0005
25 1 -0.3633 0.5140 0.8899
26 1 -0.3632 0.5138 -0.8901
27 1 1.8934 -0.5139 -0.8899
28 1 1.8933 -0.5138 0.8901
29 1 6.0834 -0.2844 0.0024
30 1 7.1402 1.9347 0.0121
31 1 5.7162 3.9675 0.0112
32 1 3.6176 4.6887 -1.9340
33 1 2.1311 6.6423 -1.9231
34 1 0.6591 7.0844 -0.0045
35 1 0.6467 5.5896 1.9219
36 1 -0.9286 3.6781 3.1748
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001240495089.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:46:11
Heat of formation + Delta-G solvation = 10.261771 kcal
Electronic energy + Delta-G solvation = -20478.242611 eV
Core-core repulsion = 17506.148262 eV
Total energy + Delta-G solvation = -2972.094349 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 269.116 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-39.89094 -37.43729 -37.11402 -33.67941 -32.44106 -31.49492 -30.03943 -29.49521
-27.95084 -25.26871 -23.64109 -22.68655 -21.62492 -20.79304 -19.83986 -17.76335
-17.25246 -16.10213 -15.68051 -15.48331 -15.07157 -14.44176 -13.97534 -13.61319
-13.22813 -12.98648 -12.92266 -12.59967 -12.34880 -12.04584 -11.74431 -11.68221
-11.44917 -11.21061 -11.10491 -10.90007 -10.63601 -10.46114 -10.16351 -9.74384
-9.58284 -9.18706 -9.07656 -8.94122 -7.75912 -7.38506 -7.18216 -6.75937
-4.32965 1.77031 1.96403 2.77851 3.01188 3.05069 3.09057 3.25049
3.81027 3.91472 4.45998 4.63938 4.91291 5.42494 5.52323 5.56664
5.58433 5.73885 5.78270 5.81061 5.89404 6.16734 6.22775 6.31322
6.34995 6.49603 6.55284 6.63543 6.77287 6.84463 7.05195 7.13528
7.23823 7.37859 7.58681 7.89689 8.00702 8.10384 8.13901 8.28244
8.53666 8.62222 8.87346 8.98092 10.15160
Molecular weight = 269.12amu
Principal moments of inertia in cm(-1)
A = 0.012523 B = 0.010007 C = 0.007714
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2235.288079 B = 2797.252459 C = 3628.960716
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.068 3.932
3 O -0.266 6.266
4 C 0.335 3.665
5 N -0.552 5.552
6 C 0.107 3.893
7 C -0.217 4.217
8 C -0.059 4.059
9 C -0.043 4.043
10 C -0.179 4.179
11 C -0.069 4.069
12 C -0.247 4.247
13 C -0.101 4.101
14 C -0.160 4.160
15 C 0.140 3.860
16 C -0.435 4.435
17 H 0.072 0.928
18 C 0.082 3.918
19 N -0.782 5.782
20 Si 0.898 3.102
21 H -0.267 1.267
22 H -0.276 1.276
23 H -0.263 1.263
24 H 0.067 0.933
25 H 0.069 0.931
26 H 0.061 0.939
27 H 0.053 0.947
28 H 0.056 0.944
29 H 0.146 0.854
30 H 0.125 0.875
31 H 0.132 0.868
32 H 0.086 0.914
33 H 0.086 0.914
34 H 0.085 0.915
35 H 0.118 0.882
36 H 0.280 0.720
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.396 -4.541 -2.160 6.679
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.008 4.008
3 O -0.171 6.171
4 C 0.155 3.845
5 N -0.276 5.276
6 C -0.047 4.047
7 C -0.238 4.238
8 C -0.084 4.084
9 C -0.046 4.046
10 C -0.182 4.182
11 C -0.088 4.088
12 C -0.267 4.267
13 C -0.119 4.119
14 C -0.180 4.180
15 C 0.137 3.863
16 C -0.464 4.464
17 H 0.090 0.910
18 C -0.137 4.137
19 N -0.406 5.406
20 Si 0.723 3.277
21 H -0.192 1.192
22 H -0.202 1.202
23 H -0.187 1.187
24 H 0.086 0.914
25 H 0.088 0.912
26 H 0.080 0.920
27 H 0.071 0.929
28 H 0.075 0.925
29 H 0.163 0.837
30 H 0.143 0.857
31 H 0.150 0.850
32 H 0.104 0.896
33 H 0.104 0.896
34 H 0.104 0.896
35 H 0.136 0.864
36 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 3.512 -5.185 -2.093 6.603
hybrid contribution 0.415 0.179 0.798 0.917
sum 3.927 -5.007 -1.294 6.493
Atomic orbital electron populations
1.21743 0.93581 1.01521 1.03848 1.22427 0.94665 0.82629 1.01047
1.86513 1.16111 1.28038 1.86440 1.20129 0.84084 0.89130 0.91143
1.67218 1.06415 1.33612 1.20389 1.22116 0.89361 0.96723 0.96533
1.21714 1.00418 0.93517 1.08151 1.21553 0.91988 0.98827 0.96055
1.18803 0.92744 0.91611 1.01419 1.18217 1.06448 0.96647 0.96843
1.20490 0.97889 0.94474 0.95930 1.20204 1.04959 1.01448 1.00050
1.20447 0.98175 0.98407 0.94920 1.21023 1.03045 0.95144 0.98739
1.17425 0.88391 0.90471 0.90035 1.19357 0.99281 1.20250 1.07477
0.91031 1.25858 0.94623 0.93950 0.99290 1.69818 0.99546 1.35268
1.35991 0.86458 0.78784 0.80056 0.82433 1.19157 1.20155 1.18668
0.91418 0.91152 0.91957 0.92863 0.92517 0.83716 0.85717 0.85040
0.89567 0.89584 0.89641 0.86444 0.90889
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.45 10.28 37.16 0.38 -2.07 16
2 C 0.07 1.27 6.03 37.16 0.22 1.49 16
3 O -0.27 -6.11 8.70 -18.31 -0.16 -6.27 16
4 C 0.33 7.44 6.80 -16.63 -0.11 7.32 16
5 N -0.55 -10.94 9.21 -12.95 -0.12 -11.06 16
6 C 0.11 1.78 11.17 -17.46 -0.20 1.59 16
7 C -0.22 -3.46 10.09 -39.49 -0.40 -3.85 16
8 C -0.06 -1.10 9.90 -38.89 -0.38 -1.49 16
9 C -0.04 -0.95 4.40 -104.60 -0.46 -1.41 16
10 C -0.18 -4.36 5.02 -104.23 -0.52 -4.89 16
11 C -0.07 -1.59 9.74 -39.28 -0.38 -1.97 16
12 C -0.25 -5.59 10.03 -39.39 -0.40 -5.98 16
13 C -0.10 -2.37 9.96 -39.97 -0.40 -2.77 16
14 C -0.16 -4.13 8.63 -39.29 -0.34 -4.46 16
15 C 0.14 3.66 5.42 -106.55 -0.58 3.08 16
16 C -0.43 -11.36 7.38 -37.92 -0.28 -11.64 16
17 H 0.07 1.91 7.11 -52.49 -0.37 1.54 16
18 C 0.08 2.02 5.15 -17.31 -0.09 1.93 16
19 N -0.78 -19.67 10.97 55.55 0.61 -19.06 16
20 Si 0.90 18.82 29.59 -169.99 -5.03 13.79 16
21 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16
22 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16
23 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16
24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16
25 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16
26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
27 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16
28 H 0.06 1.04 8.11 -51.93 -0.42 0.62 16
29 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16
30 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16
31 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16
32 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16
33 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16
34 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16
35 H 0.12 3.09 6.18 -52.49 -0.32 2.77 16
36 H 0.28 6.43 8.29 -40.82 -0.34 6.10 16
LS Contribution 310.34 15.07 4.68 4.68
Total: -1.00 -28.35 310.34 -8.43 -36.79
By element:
Atomic # 1 Polarization: 10.75 SS G_CDS: -4.48 Total: 6.27 kcal
Atomic # 6 Polarization: -21.20 SS G_CDS: -3.93 Total: -25.13 kcal
Atomic # 7 Polarization: -30.61 SS G_CDS: 0.49 Total: -30.12 kcal
Atomic # 8 Polarization: -6.11 SS G_CDS: -0.16 Total: -6.27 kcal
Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal
Total LS contribution 4.68 Total: 4.68 kcal
Total: -28.35 -8.43 -36.79 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001240495089.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.048 kcal
(2) G-P(sol) polarization free energy of solvation -28.355 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.693 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.786 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.262 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds