Wall clock time and date at job start Mon Mar 30 2020 00:46:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 O 1.42905 * 109.47517 * 2 1
4 4 C 1.35537 * 117.00416 * 179.97438 * 3 2 1
5 5 N 1.32150 * 119.79452 * 0.24899 * 4 3 2
6 6 C 1.31972 * 121.79874 * 180.29135 * 5 4 3
7 7 C 1.38310 * 121.17510 * 359.71758 * 6 5 4
8 8 C 1.38401 * 119.45916 * 0.02562 * 7 6 5
9 9 C 1.39918 * 118.34444 * 359.97438 * 8 7 6
10 10 C 1.47731 * 120.59215 * 179.97438 * 9 8 7
11 11 C 1.39251 * 120.34003 * 65.00491 * 10 9 8
12 12 C 1.38026 * 119.97654 * 180.02562 * 11 10 9
13 13 C 1.38966 * 120.68404 * 359.97438 * 12 11 10
14 14 C 1.36399 * 120.70461 * 359.97438 * 13 12 11
15 15 C 1.40763 * 119.99074 * 0.27587 * 14 13 12
16 16 C 1.40837 * 120.33662 * 179.72786 * 15 14 13
17 17 H 1.07999 * 120.00032 * 205.20419 * 16 15 14
18 18 C 1.40058 * 120.00303 * 25.20052 * 16 15 14
19 19 N 1.30791 * 119.99999 * 17.28424 * 18 16 15
20 20 Si 1.86799 * 120.00377 * 197.28836 * 18 16 15
21 21 H 1.48504 * 109.47084 * 89.99305 * 20 18 16
22 22 H 1.48497 * 109.47295 * 209.99834 * 20 18 16
23 23 H 1.48504 * 109.47039 * 330.00145 * 20 18 16
24 24 H 1.08995 * 109.46858 * 180.02562 * 1 2 3
25 25 H 1.08999 * 109.47073 * 300.00892 * 1 2 3
26 26 H 1.09004 * 109.46318 * 60.00223 * 1 2 3
27 27 H 1.08996 * 109.47496 * 239.99357 * 2 1 3
28 28 H 1.09006 * 109.46641 * 119.99345 * 2 1 3
29 29 H 1.07998 * 119.40853 * 179.74028 * 6 5 4
30 30 H 1.08005 * 120.26702 * 180.02562 * 7 6 5
31 31 H 1.07999 * 120.82660 * 180.02562 * 8 7 6
32 32 H 1.07992 * 120.01453 * 359.97161 * 11 10 9
33 33 H 1.08001 * 119.66307 * 180.02562 * 12 11 10
34 34 H 1.08003 * 119.64739 * 180.02562 * 13 12 11
35 35 H 1.08001 * 120.00902 * 180.02562 * 14 13 12
36 36 H 0.96999 * 120.00111 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0065 1.3473 0.0000
4 6 3.3502 1.5249 0.0005
5 7 4.1514 0.4740 -0.0039
6 6 5.4650 0.6010 0.0021
7 6 6.0637 1.8478 0.0076
8 6 5.2721 2.9830 0.0073
9 6 3.8820 2.8236 0.0009
10 6 2.9901 4.0013 0.0009
11 6 2.9749 4.8721 -1.0856
12 6 2.1391 5.9704 -1.0775
13 6 1.3068 6.2202 0.0070
14 6 1.2984 5.3850 1.0853
15 6 2.1430 4.2592 1.1099
16 6 2.1444 3.3952 2.2221
17 1 3.0193 2.8021 2.4441
18 6 1.0112 3.3049 3.0403
19 7 -0.1439 3.7403 2.6080
20 14 1.1495 2.5630 4.7490
21 1 1.4662 3.6328 5.7291
22 1 -0.1384 1.9211 5.1157
23 1 2.2309 1.5452 4.7607
24 1 -0.3633 -1.0276 0.0005
25 1 -0.3633 0.5140 0.8899
26 1 -0.3632 0.5138 -0.8901
27 1 1.8934 -0.5139 -0.8899
28 1 1.8933 -0.5138 0.8901
29 1 6.0834 -0.2844 0.0024
30 1 7.1402 1.9347 0.0121
31 1 5.7162 3.9675 0.0112
32 1 3.6176 4.6887 -1.9340
33 1 2.1311 6.6423 -1.9231
34 1 0.6591 7.0844 -0.0045
35 1 0.6467 5.5896 1.9219
36 1 -0.9286 3.6781 3.1748
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001240495089.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:46:11
Heat of formation + Delta-G solvation = -5.384850 kcal
Electronic energy + Delta-G solvation = -20478.921100 eV
Core-core repulsion = 17506.148262 eV
Total energy + Delta-G solvation = -2972.772838 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 269.116 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-41.38961 -39.20575 -38.64855 -35.52974 -34.02492 -32.89702 -31.63480 -31.27985
-29.57979 -27.12051 -25.09633 -24.22717 -23.11087 -22.61108 -21.54829 -19.29636
-19.08886 -17.64441 -17.30656 -17.02517 -16.72964 -15.98496 -15.60344 -15.30599
-14.72856 -14.55361 -14.51778 -14.35361 -13.85290 -13.47208 -13.34269 -13.16775
-13.06232 -12.96066 -12.82028 -12.47090 -12.27883 -12.19828 -11.63339 -11.51722
-11.35413 -11.02945 -10.59503 -10.43460 -9.38518 -9.26111 -8.89041 -8.57641
-6.24428 0.29891 0.52484 1.01522 1.18504 1.31963 1.42235 1.50350
2.17273 2.36353 2.77434 3.01114 3.54356 3.76531 4.09999 4.14422
4.19166 4.27050 4.37539 4.45045 4.48689 4.52196 4.63494 4.82386
4.85733 4.94786 5.07442 5.15115 5.17525 5.27597 5.35687 5.39810
5.55587 5.73645 5.74196 6.07265 6.13536 6.23835 6.42458 6.62581
6.73417 6.98393 7.06274 7.13029 8.34198
Molecular weight = 269.12amu
Principal moments of inertia in cm(-1)
A = 0.012523 B = 0.010007 C = 0.007714
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2235.288079 B = 2797.252459 C = 3628.960716
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C 0.066 3.934
3 O -0.301 6.301
4 C 0.311 3.689
5 N -0.562 5.562
6 C 0.109 3.891
7 C -0.201 4.201
8 C -0.059 4.059
9 C -0.085 4.085
10 C -0.180 4.180
11 C -0.081 4.081
12 C -0.245 4.245
13 C -0.108 4.108
14 C -0.188 4.188
15 C 0.111 3.889
16 C -0.455 4.455
17 H 0.054 0.946
18 C 0.046 3.954
19 N -0.811 5.811
20 Si 0.960 3.040
21 H -0.259 1.259
22 H -0.264 1.264
23 H -0.270 1.270
24 H 0.107 0.893
25 H 0.043 0.957
26 H 0.057 0.943
27 H 0.066 0.934
28 H 0.052 0.948
29 H 0.190 0.810
30 H 0.172 0.828
31 H 0.146 0.854
32 H 0.110 0.890
33 H 0.116 0.884
34 H 0.107 0.893
35 H 0.101 0.899
36 H 0.286 0.714
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.299 -5.531 -2.671 8.798
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.010 4.010
3 O -0.208 6.208
4 C 0.132 3.868
5 N -0.287 5.287
6 C -0.046 4.046
7 C -0.221 4.221
8 C -0.084 4.084
9 C -0.087 4.087
10 C -0.182 4.182
11 C -0.099 4.099
12 C -0.264 4.264
13 C -0.126 4.126
14 C -0.208 4.208
15 C 0.108 3.892
16 C -0.484 4.484
17 H 0.073 0.927
18 C -0.170 4.170
19 N -0.436 5.436
20 Si 0.781 3.219
21 H -0.183 1.183
22 H -0.188 1.188
23 H -0.194 1.194
24 H 0.125 0.875
25 H 0.062 0.938
26 H 0.076 0.924
27 H 0.084 0.916
28 H 0.070 0.930
29 H 0.207 0.793
30 H 0.190 0.810
31 H 0.164 0.836
32 H 0.128 0.872
33 H 0.134 0.866
34 H 0.125 0.875
35 H 0.119 0.881
36 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 5.408 -6.166 -2.613 8.608
hybrid contribution -0.016 0.448 0.821 0.936
sum 5.392 -5.718 -1.792 8.061
Atomic orbital electron populations
1.21741 0.92313 1.03559 1.02231 1.22609 0.95659 0.81367 1.01335
1.86461 1.17209 1.30197 1.86909 1.20240 0.84113 0.89768 0.92633
1.67278 1.07839 1.32902 1.20713 1.22989 0.88587 0.98888 0.94099
1.22175 1.02474 0.92074 1.05398 1.21845 0.90813 1.00748 0.95012
1.18937 0.94109 0.91002 1.04699 1.18567 1.05863 0.97385 0.96346
1.20833 0.98339 0.94404 0.96296 1.20584 1.03825 1.01629 1.00388
1.20720 0.98605 0.98710 0.94586 1.21020 1.04012 0.96302 0.99436
1.17747 0.89498 0.90861 0.91060 1.19285 0.99322 1.21044 1.08789
0.92733 1.26506 0.93989 0.94249 1.02263 1.69859 1.00092 1.36416
1.37231 0.85543 0.78828 0.79217 0.78268 1.18317 1.18843 1.19414
0.87495 0.93791 0.92395 0.91581 0.92957 0.79319 0.81049 0.83629
0.87238 0.86570 0.87472 0.88075 0.90281
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.68 10.28 71.98 0.74 -3.94 16
2 C 0.07 2.47 6.03 71.98 0.43 2.91 16
3 O -0.30 -14.32 8.70 -88.41 -0.77 -15.09 16
4 C 0.31 13.92 6.80 85.16 0.58 14.49 16
5 N -0.56 -21.61 9.21 -307.89 -2.84 -24.44 16
6 C 0.11 3.25 11.17 84.69 0.95 4.20 16
7 C -0.20 -5.63 10.09 22.33 0.23 -5.40 16
8 C -0.06 -2.09 9.90 22.72 0.22 -1.86 16
9 C -0.08 -3.76 4.40 -19.85 -0.09 -3.85 16
10 C -0.18 -8.90 5.02 -19.61 -0.10 -8.99 16
11 C -0.08 -3.65 9.74 22.46 0.22 -3.43 16
12 C -0.25 -10.85 10.03 22.39 0.22 -10.63 16
13 C -0.11 -5.11 9.96 22.01 0.22 -4.89 16
14 C -0.19 -10.07 8.63 22.46 0.19 -9.88 16
15 C 0.11 6.04 5.42 -21.11 -0.11 5.92 16
16 C -0.46 -24.87 7.38 23.35 0.17 -24.69 16
17 H 0.05 3.06 7.11 -2.91 -0.02 3.04 16
18 C 0.05 2.36 5.15 85.29 0.44 2.80 16
19 N -0.81 -42.51 10.97 21.85 0.24 -42.27 16
20 Si 0.96 39.63 29.59 68.60 2.03 41.66 16
21 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16
22 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16
23 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16
24 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16
25 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16
26 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16
27 H 0.07 2.25 8.10 -2.39 -0.02 2.23 16
28 H 0.05 1.96 8.11 -2.38 -0.02 1.94 16
29 H 0.19 3.85 8.06 -2.91 -0.02 3.83 16
30 H 0.17 3.20 8.06 -2.91 -0.02 3.17 16
31 H 0.15 4.59 8.06 -2.91 -0.02 4.57 16
32 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16
33 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16
34 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16
35 H 0.10 5.61 6.18 -2.91 -0.02 5.60 16
36 H 0.29 13.63 8.29 -92.71 -0.77 12.86 16
Total: -1.00 -64.63 310.34 4.06 -60.57
By element:
Atomic # 1 Polarization: 25.74 SS G_CDS: 1.08 Total: 26.82 kcal
Atomic # 6 Polarization: -51.57 SS G_CDS: 4.32 Total: -47.25 kcal
Atomic # 7 Polarization: -64.11 SS G_CDS: -2.60 Total: -66.71 kcal
Atomic # 8 Polarization: -14.32 SS G_CDS: -0.77 Total: -15.09 kcal
Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal
Total: -64.63 4.06 -60.57 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001240495089.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.183 kcal
(2) G-P(sol) polarization free energy of solvation -64.625 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.442 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.057 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.568 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.385 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds