Wall clock time and date at job start Mon Mar 30 2020 00:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.47517 * 2 1 4 4 C 1.35537 * 117.00416 * 179.97438 * 3 2 1 5 5 N 1.32150 * 119.79452 * 0.24899 * 4 3 2 6 6 C 1.31972 * 121.79874 * 180.29135 * 5 4 3 7 7 C 1.38310 * 121.17510 * 359.71758 * 6 5 4 8 8 C 1.38401 * 119.45916 * 0.02562 * 7 6 5 9 9 C 1.39918 * 118.34444 * 359.97438 * 8 7 6 10 10 C 1.47731 * 120.59215 * 179.97438 * 9 8 7 11 11 C 1.39251 * 120.34003 * 65.00491 * 10 9 8 12 12 C 1.38026 * 119.97654 * 180.02562 * 11 10 9 13 13 C 1.38966 * 120.68404 * 359.97438 * 12 11 10 14 14 C 1.36399 * 120.70461 * 359.97438 * 13 12 11 15 15 C 1.40763 * 119.99074 * 0.27587 * 14 13 12 16 16 C 1.40837 * 120.33662 * 179.72786 * 15 14 13 17 17 H 1.07999 * 120.00032 * 205.20419 * 16 15 14 18 18 C 1.40058 * 120.00303 * 25.20052 * 16 15 14 19 19 N 1.30791 * 119.99999 * 17.28424 * 18 16 15 20 20 Si 1.86799 * 120.00377 * 197.28836 * 18 16 15 21 21 H 1.48504 * 109.47084 * 89.99305 * 20 18 16 22 22 H 1.48497 * 109.47295 * 209.99834 * 20 18 16 23 23 H 1.48504 * 109.47039 * 330.00145 * 20 18 16 24 24 H 1.08995 * 109.46858 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47073 * 300.00892 * 1 2 3 26 26 H 1.09004 * 109.46318 * 60.00223 * 1 2 3 27 27 H 1.08996 * 109.47496 * 239.99357 * 2 1 3 28 28 H 1.09006 * 109.46641 * 119.99345 * 2 1 3 29 29 H 1.07998 * 119.40853 * 179.74028 * 6 5 4 30 30 H 1.08005 * 120.26702 * 180.02562 * 7 6 5 31 31 H 1.07999 * 120.82660 * 180.02562 * 8 7 6 32 32 H 1.07992 * 120.01453 * 359.97161 * 11 10 9 33 33 H 1.08001 * 119.66307 * 180.02562 * 12 11 10 34 34 H 1.08003 * 119.64739 * 180.02562 * 13 12 11 35 35 H 1.08001 * 120.00902 * 180.02562 * 14 13 12 36 36 H 0.96999 * 120.00111 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3473 0.0000 4 6 3.3502 1.5249 0.0005 5 7 4.1514 0.4740 -0.0039 6 6 5.4650 0.6010 0.0021 7 6 6.0637 1.8478 0.0076 8 6 5.2721 2.9830 0.0073 9 6 3.8820 2.8236 0.0009 10 6 2.9901 4.0013 0.0009 11 6 2.9749 4.8721 -1.0856 12 6 2.1391 5.9704 -1.0775 13 6 1.3068 6.2202 0.0070 14 6 1.2984 5.3850 1.0853 15 6 2.1430 4.2592 1.1099 16 6 2.1444 3.3952 2.2221 17 1 3.0193 2.8021 2.4441 18 6 1.0112 3.3049 3.0403 19 7 -0.1439 3.7403 2.6080 20 14 1.1495 2.5630 4.7490 21 1 1.4662 3.6328 5.7291 22 1 -0.1384 1.9211 5.1157 23 1 2.2309 1.5452 4.7607 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 6.0834 -0.2844 0.0024 30 1 7.1402 1.9347 0.0121 31 1 5.7162 3.9675 0.0112 32 1 3.6176 4.6887 -1.9340 33 1 2.1311 6.6423 -1.9231 34 1 0.6591 7.0844 -0.0045 35 1 0.6467 5.5896 1.9219 36 1 -0.9286 3.6781 3.1748 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240495089.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:11 Heat of formation + Delta-G solvation = -5.384850 kcal Electronic energy + Delta-G solvation = -20478.921100 eV Core-core repulsion = 17506.148262 eV Total energy + Delta-G solvation = -2972.772838 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.38961 -39.20575 -38.64855 -35.52974 -34.02492 -32.89702 -31.63480 -31.27985 -29.57979 -27.12051 -25.09633 -24.22717 -23.11087 -22.61108 -21.54829 -19.29636 -19.08886 -17.64441 -17.30656 -17.02517 -16.72964 -15.98496 -15.60344 -15.30599 -14.72856 -14.55361 -14.51778 -14.35361 -13.85290 -13.47208 -13.34269 -13.16775 -13.06232 -12.96066 -12.82028 -12.47090 -12.27883 -12.19828 -11.63339 -11.51722 -11.35413 -11.02945 -10.59503 -10.43460 -9.38518 -9.26111 -8.89041 -8.57641 -6.24428 0.29891 0.52484 1.01522 1.18504 1.31963 1.42235 1.50350 2.17273 2.36353 2.77434 3.01114 3.54356 3.76531 4.09999 4.14422 4.19166 4.27050 4.37539 4.45045 4.48689 4.52196 4.63494 4.82386 4.85733 4.94786 5.07442 5.15115 5.17525 5.27597 5.35687 5.39810 5.55587 5.73645 5.74196 6.07265 6.13536 6.23835 6.42458 6.62581 6.73417 6.98393 7.06274 7.13029 8.34198 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.012523 B = 0.010007 C = 0.007714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.288079 B = 2797.252459 C = 3628.960716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.066 3.934 3 O -0.301 6.301 4 C 0.311 3.689 5 N -0.562 5.562 6 C 0.109 3.891 7 C -0.201 4.201 8 C -0.059 4.059 9 C -0.085 4.085 10 C -0.180 4.180 11 C -0.081 4.081 12 C -0.245 4.245 13 C -0.108 4.108 14 C -0.188 4.188 15 C 0.111 3.889 16 C -0.455 4.455 17 H 0.054 0.946 18 C 0.046 3.954 19 N -0.811 5.811 20 Si 0.960 3.040 21 H -0.259 1.259 22 H -0.264 1.264 23 H -0.270 1.270 24 H 0.107 0.893 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.190 0.810 30 H 0.172 0.828 31 H 0.146 0.854 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.299 -5.531 -2.671 8.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.010 4.010 3 O -0.208 6.208 4 C 0.132 3.868 5 N -0.287 5.287 6 C -0.046 4.046 7 C -0.221 4.221 8 C -0.084 4.084 9 C -0.087 4.087 10 C -0.182 4.182 11 C -0.099 4.099 12 C -0.264 4.264 13 C -0.126 4.126 14 C -0.208 4.208 15 C 0.108 3.892 16 C -0.484 4.484 17 H 0.073 0.927 18 C -0.170 4.170 19 N -0.436 5.436 20 Si 0.781 3.219 21 H -0.183 1.183 22 H -0.188 1.188 23 H -0.194 1.194 24 H 0.125 0.875 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.207 0.793 30 H 0.190 0.810 31 H 0.164 0.836 32 H 0.128 0.872 33 H 0.134 0.866 34 H 0.125 0.875 35 H 0.119 0.881 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.408 -6.166 -2.613 8.608 hybrid contribution -0.016 0.448 0.821 0.936 sum 5.392 -5.718 -1.792 8.061 Atomic orbital electron populations 1.21741 0.92313 1.03559 1.02231 1.22609 0.95659 0.81367 1.01335 1.86461 1.17209 1.30197 1.86909 1.20240 0.84113 0.89768 0.92633 1.67278 1.07839 1.32902 1.20713 1.22989 0.88587 0.98888 0.94099 1.22175 1.02474 0.92074 1.05398 1.21845 0.90813 1.00748 0.95012 1.18937 0.94109 0.91002 1.04699 1.18567 1.05863 0.97385 0.96346 1.20833 0.98339 0.94404 0.96296 1.20584 1.03825 1.01629 1.00388 1.20720 0.98605 0.98710 0.94586 1.21020 1.04012 0.96302 0.99436 1.17747 0.89498 0.90861 0.91060 1.19285 0.99322 1.21044 1.08789 0.92733 1.26506 0.93989 0.94249 1.02263 1.69859 1.00092 1.36416 1.37231 0.85543 0.78828 0.79217 0.78268 1.18317 1.18843 1.19414 0.87495 0.93791 0.92395 0.91581 0.92957 0.79319 0.81049 0.83629 0.87238 0.86570 0.87472 0.88075 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 10.28 71.98 0.74 -3.94 16 2 C 0.07 2.47 6.03 71.98 0.43 2.91 16 3 O -0.30 -14.32 8.70 -88.41 -0.77 -15.09 16 4 C 0.31 13.92 6.80 85.16 0.58 14.49 16 5 N -0.56 -21.61 9.21 -307.89 -2.84 -24.44 16 6 C 0.11 3.25 11.17 84.69 0.95 4.20 16 7 C -0.20 -5.63 10.09 22.33 0.23 -5.40 16 8 C -0.06 -2.09 9.90 22.72 0.22 -1.86 16 9 C -0.08 -3.76 4.40 -19.85 -0.09 -3.85 16 10 C -0.18 -8.90 5.02 -19.61 -0.10 -8.99 16 11 C -0.08 -3.65 9.74 22.46 0.22 -3.43 16 12 C -0.25 -10.85 10.03 22.39 0.22 -10.63 16 13 C -0.11 -5.11 9.96 22.01 0.22 -4.89 16 14 C -0.19 -10.07 8.63 22.46 0.19 -9.88 16 15 C 0.11 6.04 5.42 -21.11 -0.11 5.92 16 16 C -0.46 -24.87 7.38 23.35 0.17 -24.69 16 17 H 0.05 3.06 7.11 -2.91 -0.02 3.04 16 18 C 0.05 2.36 5.15 85.29 0.44 2.80 16 19 N -0.81 -42.51 10.97 21.85 0.24 -42.27 16 20 Si 0.96 39.63 29.59 68.60 2.03 41.66 16 21 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 22 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 24 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 25 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.07 2.25 8.10 -2.39 -0.02 2.23 16 28 H 0.05 1.96 8.11 -2.38 -0.02 1.94 16 29 H 0.19 3.85 8.06 -2.91 -0.02 3.83 16 30 H 0.17 3.20 8.06 -2.91 -0.02 3.17 16 31 H 0.15 4.59 8.06 -2.91 -0.02 4.57 16 32 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 33 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 34 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 35 H 0.10 5.61 6.18 -2.91 -0.02 5.60 16 36 H 0.29 13.63 8.29 -92.71 -0.77 12.86 16 Total: -1.00 -64.63 310.34 4.06 -60.57 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 1.08 Total: 26.82 kcal Atomic # 6 Polarization: -51.57 SS G_CDS: 4.32 Total: -47.25 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: -2.60 Total: -66.71 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.77 Total: -15.09 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Total: -64.63 4.06 -60.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240495089.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.183 kcal (2) G-P(sol) polarization free energy of solvation -64.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds