Wall clock time and date at job start Mon Mar 30 2020 01:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30753 * 1 3 3 Si 1.86798 * 120.00285 * 2 1 4 4 H 1.48498 * 109.47440 * 240.00391 * 3 2 1 5 5 H 1.48508 * 109.47221 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46975 * 119.99924 * 3 2 1 7 7 C 1.40011 * 119.99595 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99765 * 179.97438 * 7 2 1 9 9 C 1.41346 * 120.00227 * 359.97438 * 7 2 1 10 10 C 1.40679 * 119.76753 * 179.97438 * 9 7 2 11 11 C 1.38295 * 119.19865 * 179.97438 * 10 9 7 12 12 C 1.38680 * 118.69282 * 359.75276 * 11 10 9 13 13 C 1.39932 * 119.46781 * 0.51385 * 12 11 10 14 14 C 1.48261 * 119.61686 * 179.75069 * 13 12 11 15 15 C 1.40952 * 126.24650 * 4.75193 * 14 13 12 16 16 N 1.30621 * 108.06535 * 180.26552 * 15 14 13 17 17 N 1.40007 * 108.56289 * 359.58460 * 16 15 14 18 18 C 1.46504 * 125.86595 * 180.17193 * 17 16 15 19 19 C 1.52996 * 109.47431 * 305.29193 * 18 17 16 20 20 C 1.52999 * 117.49835 * 243.74616 * 19 18 17 21 21 C 1.52993 * 117.50040 * 175.08888 * 19 18 17 22 22 C 1.34671 * 108.26432 * 0.42367 * 17 16 15 23 23 N 1.32254 * 120.77502 * 359.47236 * 13 12 11 24 24 H 0.97002 * 119.99660 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.40434 * 0.02562 * 10 9 7 26 26 H 1.07998 * 120.65511 * 180.02562 * 11 10 9 27 27 H 1.08002 * 120.26964 * 180.24185 * 12 11 10 28 28 H 1.08002 * 125.96525 * 359.97438 * 15 14 13 29 29 H 1.09003 * 109.46577 * 65.29180 * 18 17 16 30 30 H 1.09001 * 109.46495 * 185.28899 * 18 17 16 31 31 H 1.09004 * 115.54806 * 29.41068 * 19 18 17 32 32 H 1.09003 * 117.50055 * 0.02562 * 20 19 18 33 33 H 1.08999 * 117.49712 * 145.01777 * 20 19 18 34 34 H 1.09002 * 117.50127 * 214.98314 * 21 19 18 35 35 H 1.09005 * 117.49626 * 359.97142 * 21 19 18 36 36 H 1.08004 * 126.19633 * 179.77889 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.0953 1.6964 -1.2125 5 1 1.2766 2.7465 0.0006 6 1 3.0953 1.6963 1.2125 7 6 2.0075 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3007 -2.4367 -0.0005 10 6 2.0090 -3.6521 -0.0016 11 6 1.3057 -4.8429 -0.0011 12 6 -0.0804 -4.7974 0.0058 13 6 -0.7285 -3.5573 0.0010 14 6 -2.2102 -3.5049 0.0027 15 6 -3.0830 -4.6071 0.1030 16 7 -4.3089 -4.1580 0.0631 17 7 -4.2691 -2.7634 -0.0535 18 6 -5.4314 -1.8746 -0.1265 19 6 -6.3447 -2.3221 -1.2696 20 6 -6.5409 -1.3535 -2.4375 21 6 -7.6765 -1.5882 -1.4384 22 6 -2.9787 -2.3798 -0.0926 23 7 -0.0349 -2.4312 0.0005 24 1 -0.4850 0.8401 -0.0004 25 1 3.0891 -3.6554 -0.0021 26 1 1.8255 -5.7895 -0.0015 27 1 -0.6550 -5.7119 0.0103 28 1 -2.7893 -5.6426 0.1922 29 1 -5.9801 -1.9161 0.8144 30 1 -5.0968 -0.8531 -0.3073 31 1 -6.3248 -3.3878 -1.4975 32 1 -6.0190 -0.3976 -2.3918 33 1 -6.6505 -1.7820 -3.4337 34 1 -8.5328 -2.1710 -1.7776 35 1 -7.9022 -0.7869 -0.7348 36 1 -2.6171 -1.3660 -0.1826 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240510686.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:41 Heat of formation + Delta-G solvation = 131.802440 kcal Electronic energy + Delta-G solvation = -19286.794738 eV Core-core repulsion = 16352.263538 eV Total energy + Delta-G solvation = -2934.531199 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.60471 -37.96905 -37.47788 -33.67715 -32.53443 -31.05944 -30.19996 -28.60181 -26.77844 -25.29099 -22.55466 -22.09618 -21.80103 -21.01094 -19.76933 -19.28638 -17.53160 -16.59256 -15.59611 -15.19620 -14.81960 -14.47464 -14.37462 -14.05931 -13.69841 -13.39372 -12.88714 -12.56262 -12.11944 -12.10077 -11.76160 -11.69997 -11.51022 -11.18739 -11.03861 -10.71611 -10.59500 -10.56502 -10.26749 -10.13531 -9.79727 -9.41490 -8.88995 -8.65291 -7.94289 -7.54553 -6.93285 -6.38667 -4.48470 2.28539 2.67103 2.87698 2.96591 3.07464 3.10737 3.24000 3.65510 3.83425 3.95470 4.40518 4.71406 4.80027 4.85836 5.04046 5.23703 5.42995 5.47294 5.55997 5.63906 5.71627 5.90501 5.92785 6.01952 6.05020 6.16487 6.28615 6.54774 6.65520 6.81556 7.02787 7.09926 7.22546 7.40456 7.55694 7.67444 7.81611 8.10384 8.21270 8.29813 8.71033 8.97665 10.14288 10.33688 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.016473 B = 0.005484 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.339322 B = 5104.989566 C = 6594.990564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.722 5.722 2 C 0.074 3.926 3 Si 0.906 3.094 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.435 4.435 8 H 0.082 0.918 9 C 0.262 3.738 10 C -0.282 4.282 11 C -0.058 4.058 12 C -0.304 4.304 13 C 0.222 3.778 14 C -0.175 4.175 15 C 0.063 3.937 16 N -0.315 5.315 17 N -0.380 5.380 18 C 0.170 3.830 19 C -0.165 4.165 20 C -0.178 4.178 21 C -0.173 4.173 22 C 0.098 3.902 23 N -0.478 5.478 24 H 0.269 0.731 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.179 0.821 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.575 0.139 -1.597 10.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.344 5.344 2 C -0.151 4.151 3 Si 0.730 3.270 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.467 4.467 8 H 0.100 0.900 9 C 0.136 3.864 10 C -0.305 4.305 11 C -0.082 4.082 12 C -0.327 4.327 13 C 0.077 3.923 14 C -0.187 4.187 15 C -0.124 4.124 16 N -0.135 5.135 17 N -0.162 5.162 18 C 0.048 3.952 19 C -0.184 4.184 20 C -0.215 4.215 21 C -0.211 4.211 22 C -0.048 4.048 23 N -0.191 5.191 24 H 0.080 0.920 25 H 0.115 0.885 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.196 0.804 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.135 0.865 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -12.516 0.906 -1.569 12.646 hybrid contribution 1.819 0.058 -0.044 1.820 sum -10.697 0.964 -1.613 10.861 Atomic orbital electron populations 1.70117 1.07188 1.27322 1.29803 1.25992 0.94858 1.00830 0.93403 0.86427 0.80128 0.80595 0.79842 1.19026 1.20349 1.19030 1.19527 0.94140 0.89396 1.43642 0.90028 1.18476 0.87954 0.91883 0.88053 1.21734 0.98619 0.93639 1.16509 1.20756 0.93888 0.96550 0.96971 1.21096 0.94346 0.96735 1.20567 1.19021 0.89965 0.89772 0.93536 1.18847 0.92960 0.91475 1.15399 1.23890 0.89519 0.99763 0.99257 1.77014 1.21819 0.88740 1.25968 1.48294 1.05172 1.05035 1.57696 1.21142 0.84250 0.91521 0.98280 1.22593 0.98182 0.99482 0.98115 1.23101 1.02516 1.00880 0.95025 1.22962 0.92077 1.03109 1.02952 1.22906 0.82347 1.01378 0.98200 1.68748 1.07221 1.25286 1.17889 0.91984 0.88529 0.88689 0.88796 0.80365 0.89860 0.88679 0.86528 0.88447 0.88732 0.88589 0.88560 0.79518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.35 11.46 55.55 0.64 -17.71 16 2 C 0.07 1.83 5.50 -17.35 -0.10 1.74 16 3 Si 0.91 18.31 29.56 -169.99 -5.02 13.29 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.44 -11.58 9.14 -37.74 -0.34 -11.92 16 8 H 0.08 2.04 7.85 -52.48 -0.41 1.62 16 9 C 0.26 7.18 6.55 -85.01 -0.56 6.62 16 10 C -0.28 -7.03 9.83 -38.64 -0.38 -7.41 16 11 C -0.06 -1.31 10.15 -39.40 -0.40 -1.71 16 12 C -0.30 -6.97 9.63 -38.78 -0.37 -7.35 16 13 C 0.22 5.48 6.76 -82.93 -0.56 4.92 16 14 C -0.18 -3.78 6.05 -105.34 -0.64 -4.42 16 15 C 0.06 1.19 11.40 -17.04 -0.19 0.99 16 16 N -0.31 -5.76 12.17 30.82 0.38 -5.38 16 17 N -0.38 -6.52 3.67 -61.10 -0.22 -6.75 16 18 C 0.17 2.16 6.78 -4.04 -0.03 2.13 16 19 C -0.16 -1.91 5.92 -90.63 -0.54 -2.45 16 20 C -0.18 -1.80 10.18 -26.70 -0.27 -2.07 16 21 C -0.17 -1.54 10.25 -26.70 -0.27 -1.82 16 22 C 0.10 1.95 11.15 -16.90 -0.19 1.76 16 23 N -0.48 -12.97 7.55 -7.68 -0.06 -13.03 16 24 H 0.27 6.17 8.29 -40.82 -0.34 5.83 16 25 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 26 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 27 H 0.09 1.87 7.04 -52.49 -0.37 1.51 16 28 H 0.18 2.85 7.34 -52.49 -0.39 2.47 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.09 1.05 7.80 -51.93 -0.41 0.65 16 31 H 0.12 1.57 7.90 -51.93 -0.41 1.16 16 32 H 0.10 0.94 8.03 -51.93 -0.42 0.52 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.19 3.80 8.06 -52.48 -0.42 3.38 16 LS Contribution 316.01 15.07 4.76 4.76 Total: -1.00 -29.81 316.01 -8.87 -38.68 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -4.49 Total: 7.11 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -4.84 Total: -20.98 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.73 Total: -42.87 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.02 Total: 13.29 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.81 -8.87 -38.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240510686.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.482 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds