Wall clock time and date at job start Mon Mar 30 2020 01:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30753 * 1 3 3 Si 1.86798 * 120.00285 * 2 1 4 4 H 1.48498 * 109.47440 * 240.00391 * 3 2 1 5 5 H 1.48508 * 109.47221 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46975 * 119.99924 * 3 2 1 7 7 C 1.40011 * 119.99595 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99765 * 179.97438 * 7 2 1 9 9 C 1.41346 * 120.00227 * 359.97438 * 7 2 1 10 10 C 1.40679 * 119.76753 * 179.97438 * 9 7 2 11 11 C 1.38295 * 119.19865 * 179.97438 * 10 9 7 12 12 C 1.38680 * 118.69282 * 359.75276 * 11 10 9 13 13 C 1.39932 * 119.46781 * 0.51385 * 12 11 10 14 14 C 1.48261 * 119.61686 * 179.75069 * 13 12 11 15 15 C 1.40952 * 126.24650 * 4.75193 * 14 13 12 16 16 N 1.30621 * 108.06535 * 180.26552 * 15 14 13 17 17 N 1.40007 * 108.56289 * 359.58460 * 16 15 14 18 18 C 1.46504 * 125.86595 * 180.17193 * 17 16 15 19 19 C 1.52996 * 109.47431 * 305.29193 * 18 17 16 20 20 C 1.52999 * 117.49835 * 243.74616 * 19 18 17 21 21 C 1.52993 * 117.50040 * 175.08888 * 19 18 17 22 22 C 1.34671 * 108.26432 * 0.42367 * 17 16 15 23 23 N 1.32254 * 120.77502 * 359.47236 * 13 12 11 24 24 H 0.97002 * 119.99660 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.40434 * 0.02562 * 10 9 7 26 26 H 1.07998 * 120.65511 * 180.02562 * 11 10 9 27 27 H 1.08002 * 120.26964 * 180.24185 * 12 11 10 28 28 H 1.08002 * 125.96525 * 359.97438 * 15 14 13 29 29 H 1.09003 * 109.46577 * 65.29180 * 18 17 16 30 30 H 1.09001 * 109.46495 * 185.28899 * 18 17 16 31 31 H 1.09004 * 115.54806 * 29.41068 * 19 18 17 32 32 H 1.09003 * 117.50055 * 0.02562 * 20 19 18 33 33 H 1.08999 * 117.49712 * 145.01777 * 20 19 18 34 34 H 1.09002 * 117.50127 * 214.98314 * 21 19 18 35 35 H 1.09005 * 117.49626 * 359.97142 * 21 19 18 36 36 H 1.08004 * 126.19633 * 179.77889 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.0953 1.6964 -1.2125 5 1 1.2766 2.7465 0.0006 6 1 3.0953 1.6963 1.2125 7 6 2.0075 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3007 -2.4367 -0.0005 10 6 2.0090 -3.6521 -0.0016 11 6 1.3057 -4.8429 -0.0011 12 6 -0.0804 -4.7974 0.0058 13 6 -0.7285 -3.5573 0.0010 14 6 -2.2102 -3.5049 0.0027 15 6 -3.0830 -4.6071 0.1030 16 7 -4.3089 -4.1580 0.0631 17 7 -4.2691 -2.7634 -0.0535 18 6 -5.4314 -1.8746 -0.1265 19 6 -6.3447 -2.3221 -1.2696 20 6 -6.5409 -1.3535 -2.4375 21 6 -7.6765 -1.5882 -1.4384 22 6 -2.9787 -2.3798 -0.0926 23 7 -0.0349 -2.4312 0.0005 24 1 -0.4850 0.8401 -0.0004 25 1 3.0891 -3.6554 -0.0021 26 1 1.8255 -5.7895 -0.0015 27 1 -0.6550 -5.7119 0.0103 28 1 -2.7893 -5.6426 0.1922 29 1 -5.9801 -1.9161 0.8144 30 1 -5.0968 -0.8531 -0.3073 31 1 -6.3248 -3.3878 -1.4975 32 1 -6.0190 -0.3976 -2.3918 33 1 -6.6505 -1.7820 -3.4337 34 1 -8.5328 -2.1710 -1.7776 35 1 -7.9022 -0.7869 -0.7348 36 1 -2.6171 -1.3660 -0.1826 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240510686.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:40 Heat of formation + Delta-G solvation = 116.328356 kcal Electronic energy + Delta-G solvation = -19287.465744 eV Core-core repulsion = 16352.263538 eV Total energy + Delta-G solvation = -2935.202206 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.06857 -39.75719 -38.41518 -35.51214 -33.90916 -32.76101 -32.03736 -30.17516 -28.25335 -26.99419 -23.80619 -23.44192 -23.26210 -22.33024 -21.25011 -20.72441 -19.27719 -18.08437 -17.06075 -16.52667 -16.32685 -15.99258 -15.78993 -15.72708 -15.02600 -14.74950 -14.32087 -14.15848 -13.74222 -13.71760 -13.25306 -12.84281 -12.73627 -12.68575 -12.59165 -12.40295 -12.22184 -11.84650 -11.54111 -11.38769 -11.21247 -11.02277 -10.41516 -10.26827 -9.80457 -9.43030 -8.65907 -8.22926 -6.44025 0.59348 1.09077 1.22812 1.43116 1.53656 1.56389 1.59280 2.14597 2.26481 2.83536 2.99748 3.40679 3.83892 3.94269 3.99297 4.05027 4.09329 4.22214 4.24524 4.41503 4.48513 4.55099 4.75444 4.79096 4.83671 4.96269 4.97416 5.00891 5.19334 5.20811 5.22505 5.38469 5.53620 5.72036 5.79171 5.95887 6.14829 6.25492 6.35471 6.76139 6.82247 7.05121 8.26144 8.51237 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.016473 B = 0.005484 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.339322 B = 5104.989566 C = 6594.990564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.030 3.970 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.474 4.474 8 H 0.084 0.916 9 C 0.227 3.773 10 C -0.308 4.308 11 C -0.055 4.055 12 C -0.307 4.307 13 C 0.203 3.797 14 C -0.208 4.208 15 C 0.066 3.934 16 N -0.315 5.315 17 N -0.369 5.369 18 C 0.160 3.840 19 C -0.184 4.184 20 C -0.182 4.182 21 C -0.148 4.148 22 C 0.098 3.902 23 N -0.506 5.506 24 H 0.277 0.723 25 H 0.105 0.895 26 H 0.133 0.867 27 H 0.126 0.874 28 H 0.205 0.795 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.858 0.431 -1.610 11.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.192 4.192 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.505 4.505 8 H 0.102 0.898 9 C 0.101 3.899 10 C -0.331 4.331 11 C -0.079 4.079 12 C -0.329 4.329 13 C 0.059 3.941 14 C -0.221 4.221 15 C -0.121 4.121 16 N -0.136 5.136 17 N -0.150 5.150 18 C 0.040 3.960 19 C -0.203 4.203 20 C -0.219 4.219 21 C -0.185 4.185 22 C -0.051 4.051 23 N -0.220 5.220 24 H 0.088 0.912 25 H 0.123 0.877 26 H 0.151 0.849 27 H 0.144 0.856 28 H 0.221 0.779 29 H 0.118 0.882 30 H 0.129 0.871 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.113 0.887 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -13.838 1.176 -1.584 13.978 hybrid contribution 2.089 -0.109 -0.052 2.092 sum -11.749 1.067 -1.636 11.910 Atomic orbital electron populations 1.70197 1.08568 1.28728 1.29761 1.26842 0.95780 1.03989 0.92570 0.85261 0.78717 0.75892 0.79763 1.18675 1.19078 1.18721 1.19874 0.94561 0.90537 1.45534 0.89793 1.18960 0.88724 0.93234 0.88938 1.21929 0.99282 0.93972 1.17878 1.21174 0.94111 0.97385 0.95270 1.21500 0.94820 0.97429 1.19187 1.19591 0.91541 0.90043 0.92963 1.18937 0.92023 0.93220 1.17871 1.24192 0.88856 1.00352 0.98692 1.76992 1.21571 0.89339 1.25691 1.48624 1.05374 1.05070 1.55916 1.21561 0.83174 0.91512 0.99731 1.22427 1.00429 0.98679 0.98740 1.23188 1.03350 1.00499 0.94894 1.23079 0.91075 1.02464 1.01879 1.22764 0.83577 1.00706 0.98032 1.68719 1.07352 1.26805 1.19160 0.91206 0.87656 0.84950 0.85639 0.77869 0.88248 0.87142 0.88616 0.88010 0.88665 0.87416 0.86771 0.80519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.06 11.46 21.83 0.25 -38.81 16 2 C 0.03 1.52 5.50 85.28 0.47 1.99 16 3 Si 0.98 37.89 29.56 68.60 2.03 39.92 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 5 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 6 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 7 C -0.47 -26.03 9.14 23.47 0.21 -25.81 16 8 H 0.08 4.34 7.85 -2.91 -0.02 4.32 16 9 C 0.23 12.88 6.55 40.24 0.26 13.14 16 10 C -0.31 -15.61 9.83 22.88 0.22 -15.38 16 11 C -0.06 -2.48 10.15 22.39 0.23 -2.25 16 12 C -0.31 -13.82 9.63 22.79 0.22 -13.60 16 13 C 0.20 10.16 6.76 42.16 0.28 10.44 16 14 C -0.21 -9.05 6.05 -20.33 -0.12 -9.17 16 15 C 0.07 2.41 11.40 85.54 0.98 3.39 16 16 N -0.32 -11.18 12.17 -56.41 -0.69 -11.87 16 17 N -0.37 -12.40 3.67 -347.21 -1.27 -13.67 16 18 C 0.16 3.83 6.78 86.38 0.59 4.42 16 19 C -0.18 -3.99 5.92 -10.80 -0.06 -4.05 16 20 C -0.18 -3.36 10.18 30.62 0.31 -3.05 16 21 C -0.15 -2.22 10.25 30.61 0.31 -1.91 16 22 C 0.10 3.93 11.15 83.87 0.94 4.87 16 23 N -0.51 -28.35 7.55 -178.21 -1.35 -29.69 16 24 H 0.28 12.90 8.29 -92.71 -0.77 12.13 16 25 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 26 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 27 H 0.13 4.73 7.04 -2.91 -0.02 4.71 16 28 H 0.20 6.08 7.34 -2.91 -0.02 6.06 16 29 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.11 2.28 7.80 -2.39 -0.02 2.26 16 31 H 0.10 2.51 7.90 -2.38 -0.02 2.49 16 32 H 0.10 1.78 8.03 -2.39 -0.02 1.76 16 33 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.18 7.45 8.06 -2.91 -0.02 7.42 16 Total: -1.00 -65.96 316.01 4.89 -61.07 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 1.08 Total: 30.03 kcal Atomic # 6 Polarization: -41.82 SS G_CDS: 4.84 Total: -36.98 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -3.06 Total: -94.04 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.92 kcal Total: -65.96 4.89 -61.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240510686.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.394 kcal (2) G-P(sol) polarization free energy of solvation -65.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds