Wall clock time and date at job start Mon Mar 30 2020 01:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30717 * 1 3 3 Si 1.86801 * 120.00169 * 2 1 4 4 H 1.48504 * 109.47322 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46817 * 300.00002 * 3 2 1 6 6 H 1.48501 * 109.47252 * 60.00095 * 3 2 1 7 7 C 1.40132 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99840 * 164.00709 * 7 2 1 9 9 C 1.40887 * 119.99960 * 344.00367 * 7 2 1 10 10 C 1.41136 * 121.11132 * 334.99139 * 9 7 2 11 11 C 1.36432 * 119.11374 * 179.97438 * 10 9 7 12 12 N 1.32238 * 121.52241 * 0.02562 * 11 10 9 13 13 C 1.31655 * 122.50081 * 359.65106 * 12 11 10 14 14 C 1.39360 * 120.65104 * 0.63969 * 13 12 11 15 15 C 1.47853 * 120.78147 * 179.68098 * 14 13 12 16 16 C 1.41152 * 126.38057 * 129.74840 * 15 14 13 17 17 N 1.30532 * 108.11632 * 180.26130 * 16 15 14 18 18 N 1.39947 * 108.88009 * 359.58451 * 17 16 15 19 19 C 1.46504 * 125.80674 * 180.13979 * 18 17 16 20 20 C 1.52994 * 109.47096 * 305.33145 * 19 18 17 21 21 C 1.52998 * 117.50077 * 243.74664 * 20 19 18 22 22 C 1.53000 * 117.49915 * 175.08392 * 20 19 18 23 23 C 1.34688 * 108.39310 * 0.42001 * 18 17 16 24 24 H 0.97000 * 120.00148 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.44522 * 359.95203 * 10 9 7 26 26 H 1.08006 * 119.24018 * 179.97438 * 11 10 9 27 27 H 1.07995 * 119.67518 * 180.32286 * 13 12 11 28 28 H 1.08006 * 125.94085 * 359.97438 * 16 15 14 29 29 H 1.09006 * 109.46752 * 65.33424 * 19 18 17 30 30 H 1.08998 * 109.47119 * 185.32844 * 19 18 17 31 31 H 1.09005 * 115.54721 * 29.41761 * 20 19 18 32 32 H 1.09003 * 117.49705 * 359.97438 * 21 20 19 33 33 H 1.08997 * 117.49973 * 145.01989 * 21 20 19 34 34 H 1.09000 * 117.50001 * 214.97565 * 22 20 19 35 35 H 1.09000 * 117.49951 * 359.97438 * 22 20 19 36 36 H 1.07998 * 126.31305 * 179.75317 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 3.7013 1.3464 -0.0006 5 1 1.8824 2.3964 -1.2125 6 1 1.8825 2.3965 1.2125 7 6 2.0078 -1.2136 -0.0005 8 1 3.0565 -1.2315 -0.2583 9 6 1.3443 -2.4102 0.3352 10 6 0.1928 -2.4014 1.1511 11 6 -0.4179 -3.5841 1.4503 12 7 0.0447 -4.7359 0.9940 13 6 1.1094 -4.8153 0.2238 14 6 1.8123 -3.6674 -0.1373 15 6 3.0125 -3.7539 -0.9964 16 6 3.2652 -2.9968 -2.1606 17 7 4.4226 -3.3636 -2.6400 18 7 4.9632 -4.3530 -1.8110 19 6 6.2520 -5.0225 -2.0035 20 6 6.3052 -5.6331 -3.4053 21 6 6.4097 -7.1559 -3.5091 22 6 7.6200 -6.2807 -3.8444 23 6 4.0943 -4.5897 -0.8094 24 1 -0.4850 0.8400 0.0004 25 1 -0.1996 -1.4708 1.5339 26 1 -1.2990 -3.5798 2.0749 27 1 1.4445 -5.7800 -0.1274 28 1 2.6122 -2.2480 -2.5839 29 1 7.0583 -4.2974 -1.8921 30 1 6.3669 -5.8105 -1.2593 31 1 5.7203 -5.1157 -4.1659 32 1 6.4410 -7.7228 -2.5786 33 1 5.8939 -7.6405 -4.3381 34 1 7.8999 -6.1899 -4.8939 35 1 8.4472 -6.2714 -3.1348 36 1 4.2210 -5.3023 -0.0078 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240516679.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:36 Heat of formation + Delta-G solvation = 121.668215 kcal Electronic energy + Delta-G solvation = -19383.372792 eV Core-core repulsion = 16448.402140 eV Total energy + Delta-G solvation = -2934.970652 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.41351 -38.14332 -37.49608 -34.14783 -32.63227 -31.11839 -30.11556 -28.32348 -26.42663 -25.67693 -22.58582 -22.01700 -21.62061 -21.16203 -19.81934 -19.20142 -17.57340 -16.78184 -15.61063 -15.35630 -14.83410 -14.45457 -14.37278 -14.20430 -13.56825 -13.42061 -12.70276 -12.61237 -12.37862 -12.17990 -11.86383 -11.73999 -11.67238 -11.42087 -11.22938 -10.96637 -10.60148 -10.31572 -10.24411 -10.07806 -9.73629 -9.45170 -8.75551 -8.35971 -7.93718 -7.75700 -7.11346 -6.79069 -4.54968 2.35754 2.74701 2.82785 2.96267 3.03037 3.09151 3.25801 3.63950 3.76752 3.85467 4.40423 4.64976 4.69153 4.78348 5.01339 5.27182 5.41433 5.43235 5.49764 5.66941 5.68071 5.77434 5.88625 5.90143 6.07822 6.28744 6.42943 6.56232 6.66435 6.94706 6.97516 7.21527 7.35225 7.43627 7.57353 7.62668 7.91559 8.14024 8.41957 8.48598 8.73981 8.79430 9.67423 10.03786 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.018790 B = 0.005449 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.811056 B = 5137.735967 C = 6396.523527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.078 3.922 3 Si 0.907 3.093 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.439 4.439 8 H 0.085 0.915 9 C 0.142 3.858 10 C -0.209 4.209 11 C 0.078 3.922 12 N -0.579 5.579 13 C 0.119 3.881 14 C -0.186 4.186 15 C -0.124 4.124 16 C 0.073 3.927 17 N -0.316 5.316 18 N -0.379 5.379 19 C 0.173 3.827 20 C -0.164 4.164 21 C -0.179 4.179 22 C -0.174 4.174 23 C 0.024 3.976 24 H 0.283 0.717 25 H 0.124 0.876 26 H 0.116 0.884 27 H 0.118 0.882 28 H 0.182 0.818 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.513 -6.001 -3.612 12.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.470 4.470 8 H 0.103 0.897 9 C 0.134 3.866 10 C -0.231 4.231 11 C -0.071 4.071 12 N -0.294 5.294 13 C -0.039 4.039 14 C -0.193 4.193 15 C -0.135 4.135 16 C -0.113 4.113 17 N -0.137 5.137 18 N -0.162 5.162 19 C 0.051 3.949 20 C -0.182 4.182 21 C -0.216 4.216 22 C -0.212 4.212 23 C -0.120 4.120 24 H 0.094 0.906 25 H 0.142 0.858 26 H 0.133 0.867 27 H 0.135 0.865 28 H 0.198 0.802 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.136 0.864 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 10.817 -6.498 -4.291 13.328 hybrid contribution 0.118 1.504 0.423 1.567 sum 10.934 -4.994 -3.868 12.628 Atomic orbital electron populations 1.69772 1.07719 1.29547 1.33586 1.26005 0.94699 1.01514 0.91986 0.86266 0.81174 0.80749 0.78721 1.18245 1.19753 1.19597 1.19571 0.97753 0.90400 1.39284 0.89708 1.17747 0.90230 0.91449 0.87190 1.21878 1.00249 0.98164 1.02833 1.21664 0.98182 0.88909 0.98319 1.67290 1.16077 1.29017 1.17012 1.22047 0.91564 0.95841 0.94442 1.18901 0.99233 0.94553 1.06613 1.18988 0.95989 1.00352 0.98204 1.24052 0.93509 0.98973 0.94781 1.76951 1.12446 1.06613 1.17667 1.48049 1.15975 1.31338 1.20835 1.21049 0.82592 0.95694 0.95600 1.22624 1.01637 0.95405 0.98579 1.23085 1.01975 0.93056 1.03474 1.22962 0.91649 1.04266 1.02321 1.22788 0.91298 1.03134 0.94770 0.90592 0.85824 0.86666 0.86487 0.80153 0.90074 0.89203 0.86435 0.88654 0.88747 0.88588 0.88629 0.81817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.16 10.95 55.56 0.61 -18.55 16 2 C 0.08 1.86 5.21 -17.32 -0.09 1.77 16 3 Si 0.91 18.10 29.59 -169.99 -5.03 13.07 16 4 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 7 C -0.44 -11.03 7.94 -37.87 -0.30 -11.33 16 8 H 0.08 2.13 6.76 -52.48 -0.35 1.78 16 9 C 0.14 3.64 5.61 -106.27 -0.60 3.04 16 10 C -0.21 -5.30 8.72 -39.13 -0.34 -5.64 16 11 C 0.08 1.87 11.08 -18.03 -0.20 1.67 16 12 N -0.58 -14.08 10.32 -13.36 -0.14 -14.22 16 13 C 0.12 2.74 10.90 -17.21 -0.19 2.55 16 14 C -0.19 -4.42 5.84 -104.02 -0.61 -5.03 16 15 C -0.12 -2.61 5.05 -104.95 -0.53 -3.14 16 16 C 0.07 1.51 10.46 -17.00 -0.18 1.34 16 17 N -0.32 -6.11 12.14 30.85 0.37 -5.74 16 18 N -0.38 -6.33 3.67 -60.72 -0.22 -6.56 16 19 C 0.17 2.08 6.78 -4.04 -0.03 2.06 16 20 C -0.16 -1.85 5.92 -90.62 -0.54 -2.38 16 21 C -0.18 -1.67 10.18 -26.69 -0.27 -1.94 16 22 C -0.17 -1.50 10.25 -26.69 -0.27 -1.77 16 23 C 0.02 0.43 11.41 -16.39 -0.19 0.25 16 24 H 0.28 6.29 8.29 -40.82 -0.34 5.95 16 25 H 0.12 3.18 6.25 -52.49 -0.33 2.85 16 26 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 27 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 28 H 0.18 3.74 8.00 -52.48 -0.42 3.32 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 0.86 7.80 -51.93 -0.40 0.46 16 31 H 0.12 1.60 7.89 -51.93 -0.41 1.19 16 32 H 0.10 0.80 8.03 -51.93 -0.42 0.38 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.16 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 313.09 15.07 4.72 4.72 Total: -1.00 -28.58 313.09 -8.44 -37.02 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -4.43 Total: 8.81 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -4.33 Total: -18.56 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.62 Total: -45.06 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.58 -8.44 -37.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240516679.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.689 kcal (2) G-P(sol) polarization free energy of solvation -28.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds