Wall clock time and date at job start Mon Mar 30 2020 01:14:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30717 * 1
3 3 Si 1.86801 * 120.00169 * 2 1
4 4 H 1.48504 * 109.47322 * 180.02562 * 3 2 1
5 5 H 1.48502 * 109.46817 * 300.00002 * 3 2 1
6 6 H 1.48501 * 109.47252 * 60.00095 * 3 2 1
7 7 C 1.40132 * 119.99968 * 180.02562 * 2 1 3
8 8 H 1.08007 * 119.99840 * 164.00709 * 7 2 1
9 9 C 1.40887 * 119.99960 * 344.00367 * 7 2 1
10 10 C 1.41136 * 121.11132 * 334.99139 * 9 7 2
11 11 C 1.36432 * 119.11374 * 179.97438 * 10 9 7
12 12 N 1.32238 * 121.52241 * 0.02562 * 11 10 9
13 13 C 1.31655 * 122.50081 * 359.65106 * 12 11 10
14 14 C 1.39360 * 120.65104 * 0.63969 * 13 12 11
15 15 C 1.47853 * 120.78147 * 179.68098 * 14 13 12
16 16 C 1.41152 * 126.38057 * 129.74840 * 15 14 13
17 17 N 1.30532 * 108.11632 * 180.26130 * 16 15 14
18 18 N 1.39947 * 108.88009 * 359.58451 * 17 16 15
19 19 C 1.46504 * 125.80674 * 180.13979 * 18 17 16
20 20 C 1.52994 * 109.47096 * 305.33145 * 19 18 17
21 21 C 1.52998 * 117.50077 * 243.74664 * 20 19 18
22 22 C 1.53000 * 117.49915 * 175.08392 * 20 19 18
23 23 C 1.34688 * 108.39310 * 0.42001 * 18 17 16
24 24 H 0.97000 * 120.00148 * 359.97438 * 1 2 3
25 25 H 1.07997 * 120.44522 * 359.95203 * 10 9 7
26 26 H 1.08006 * 119.24018 * 179.97438 * 11 10 9
27 27 H 1.07995 * 119.67518 * 180.32286 * 13 12 11
28 28 H 1.08006 * 125.94085 * 359.97438 * 16 15 14
29 29 H 1.09006 * 109.46752 * 65.33424 * 19 18 17
30 30 H 1.08998 * 109.47119 * 185.32844 * 19 18 17
31 31 H 1.09005 * 115.54721 * 29.41761 * 20 19 18
32 32 H 1.09003 * 117.49705 * 359.97438 * 21 20 19
33 33 H 1.08997 * 117.49973 * 145.01989 * 21 20 19
34 34 H 1.09000 * 117.50001 * 214.97565 * 22 20 19
35 35 H 1.09000 * 117.49951 * 359.97438 * 22 20 19
36 36 H 1.07998 * 126.31305 * 179.75317 * 23 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3072 0.0000 0.0000
3 14 2.2412 1.6177 0.0000
4 1 3.7013 1.3464 -0.0006
5 1 1.8824 2.3964 -1.2125
6 1 1.8825 2.3965 1.2125
7 6 2.0078 -1.2136 -0.0005
8 1 3.0565 -1.2315 -0.2583
9 6 1.3443 -2.4102 0.3352
10 6 0.1928 -2.4014 1.1511
11 6 -0.4179 -3.5841 1.4503
12 7 0.0447 -4.7359 0.9940
13 6 1.1094 -4.8153 0.2238
14 6 1.8123 -3.6674 -0.1373
15 6 3.0125 -3.7539 -0.9964
16 6 3.2652 -2.9968 -2.1606
17 7 4.4226 -3.3636 -2.6400
18 7 4.9632 -4.3530 -1.8110
19 6 6.2520 -5.0225 -2.0035
20 6 6.3052 -5.6331 -3.4053
21 6 6.4097 -7.1559 -3.5091
22 6 7.6200 -6.2807 -3.8444
23 6 4.0943 -4.5897 -0.8094
24 1 -0.4850 0.8400 0.0004
25 1 -0.1996 -1.4708 1.5339
26 1 -1.2990 -3.5798 2.0749
27 1 1.4445 -5.7800 -0.1274
28 1 2.6122 -2.2480 -2.5839
29 1 7.0583 -4.2974 -1.8921
30 1 6.3669 -5.8105 -1.2593
31 1 5.7203 -5.1157 -4.1659
32 1 6.4410 -7.7228 -2.5786
33 1 5.8939 -7.6405 -4.3381
34 1 7.8999 -6.1899 -4.8939
35 1 8.4472 -6.2714 -3.1348
36 1 4.2210 -5.3023 -0.0078
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001240516679.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:14:36
Heat of formation + Delta-G solvation = 121.668215 kcal
Electronic energy + Delta-G solvation = -19383.372792 eV
Core-core repulsion = 16448.402140 eV
Total energy + Delta-G solvation = -2934.970652 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 269.122 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.41351 -38.14332 -37.49608 -34.14783 -32.63227 -31.11839 -30.11556 -28.32348
-26.42663 -25.67693 -22.58582 -22.01700 -21.62061 -21.16203 -19.81934 -19.20142
-17.57340 -16.78184 -15.61063 -15.35630 -14.83410 -14.45457 -14.37278 -14.20430
-13.56825 -13.42061 -12.70276 -12.61237 -12.37862 -12.17990 -11.86383 -11.73999
-11.67238 -11.42087 -11.22938 -10.96637 -10.60148 -10.31572 -10.24411 -10.07806
-9.73629 -9.45170 -8.75551 -8.35971 -7.93718 -7.75700 -7.11346 -6.79069
-4.54968 2.35754 2.74701 2.82785 2.96267 3.03037 3.09151 3.25801
3.63950 3.76752 3.85467 4.40423 4.64976 4.69153 4.78348 5.01339
5.27182 5.41433 5.43235 5.49764 5.66941 5.68071 5.77434 5.88625
5.90143 6.07822 6.28744 6.42943 6.56232 6.66435 6.94706 6.97516
7.21527 7.35225 7.43627 7.57353 7.62668 7.91559 8.14024 8.41957
8.48598 8.73981 8.79430 9.67423 10.03786
Molecular weight = 269.12amu
Principal moments of inertia in cm(-1)
A = 0.018790 B = 0.005449 C = 0.004376
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1489.811056 B = 5137.735967 C = 6396.523527
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.781 5.781
2 C 0.078 3.922
3 Si 0.907 3.093
4 H -0.259 1.259
5 H -0.272 1.272
6 H -0.271 1.271
7 C -0.439 4.439
8 H 0.085 0.915
9 C 0.142 3.858
10 C -0.209 4.209
11 C 0.078 3.922
12 N -0.579 5.579
13 C 0.119 3.881
14 C -0.186 4.186
15 C -0.124 4.124
16 C 0.073 3.927
17 N -0.316 5.316
18 N -0.379 5.379
19 C 0.173 3.827
20 C -0.164 4.164
21 C -0.179 4.179
22 C -0.174 4.174
23 C 0.024 3.976
24 H 0.283 0.717
25 H 0.124 0.876
26 H 0.116 0.884
27 H 0.118 0.882
28 H 0.182 0.818
29 H 0.081 0.919
30 H 0.090 0.910
31 H 0.118 0.882
32 H 0.095 0.905
33 H 0.094 0.906
34 H 0.096 0.904
35 H 0.095 0.905
36 H 0.165 0.835
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.513 -6.001 -3.612 12.632
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.406 5.406
2 C -0.142 4.142
3 Si 0.731 3.269
4 H -0.182 1.182
5 H -0.198 1.198
6 H -0.196 1.196
7 C -0.470 4.470
8 H 0.103 0.897
9 C 0.134 3.866
10 C -0.231 4.231
11 C -0.071 4.071
12 N -0.294 5.294
13 C -0.039 4.039
14 C -0.193 4.193
15 C -0.135 4.135
16 C -0.113 4.113
17 N -0.137 5.137
18 N -0.162 5.162
19 C 0.051 3.949
20 C -0.182 4.182
21 C -0.216 4.216
22 C -0.212 4.212
23 C -0.120 4.120
24 H 0.094 0.906
25 H 0.142 0.858
26 H 0.133 0.867
27 H 0.135 0.865
28 H 0.198 0.802
29 H 0.099 0.901
30 H 0.108 0.892
31 H 0.136 0.864
32 H 0.113 0.887
33 H 0.113 0.887
34 H 0.114 0.886
35 H 0.114 0.886
36 H 0.182 0.818
Dipole moment (debyes) X Y Z Total
from point charges 10.817 -6.498 -4.291 13.328
hybrid contribution 0.118 1.504 0.423 1.567
sum 10.934 -4.994 -3.868 12.628
Atomic orbital electron populations
1.69772 1.07719 1.29547 1.33586 1.26005 0.94699 1.01514 0.91986
0.86266 0.81174 0.80749 0.78721 1.18245 1.19753 1.19597 1.19571
0.97753 0.90400 1.39284 0.89708 1.17747 0.90230 0.91449 0.87190
1.21878 1.00249 0.98164 1.02833 1.21664 0.98182 0.88909 0.98319
1.67290 1.16077 1.29017 1.17012 1.22047 0.91564 0.95841 0.94442
1.18901 0.99233 0.94553 1.06613 1.18988 0.95989 1.00352 0.98204
1.24052 0.93509 0.98973 0.94781 1.76951 1.12446 1.06613 1.17667
1.48049 1.15975 1.31338 1.20835 1.21049 0.82592 0.95694 0.95600
1.22624 1.01637 0.95405 0.98579 1.23085 1.01975 0.93056 1.03474
1.22962 0.91649 1.04266 1.02321 1.22788 0.91298 1.03134 0.94770
0.90592 0.85824 0.86666 0.86487 0.80153 0.90074 0.89203 0.86435
0.88654 0.88747 0.88588 0.88629 0.81817
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.78 -19.16 10.95 55.56 0.61 -18.55 16
2 C 0.08 1.86 5.21 -17.32 -0.09 1.77 16
3 Si 0.91 18.10 29.59 -169.99 -5.03 13.07 16
4 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16
5 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16
6 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16
7 C -0.44 -11.03 7.94 -37.87 -0.30 -11.33 16
8 H 0.08 2.13 6.76 -52.48 -0.35 1.78 16
9 C 0.14 3.64 5.61 -106.27 -0.60 3.04 16
10 C -0.21 -5.30 8.72 -39.13 -0.34 -5.64 16
11 C 0.08 1.87 11.08 -18.03 -0.20 1.67 16
12 N -0.58 -14.08 10.32 -13.36 -0.14 -14.22 16
13 C 0.12 2.74 10.90 -17.21 -0.19 2.55 16
14 C -0.19 -4.42 5.84 -104.02 -0.61 -5.03 16
15 C -0.12 -2.61 5.05 -104.95 -0.53 -3.14 16
16 C 0.07 1.51 10.46 -17.00 -0.18 1.34 16
17 N -0.32 -6.11 12.14 30.85 0.37 -5.74 16
18 N -0.38 -6.33 3.67 -60.72 -0.22 -6.56 16
19 C 0.17 2.08 6.78 -4.04 -0.03 2.06 16
20 C -0.16 -1.85 5.92 -90.62 -0.54 -2.38 16
21 C -0.18 -1.67 10.18 -26.69 -0.27 -1.94 16
22 C -0.17 -1.50 10.25 -26.69 -0.27 -1.77 16
23 C 0.02 0.43 11.41 -16.39 -0.19 0.25 16
24 H 0.28 6.29 8.29 -40.82 -0.34 5.95 16
25 H 0.12 3.18 6.25 -52.49 -0.33 2.85 16
26 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16
27 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16
28 H 0.18 3.74 8.00 -52.48 -0.42 3.32 16
29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16
30 H 0.09 0.86 7.80 -51.93 -0.40 0.46 16
31 H 0.12 1.60 7.89 -51.93 -0.41 1.19 16
32 H 0.10 0.80 8.03 -51.93 -0.42 0.38 16
33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16
34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16
35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16
36 H 0.16 2.45 8.06 -52.49 -0.42 2.03 16
LS Contribution 313.09 15.07 4.72 4.72
Total: -1.00 -28.58 313.09 -8.44 -37.02
By element:
Atomic # 1 Polarization: 13.23 SS G_CDS: -4.43 Total: 8.81 kcal
Atomic # 6 Polarization: -14.23 SS G_CDS: -4.33 Total: -18.56 kcal
Atomic # 7 Polarization: -45.68 SS G_CDS: 0.62 Total: -45.06 kcal
Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal
Total LS contribution 4.72 Total: 4.72 kcal
Total: -28.58 -8.44 -37.02 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001240516679.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 158.689 kcal
(2) G-P(sol) polarization free energy of solvation -28.577 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.113 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.021 kcal
(6) G-S(sol) free energy of system = (1) + (5) 121.668 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds