Wall clock time and date at job start Mon Mar 30 2020 01:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30717 * 1 3 3 Si 1.86801 * 120.00169 * 2 1 4 4 H 1.48504 * 109.47322 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46817 * 300.00002 * 3 2 1 6 6 H 1.48501 * 109.47252 * 60.00095 * 3 2 1 7 7 C 1.40132 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99840 * 164.00709 * 7 2 1 9 9 C 1.40887 * 119.99960 * 344.00367 * 7 2 1 10 10 C 1.41136 * 121.11132 * 334.99139 * 9 7 2 11 11 C 1.36432 * 119.11374 * 179.97438 * 10 9 7 12 12 N 1.32238 * 121.52241 * 0.02562 * 11 10 9 13 13 C 1.31655 * 122.50081 * 359.65106 * 12 11 10 14 14 C 1.39360 * 120.65104 * 0.63969 * 13 12 11 15 15 C 1.47853 * 120.78147 * 179.68098 * 14 13 12 16 16 C 1.41152 * 126.38057 * 129.74840 * 15 14 13 17 17 N 1.30532 * 108.11632 * 180.26130 * 16 15 14 18 18 N 1.39947 * 108.88009 * 359.58451 * 17 16 15 19 19 C 1.46504 * 125.80674 * 180.13979 * 18 17 16 20 20 C 1.52994 * 109.47096 * 305.33145 * 19 18 17 21 21 C 1.52998 * 117.50077 * 243.74664 * 20 19 18 22 22 C 1.53000 * 117.49915 * 175.08392 * 20 19 18 23 23 C 1.34688 * 108.39310 * 0.42001 * 18 17 16 24 24 H 0.97000 * 120.00148 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.44522 * 359.95203 * 10 9 7 26 26 H 1.08006 * 119.24018 * 179.97438 * 11 10 9 27 27 H 1.07995 * 119.67518 * 180.32286 * 13 12 11 28 28 H 1.08006 * 125.94085 * 359.97438 * 16 15 14 29 29 H 1.09006 * 109.46752 * 65.33424 * 19 18 17 30 30 H 1.08998 * 109.47119 * 185.32844 * 19 18 17 31 31 H 1.09005 * 115.54721 * 29.41761 * 20 19 18 32 32 H 1.09003 * 117.49705 * 359.97438 * 21 20 19 33 33 H 1.08997 * 117.49973 * 145.01989 * 21 20 19 34 34 H 1.09000 * 117.50001 * 214.97565 * 22 20 19 35 35 H 1.09000 * 117.49951 * 359.97438 * 22 20 19 36 36 H 1.07998 * 126.31305 * 179.75317 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 3.7013 1.3464 -0.0006 5 1 1.8824 2.3964 -1.2125 6 1 1.8825 2.3965 1.2125 7 6 2.0078 -1.2136 -0.0005 8 1 3.0565 -1.2315 -0.2583 9 6 1.3443 -2.4102 0.3352 10 6 0.1928 -2.4014 1.1511 11 6 -0.4179 -3.5841 1.4503 12 7 0.0447 -4.7359 0.9940 13 6 1.1094 -4.8153 0.2238 14 6 1.8123 -3.6674 -0.1373 15 6 3.0125 -3.7539 -0.9964 16 6 3.2652 -2.9968 -2.1606 17 7 4.4226 -3.3636 -2.6400 18 7 4.9632 -4.3530 -1.8110 19 6 6.2520 -5.0225 -2.0035 20 6 6.3052 -5.6331 -3.4053 21 6 6.4097 -7.1559 -3.5091 22 6 7.6200 -6.2807 -3.8444 23 6 4.0943 -4.5897 -0.8094 24 1 -0.4850 0.8400 0.0004 25 1 -0.1996 -1.4708 1.5339 26 1 -1.2990 -3.5798 2.0749 27 1 1.4445 -5.7800 -0.1274 28 1 2.6122 -2.2480 -2.5839 29 1 7.0583 -4.2974 -1.8921 30 1 6.3669 -5.8105 -1.2593 31 1 5.7203 -5.1157 -4.1659 32 1 6.4410 -7.7228 -2.5786 33 1 5.8939 -7.6405 -4.3381 34 1 7.8999 -6.1899 -4.8939 35 1 8.4472 -6.2714 -3.1348 36 1 4.2210 -5.3023 -0.0078 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240516679.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:36 Heat of formation + Delta-G solvation = 106.907007 kcal Electronic energy + Delta-G solvation = -19384.012886 eV Core-core repulsion = 16448.402140 eV Total energy + Delta-G solvation = -2935.610746 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.87009 -39.92238 -38.36651 -35.98243 -34.03183 -32.72960 -31.93570 -29.84335 -27.95109 -27.30220 -23.72724 -23.32739 -23.23588 -22.40510 -21.20799 -20.61498 -19.40862 -18.07824 -17.33644 -16.46196 -16.33390 -16.07868 -15.78489 -15.61682 -14.94938 -14.71279 -14.37521 -14.12179 -13.99012 -13.70823 -13.42142 -13.14947 -12.99403 -12.75905 -12.55332 -12.36986 -11.96616 -11.76374 -11.51465 -11.33633 -11.23860 -10.98496 -10.20194 -10.05837 -9.81858 -9.59619 -8.83428 -8.53456 -6.43748 0.72388 1.03448 1.16350 1.38319 1.51483 1.55267 1.73356 2.13433 2.18370 2.80696 2.87595 3.49068 3.78872 3.90910 4.02206 4.05294 4.11466 4.16280 4.30539 4.51408 4.55200 4.59107 4.78269 4.86310 4.94043 4.98240 5.00518 5.14573 5.17961 5.23840 5.25613 5.39083 5.56353 5.65570 5.84241 6.03668 6.26942 6.33026 6.60744 6.86541 6.90099 6.94666 7.80550 8.26201 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.018790 B = 0.005449 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.811056 B = 5137.735967 C = 6396.523527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.043 3.957 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.458 4.458 8 H 0.076 0.924 9 C 0.113 3.887 10 C -0.230 4.230 11 C 0.073 3.927 12 N -0.589 5.589 13 C 0.110 3.890 14 C -0.185 4.185 15 C -0.164 4.164 16 C 0.056 3.944 17 N -0.328 5.328 18 N -0.365 5.365 19 C 0.163 3.837 20 C -0.187 4.187 21 C -0.174 4.174 22 C -0.154 4.154 23 C 0.049 3.951 24 H 0.292 0.708 25 H 0.113 0.887 26 H 0.138 0.862 27 H 0.146 0.854 28 H 0.166 0.834 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.710 -7.138 -3.468 14.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.175 4.175 3 Si 0.796 3.204 4 H -0.188 1.188 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.488 4.488 8 H 0.094 0.906 9 C 0.105 3.895 10 C -0.253 4.253 11 C -0.076 4.076 12 N -0.304 5.304 13 C -0.046 4.046 14 C -0.191 4.191 15 C -0.176 4.176 16 C -0.128 4.128 17 N -0.150 5.150 18 N -0.147 5.147 19 C 0.043 3.957 20 C -0.206 4.206 21 C -0.211 4.211 22 C -0.192 4.192 23 C -0.098 4.098 24 H 0.103 0.897 25 H 0.130 0.870 26 H 0.155 0.845 27 H 0.163 0.837 28 H 0.184 0.816 29 H 0.109 0.891 30 H 0.142 0.858 31 H 0.105 0.895 32 H 0.129 0.871 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.134 0.866 36 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 13.031 -7.652 -4.174 15.677 hybrid contribution -0.468 1.732 0.312 1.821 sum 12.563 -5.919 -3.862 14.415 Atomic orbital electron populations 1.69805 1.08931 1.30878 1.33870 1.26729 0.95360 1.04253 0.91156 0.85254 0.79300 0.76689 0.79144 1.18786 1.18968 1.18596 1.19624 0.97455 0.91296 1.40426 0.90552 1.18133 0.90857 0.92738 0.87791 1.21867 1.01148 0.98260 1.03989 1.21972 0.98720 0.88535 0.98376 1.67359 1.16618 1.28896 1.17526 1.22473 0.91117 0.96918 0.94100 1.19146 0.99931 0.94006 1.05990 1.18974 0.96904 1.02845 0.98862 1.23871 0.94173 0.99420 0.95373 1.76900 1.11977 1.07670 1.18442 1.48469 1.16832 1.29955 1.19481 1.21533 0.80366 0.96620 0.97157 1.22434 1.04032 0.96705 0.97430 1.23191 1.02058 0.91651 1.04202 1.23075 0.91150 1.01794 1.03156 1.23189 0.89955 1.01769 0.94867 0.89736 0.86953 0.84471 0.83720 0.81638 0.89081 0.85801 0.89488 0.87093 0.88951 0.88103 0.86603 0.78341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.60 10.95 21.86 0.24 -40.36 16 2 C 0.04 2.07 5.21 85.32 0.44 2.52 16 3 Si 0.97 37.51 29.59 68.60 2.03 39.54 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 6 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 7 C -0.46 -23.66 7.94 23.38 0.19 -23.48 16 8 H 0.08 3.97 6.76 -2.91 -0.02 3.95 16 9 C 0.11 5.94 5.61 -20.93 -0.12 5.83 16 10 C -0.23 -11.99 8.72 22.56 0.20 -11.80 16 11 C 0.07 3.54 11.08 84.21 0.93 4.47 16 12 N -0.59 -28.39 10.32 -196.19 -2.02 -30.42 16 13 C 0.11 5.03 10.90 84.99 0.93 5.95 16 14 C -0.18 -8.82 5.84 -19.47 -0.11 -8.94 16 15 C -0.16 -6.91 5.05 -20.08 -0.10 -7.01 16 16 C 0.06 2.40 10.46 85.60 0.90 3.30 16 17 N -0.33 -12.66 12.14 -56.32 -0.68 -13.34 16 18 N -0.37 -11.51 3.67 -346.01 -1.27 -12.78 16 19 C 0.16 3.42 6.78 86.38 0.59 4.01 16 20 C -0.19 -3.81 5.92 -10.80 -0.06 -3.87 16 21 C -0.17 -2.71 10.18 30.62 0.31 -2.40 16 22 C -0.15 -2.14 10.25 30.62 0.31 -1.83 16 23 C 0.05 1.64 11.41 84.19 0.96 2.60 16 24 H 0.29 13.16 8.29 -92.71 -0.77 12.39 16 25 H 0.11 6.00 6.25 -2.91 -0.02 5.98 16 26 H 0.14 5.84 8.06 -2.91 -0.02 5.81 16 27 H 0.15 5.64 8.06 -2.91 -0.02 5.62 16 28 H 0.17 7.31 8.00 -2.91 -0.02 7.29 16 29 H 0.09 1.77 8.14 -2.38 -0.02 1.76 16 30 H 0.12 1.79 7.80 -2.39 -0.02 1.77 16 31 H 0.09 2.34 7.89 -2.38 -0.02 2.32 16 32 H 0.11 1.40 8.03 -2.39 -0.02 1.38 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 34 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.20 5.15 8.06 -2.91 -0.02 5.12 16 Total: -1.00 -63.01 313.09 4.74 -58.27 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: 1.09 Total: 29.73 kcal Atomic # 6 Polarization: -36.01 SS G_CDS: 5.36 Total: -30.65 kcal Atomic # 7 Polarization: -93.16 SS G_CDS: -3.74 Total: -96.90 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal Total: -63.01 4.74 -58.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240516679.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.181 kcal (2) G-P(sol) polarization free energy of solvation -63.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds