Wall clock time and date at job start Mon Mar 30 2020 01:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86799 * 120.00434 * 2 1 4 4 H 1.48493 * 109.47112 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47198 * 120.00011 * 3 2 1 6 6 H 1.48502 * 109.46909 * 240.00018 * 3 2 1 7 7 C 1.40030 * 119.99577 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00062 * 2.41558 * 7 2 1 9 9 C 1.41435 * 120.00122 * 182.41548 * 7 2 1 10 10 C 1.40428 * 119.78301 * 187.05195 * 9 7 2 11 11 C 1.39334 * 118.83937 * 179.97438 * 10 9 7 12 12 C 1.48388 * 120.82245 * 180.02562 * 11 10 9 13 13 C 1.40891 * 126.23205 * 359.69759 * 12 11 10 14 14 N 1.30655 * 108.07990 * 179.81537 * 13 12 11 15 15 N 1.40010 * 108.53508 * 0.43818 * 14 13 12 16 16 C 1.46502 * 125.87675 * 179.69333 * 15 14 13 17 17 C 1.53004 * 109.47320 * 305.02740 * 16 15 14 18 18 C 1.52997 * 117.49824 * 243.61966 * 17 16 15 19 19 C 1.52991 * 60.00315 * 252.51242 * 18 17 16 20 20 C 1.34729 * 108.24270 * 359.71901 * 15 14 13 21 21 C 1.40036 * 118.35751 * 0.02562 * 11 10 9 22 22 C 1.38458 * 119.42728 * 359.97438 * 21 11 10 23 23 N 1.31503 * 121.14618 * 359.72181 * 22 21 11 24 24 H 0.96993 * 120.00186 * 174.83808 * 1 2 3 25 25 H 1.07998 * 120.58042 * 359.97438 * 10 9 7 26 26 H 1.07999 * 125.96666 * 359.97278 * 13 12 11 27 27 H 1.09007 * 109.47243 * 65.02762 * 16 15 14 28 28 H 1.09001 * 109.47205 * 185.02281 * 16 15 14 29 29 H 1.09003 * 115.54749 * 29.33131 * 17 16 15 30 30 H 1.09000 * 117.49848 * 0.02562 * 18 17 16 31 31 H 1.09000 * 117.49670 * 145.01573 * 18 17 16 32 32 H 1.09004 * 117.49896 * 252.51830 * 19 18 17 33 33 H 1.09004 * 117.52086 * 107.47724 * 19 18 17 34 34 H 1.08002 * 126.19812 * 180.02562 * 20 15 14 35 35 H 1.08003 * 120.28824 * 180.02562 * 21 11 10 36 36 H 1.08005 * 119.42496 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2767 2.7464 -0.0006 5 1 3.0953 1.6963 1.2125 6 1 3.0953 1.6962 -1.2125 7 6 2.0075 -1.2127 0.0005 8 1 1.4681 -2.1477 -0.0385 9 6 3.4209 -1.2134 0.0522 10 6 4.1237 -2.4200 -0.0968 11 6 5.5159 -2.3978 -0.0432 12 6 6.3026 -3.6467 -0.1959 13 6 5.7811 -4.9401 -0.3963 14 7 6.7844 -5.7722 -0.4869 15 7 7.9754 -5.0512 -0.3391 16 6 9.3283 -5.6123 -0.3710 17 6 9.4406 -6.7323 0.6653 18 6 10.4225 -6.5296 1.8209 19 6 10.7471 -7.5274 0.7075 20 6 7.6631 -3.7526 -0.1620 21 6 6.1543 -1.1678 0.1583 22 6 5.3919 -0.0203 0.2965 23 7 4.0790 -0.0646 0.2366 24 1 -0.4850 -0.8366 -0.0756 25 1 3.5945 -3.3488 -0.2503 26 1 4.7348 -5.1985 -0.4657 27 1 9.5318 -6.0141 -1.3637 28 1 10.0516 -4.8301 -0.1405 29 1 8.5168 -7.2705 0.8778 30 1 10.9883 -5.5982 1.8432 31 1 10.1448 -6.9343 2.7942 32 1 10.6829 -8.5886 0.9481 33 1 11.5265 -7.2528 -0.0034 34 1 8.3625 -2.9421 -0.0194 35 1 7.2320 -1.1146 0.2046 36 1 5.8843 0.9282 0.4524 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240517024.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:28 Heat of formation + Delta-G solvation = 114.279930 kcal Electronic energy + Delta-G solvation = -18929.815833 eV Core-core repulsion = 15994.524800 eV Total energy + Delta-G solvation = -2935.291032 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.03393 -38.46160 -37.77935 -33.90204 -33.10588 -31.80818 -30.35808 -29.04175 -26.76943 -25.43826 -22.78784 -22.65670 -21.90439 -21.34519 -19.92837 -19.77098 -18.20780 -17.15275 -15.89245 -15.43997 -15.02199 -14.83635 -14.67692 -14.23027 -13.76694 -13.58520 -13.18542 -12.75187 -12.63445 -12.53797 -12.11637 -12.02989 -11.93032 -11.81112 -10.86216 -10.70112 -10.64031 -10.52640 -10.39756 -9.97734 -9.55066 -9.44813 -9.28489 -9.23901 -7.94203 -7.65012 -7.46002 -7.18709 -4.74811 1.80083 2.36453 2.50536 2.60385 3.41060 3.46767 3.66858 3.80500 4.08467 4.12191 4.46268 4.50513 4.56341 4.71576 4.72627 4.93651 4.98468 5.16432 5.24728 5.26346 5.49946 5.59192 5.60839 5.70872 5.72411 5.83079 5.90741 6.02158 6.25572 6.51275 6.64309 6.76131 7.04603 7.08667 7.30693 7.45224 7.51596 7.70227 7.88712 8.11489 8.33928 8.68121 9.52736 10.04928 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.044289 B = 0.003662 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.063075 B = 7645.294570 C = 8062.231326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.043 3.957 3 Si 1.157 2.843 4 H -0.335 1.335 5 H -0.280 1.280 6 H -0.294 1.294 7 C -0.475 4.475 8 H 0.081 0.919 9 C 0.254 3.746 10 C -0.251 4.251 11 C 0.062 3.938 12 C -0.178 4.178 13 C 0.065 3.935 14 N -0.302 5.302 15 N -0.374 5.374 16 C 0.169 3.831 17 C -0.168 4.168 18 C -0.178 4.178 19 C -0.171 4.171 20 C 0.063 3.937 21 C -0.311 4.311 22 C 0.153 3.847 23 N -0.579 5.579 24 H 0.282 0.718 25 H 0.105 0.895 26 H 0.184 0.816 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.174 0.826 35 H 0.100 0.900 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.538 -9.803 0.512 20.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.178 4.178 3 Si 0.993 3.007 4 H -0.269 1.269 5 H -0.208 1.208 6 H -0.222 1.222 7 C -0.506 4.506 8 H 0.099 0.901 9 C 0.131 3.869 10 C -0.274 4.274 11 C 0.056 3.944 12 C -0.189 4.189 13 C -0.121 4.121 14 N -0.122 5.122 15 N -0.155 5.155 16 C 0.047 3.953 17 C -0.187 4.187 18 C -0.215 4.215 19 C -0.209 4.209 20 C -0.083 4.083 21 C -0.335 4.335 22 C -0.008 4.008 23 N -0.298 5.298 24 H 0.093 0.907 25 H 0.123 0.877 26 H 0.201 0.799 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.136 0.864 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.191 0.809 35 H 0.118 0.882 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 18.220 -8.851 0.477 20.262 hybrid contribution 0.397 -1.890 -0.012 1.932 sum 18.617 -10.741 0.466 21.499 Atomic orbital electron populations 1.70653 1.08221 1.32731 1.31249 1.27842 0.95277 1.06334 0.88357 0.81761 0.70413 0.69234 0.79303 1.26891 1.20771 1.22199 1.20779 0.90388 0.96221 1.43257 0.90129 1.18564 0.93893 0.86871 0.87586 1.21571 0.92389 0.98602 1.14839 1.17986 0.92271 0.89823 0.94366 1.19115 0.91624 0.94158 1.14038 1.24022 0.98769 0.90880 0.98467 1.77135 0.89699 1.20494 1.24917 1.48321 1.05795 1.05127 1.56303 1.21193 0.78746 0.95761 0.99568 1.22593 0.95865 1.00662 0.99565 1.23096 1.02803 1.01258 0.94333 1.22967 0.97998 0.97880 1.02059 1.22499 0.96908 0.87141 1.01757 1.21037 0.98311 0.93072 1.21071 1.21979 0.89835 0.96594 0.92367 1.66461 1.09231 1.28280 1.25868 0.90679 0.87712 0.79898 0.89547 0.88716 0.86415 0.88531 0.88585 0.88399 0.88482 0.80915 0.88163 0.85566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.30 13.65 55.55 0.76 -21.54 16 2 C 0.04 1.18 5.52 -17.34 -0.10 1.08 16 3 Si 1.16 28.83 25.54 -169.99 -4.34 24.49 16 4 H -0.33 -8.25 7.11 56.52 0.40 -7.85 16 5 H -0.28 -6.92 6.68 56.52 0.38 -6.54 16 6 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 7 C -0.47 -13.07 9.58 -37.69 -0.36 -13.43 16 8 H 0.08 2.21 8.05 -52.48 -0.42 1.78 16 9 C 0.25 6.65 6.40 -85.02 -0.54 6.11 16 10 C -0.25 -5.89 9.38 -38.35 -0.36 -6.25 16 11 C 0.06 1.30 5.91 -104.64 -0.62 0.69 16 12 C -0.18 -3.17 6.05 -105.34 -0.64 -3.81 16 13 C 0.07 1.10 11.46 -17.05 -0.20 0.91 16 14 N -0.30 -4.85 12.19 30.81 0.38 -4.47 16 15 N -0.37 -5.11 3.67 -61.10 -0.22 -5.33 16 16 C 0.17 1.58 6.78 -4.04 -0.03 1.56 16 17 C -0.17 -1.53 5.93 -90.62 -0.54 -2.07 16 18 C -0.18 -1.34 10.18 -26.74 -0.27 -1.61 16 19 C -0.17 -1.16 10.25 -26.73 -0.27 -1.43 16 20 C 0.06 0.92 10.87 -16.91 -0.18 0.73 16 21 C -0.31 -6.24 9.66 -38.83 -0.38 -6.62 16 22 C 0.15 3.33 11.17 -17.61 -0.20 3.14 16 23 N -0.58 -14.76 4.54 -11.21 -0.05 -14.81 16 24 H 0.28 7.45 8.72 -40.82 -0.36 7.09 16 25 H 0.10 2.30 7.19 -52.49 -0.38 1.92 16 26 H 0.18 2.81 7.43 -52.49 -0.39 2.42 16 27 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.09 0.66 7.80 -51.93 -0.41 0.25 16 29 H 0.12 1.34 7.91 -51.93 -0.41 0.93 16 30 H 0.10 0.63 8.03 -51.93 -0.42 0.22 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.17 2.00 7.36 -52.49 -0.39 1.62 16 35 H 0.10 1.66 7.14 -52.48 -0.37 1.29 16 36 H 0.13 2.32 8.06 -52.48 -0.42 1.90 16 LS Contribution 309.85 15.07 4.67 4.67 Total: -1.00 -31.02 309.85 -7.96 -38.98 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -4.47 Total: -0.98 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -4.68 Total: -21.01 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.86 Total: -46.15 kcal Atomic # 14 Polarization: 28.83 SS G_CDS: -4.34 Total: 24.49 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.02 -7.96 -38.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240517024.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.262 kcal (2) G-P(sol) polarization free energy of solvation -31.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds