Wall clock time and date at job start Mon Mar 30 2020 01:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86799 * 120.00434 * 2 1 4 4 H 1.48493 * 109.47112 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47198 * 120.00011 * 3 2 1 6 6 H 1.48502 * 109.46909 * 240.00018 * 3 2 1 7 7 C 1.40030 * 119.99577 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00062 * 2.41558 * 7 2 1 9 9 C 1.41435 * 120.00122 * 182.41548 * 7 2 1 10 10 C 1.40428 * 119.78301 * 187.05195 * 9 7 2 11 11 C 1.39334 * 118.83937 * 179.97438 * 10 9 7 12 12 C 1.48388 * 120.82245 * 180.02562 * 11 10 9 13 13 C 1.40891 * 126.23205 * 359.69759 * 12 11 10 14 14 N 1.30655 * 108.07990 * 179.81537 * 13 12 11 15 15 N 1.40010 * 108.53508 * 0.43818 * 14 13 12 16 16 C 1.46502 * 125.87675 * 179.69333 * 15 14 13 17 17 C 1.53004 * 109.47320 * 305.02740 * 16 15 14 18 18 C 1.52997 * 117.49824 * 243.61966 * 17 16 15 19 19 C 1.52991 * 60.00315 * 252.51242 * 18 17 16 20 20 C 1.34729 * 108.24270 * 359.71901 * 15 14 13 21 21 C 1.40036 * 118.35751 * 0.02562 * 11 10 9 22 22 C 1.38458 * 119.42728 * 359.97438 * 21 11 10 23 23 N 1.31503 * 121.14618 * 359.72181 * 22 21 11 24 24 H 0.96993 * 120.00186 * 174.83808 * 1 2 3 25 25 H 1.07998 * 120.58042 * 359.97438 * 10 9 7 26 26 H 1.07999 * 125.96666 * 359.97278 * 13 12 11 27 27 H 1.09007 * 109.47243 * 65.02762 * 16 15 14 28 28 H 1.09001 * 109.47205 * 185.02281 * 16 15 14 29 29 H 1.09003 * 115.54749 * 29.33131 * 17 16 15 30 30 H 1.09000 * 117.49848 * 0.02562 * 18 17 16 31 31 H 1.09000 * 117.49670 * 145.01573 * 18 17 16 32 32 H 1.09004 * 117.49896 * 252.51830 * 19 18 17 33 33 H 1.09004 * 117.52086 * 107.47724 * 19 18 17 34 34 H 1.08002 * 126.19812 * 180.02562 * 20 15 14 35 35 H 1.08003 * 120.28824 * 180.02562 * 21 11 10 36 36 H 1.08005 * 119.42496 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2767 2.7464 -0.0006 5 1 3.0953 1.6963 1.2125 6 1 3.0953 1.6962 -1.2125 7 6 2.0075 -1.2127 0.0005 8 1 1.4681 -2.1477 -0.0385 9 6 3.4209 -1.2134 0.0522 10 6 4.1237 -2.4200 -0.0968 11 6 5.5159 -2.3978 -0.0432 12 6 6.3026 -3.6467 -0.1959 13 6 5.7811 -4.9401 -0.3963 14 7 6.7844 -5.7722 -0.4869 15 7 7.9754 -5.0512 -0.3391 16 6 9.3283 -5.6123 -0.3710 17 6 9.4406 -6.7323 0.6653 18 6 10.4225 -6.5296 1.8209 19 6 10.7471 -7.5274 0.7075 20 6 7.6631 -3.7526 -0.1620 21 6 6.1543 -1.1678 0.1583 22 6 5.3919 -0.0203 0.2965 23 7 4.0790 -0.0646 0.2366 24 1 -0.4850 -0.8366 -0.0756 25 1 3.5945 -3.3488 -0.2503 26 1 4.7348 -5.1985 -0.4657 27 1 9.5318 -6.0141 -1.3637 28 1 10.0516 -4.8301 -0.1405 29 1 8.5168 -7.2705 0.8778 30 1 10.9883 -5.5982 1.8432 31 1 10.1448 -6.9343 2.7942 32 1 10.6829 -8.5886 0.9481 33 1 11.5265 -7.2528 -0.0034 34 1 8.3625 -2.9421 -0.0194 35 1 7.2320 -1.1146 0.2046 36 1 5.8843 0.9282 0.4524 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240517024.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:28 Heat of formation + Delta-G solvation = 96.815524 kcal Electronic energy + Delta-G solvation = -18930.573146 eV Core-core repulsion = 15994.524800 eV Total energy + Delta-G solvation = -2936.048346 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.23377 -40.22205 -38.45698 -35.79590 -34.44478 -33.19204 -32.18605 -30.32651 -27.91175 -27.23900 -24.25738 -23.35569 -23.26413 -22.45903 -21.36237 -20.98765 -19.94955 -18.36749 -17.19022 -16.65298 -16.45893 -16.30269 -15.92796 -15.49512 -15.11230 -14.84634 -14.54505 -14.45636 -14.08129 -13.93649 -13.83499 -13.57373 -12.71965 -12.58610 -12.40162 -12.28506 -12.07295 -11.59258 -11.55318 -11.42058 -11.26107 -11.09353 -10.94668 -10.40746 -9.81108 -9.58639 -9.17585 -8.89355 -6.76953 0.39417 0.77920 1.00289 1.52116 1.65361 1.71824 2.08645 2.13816 2.54109 2.79110 2.82650 3.34212 3.69768 3.78817 3.87461 3.93227 4.00763 4.06069 4.16181 4.24795 4.35910 4.52156 4.60143 4.64875 4.76009 4.79344 4.80551 4.97094 4.98201 5.18469 5.21703 5.25947 5.42136 5.43210 5.58149 5.77671 5.94300 6.08082 6.10179 6.45426 6.64517 6.73472 7.67374 8.01159 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.044289 B = 0.003662 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.063075 B = 7645.294570 C = 8062.231326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.013 3.987 3 Si 1.194 2.806 4 H -0.335 1.335 5 H -0.277 1.277 6 H -0.294 1.294 7 C -0.518 4.518 8 H 0.059 0.941 9 C 0.241 3.759 10 C -0.278 4.278 11 C 0.074 3.926 12 C -0.222 4.222 13 C 0.053 3.947 14 N -0.319 5.319 15 N -0.363 5.363 16 C 0.160 3.840 17 C -0.188 4.188 18 C -0.176 4.176 19 C -0.155 4.155 20 C 0.094 3.906 21 C -0.284 4.284 22 C 0.133 3.867 23 N -0.602 5.602 24 H 0.277 0.723 25 H 0.102 0.898 26 H 0.181 0.819 27 H 0.098 0.902 28 H 0.132 0.868 29 H 0.086 0.914 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.216 0.784 35 H 0.151 0.849 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.924 -9.651 0.586 25.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.202 4.202 3 Si 1.027 2.973 4 H -0.269 1.269 5 H -0.204 1.204 6 H -0.223 1.223 7 C -0.551 4.551 8 H 0.077 0.923 9 C 0.117 3.883 10 C -0.300 4.300 11 C 0.066 3.934 12 C -0.234 4.234 13 C -0.133 4.133 14 N -0.140 5.140 15 N -0.143 5.143 16 C 0.041 3.959 17 C -0.207 4.207 18 C -0.213 4.213 19 C -0.192 4.192 20 C -0.055 4.055 21 C -0.307 4.307 22 C -0.025 4.025 23 N -0.322 5.322 24 H 0.088 0.912 25 H 0.120 0.880 26 H 0.198 0.802 27 H 0.116 0.884 28 H 0.150 0.850 29 H 0.105 0.895 30 H 0.132 0.868 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.136 0.864 34 H 0.233 0.767 35 H 0.169 0.831 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 23.640 -8.741 0.553 25.210 hybrid contribution -0.814 -2.178 -0.025 2.325 sum 22.825 -10.919 0.528 25.308 Atomic orbital electron populations 1.70677 1.08551 1.32400 1.34566 1.28621 0.95560 1.08126 0.87920 0.81271 0.69607 0.67268 0.79122 1.26919 1.20405 1.22281 1.20724 0.91639 0.95545 1.47178 0.92299 1.18646 0.93608 0.88300 0.87745 1.21649 0.94097 0.97785 1.16432 1.18297 0.91390 0.91853 0.91846 1.19024 0.93085 0.93043 1.18205 1.24102 0.99232 0.91178 0.98793 1.77126 0.90524 1.20984 1.25410 1.48745 1.06610 1.04976 1.53966 1.21671 0.76913 0.96976 1.00384 1.22438 0.95709 1.01557 1.01024 1.23197 1.01940 1.02280 0.93842 1.23072 0.96609 0.97854 1.01714 1.23021 0.96097 0.88240 0.98116 1.21627 1.00767 0.91665 1.16621 1.22744 0.88811 0.99163 0.91830 1.66375 1.11337 1.28083 1.26440 0.91213 0.87966 0.80192 0.88386 0.85031 0.89538 0.86809 0.89196 0.88303 0.86395 0.76736 0.83135 0.81657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.88 13.65 21.84 0.30 -48.58 16 2 C 0.01 0.73 5.52 85.29 0.47 1.21 16 3 Si 1.19 59.65 25.54 68.60 1.75 61.41 16 4 H -0.34 -16.42 7.11 99.48 0.71 -15.72 16 5 H -0.28 -13.42 6.68 99.48 0.66 -12.76 16 6 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 7 C -0.52 -30.24 9.58 23.49 0.23 -30.02 16 8 H 0.06 3.52 8.05 -2.91 -0.02 3.50 16 9 C 0.24 12.94 6.40 40.18 0.26 13.20 16 10 C -0.28 -13.20 9.38 23.07 0.22 -12.98 16 11 C 0.07 2.91 5.91 -19.87 -0.12 2.79 16 12 C -0.22 -7.31 6.05 -20.33 -0.12 -7.44 16 13 C 0.05 1.75 11.46 85.52 0.98 2.73 16 14 N -0.32 -9.77 12.19 -56.44 -0.69 -10.46 16 15 N -0.36 -8.52 3.67 -347.22 -1.27 -9.79 16 16 C 0.16 2.26 6.78 86.38 0.59 2.85 16 17 C -0.19 -2.87 5.93 -10.79 -0.06 -2.93 16 18 C -0.18 -2.01 10.18 30.59 0.31 -1.70 16 19 C -0.16 -1.53 10.25 30.59 0.31 -1.22 16 20 C 0.09 2.26 10.87 83.84 0.91 3.17 16 21 C -0.28 -10.07 9.66 22.76 0.22 -9.85 16 22 C 0.13 5.34 11.17 84.79 0.95 6.28 16 23 N -0.60 -30.18 4.54 -189.39 -0.86 -31.04 16 24 H 0.28 15.73 8.72 -92.71 -0.81 14.92 16 25 H 0.10 4.74 7.19 -2.91 -0.02 4.72 16 26 H 0.18 5.77 7.43 -2.91 -0.02 5.75 16 27 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.13 0.94 7.80 -2.39 -0.02 0.92 16 29 H 0.09 1.89 7.91 -2.39 -0.02 1.87 16 30 H 0.11 0.92 8.03 -2.39 -0.02 0.90 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.22 3.26 7.36 -2.91 -0.02 3.23 16 35 H 0.15 3.83 7.14 -2.91 -0.02 3.81 16 36 H 0.17 5.25 8.06 -2.91 -0.02 5.23 16 Total: -1.00 -71.21 309.85 5.37 -65.84 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 1.00 Total: 6.54 kcal Atomic # 6 Polarization: -39.04 SS G_CDS: 5.13 Total: -33.91 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -2.52 Total: -99.88 kcal Atomic # 14 Polarization: 59.65 SS G_CDS: 1.75 Total: 61.41 kcal Total: -71.21 5.37 -65.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240517024.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.658 kcal (2) G-P(sol) polarization free energy of solvation -71.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds