Wall clock time and date at job start Mon Mar 30 2020 00:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00179 * 2 1 4 4 C 1.50698 * 109.47258 * 179.97438 * 3 2 1 5 5 C 1.38333 * 119.87241 * 269.72210 * 4 3 2 6 6 C 1.38004 * 120.12340 * 179.71902 * 5 4 3 7 7 C 1.39382 * 119.87513 * 0.56128 * 6 5 4 8 8 C 1.48310 * 120.12916 * 179.70159 * 7 6 5 9 9 C 1.39909 * 119.60653 * 349.20312 * 8 7 6 10 10 C 1.38685 * 119.46455 * 180.02562 * 9 8 7 11 11 C 1.38294 * 118.69265 * 359.97438 * 10 9 8 12 12 C 1.40692 * 119.18276 * 0.02562 * 11 10 9 13 13 C 1.41375 * 119.76489 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99891 * 8.07498 * 13 12 11 15 15 C 1.40008 * 119.99984 * 188.07647 * 13 12 11 16 16 N 1.30747 * 120.00212 * 8.03662 * 15 13 12 17 17 Si 1.86808 * 119.99921 * 188.04200 * 15 13 12 18 18 H 1.48495 * 109.47071 * 84.98245 * 17 15 13 19 19 H 1.48506 * 109.46885 * 204.98054 * 17 15 13 20 20 H 1.48498 * 109.47050 * 324.98008 * 17 15 13 21 21 N 1.32214 * 119.60949 * 168.92821 * 8 7 6 22 22 C 1.39391 * 119.74698 * 359.71674 * 7 6 5 23 23 C 1.37997 * 119.87162 * 0.02562 * 22 7 6 24 24 H 1.08997 * 109.47386 * 300.00410 * 1 2 3 25 25 H 1.09007 * 109.46741 * 59.99967 * 1 2 3 26 26 H 1.09001 * 109.47422 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47198 * 300.00122 * 3 2 1 28 28 H 1.09003 * 109.47366 * 59.99832 * 3 2 1 29 29 H 1.08000 * 119.93868 * 359.97438 * 5 4 3 30 30 H 1.08001 * 120.06076 * 180.27252 * 6 5 4 31 31 H 1.08003 * 120.26308 * 359.97438 * 9 8 7 32 32 H 1.08004 * 120.65055 * 180.02562 * 10 9 8 33 33 H 1.07996 * 120.41052 * 179.97438 * 11 10 9 34 34 H 0.97005 * 120.00083 * 179.97438 * 16 15 13 35 35 H 1.08001 * 120.05797 * 180.02562 * 22 7 6 36 36 H 1.08005 * 119.93606 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1993 1.1380 1.2005 6 6 5.5746 1.0232 1.2071 7 6 6.2725 0.9678 0.0019 8 6 7.7510 0.8511 0.0025 9 6 8.4575 1.0243 1.1976 10 6 9.8401 0.9150 1.1947 11 6 10.4815 0.6358 0.0017 12 6 9.7157 0.4724 -1.1671 13 6 10.3588 0.1872 -2.3934 14 1 11.4159 -0.0333 -2.4103 15 6 9.6252 0.1907 -3.5859 16 7 8.3864 0.6089 -3.5903 17 14 10.4163 -0.4024 -5.1709 18 1 10.2911 -1.8791 -5.2642 19 1 9.7339 0.2265 -6.3303 20 1 11.8528 -0.0260 -5.1781 21 7 8.3853 0.5794 -1.1253 22 6 5.5756 1.0228 -1.2041 23 6 4.2000 1.1322 -1.1985 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6886 1.8463 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 3.6580 1.1860 2.1337 30 1 6.1094 0.9811 2.1445 31 1 7.9305 1.2420 2.1148 32 1 10.4046 1.0447 2.1063 33 1 11.5572 0.5452 -0.0324 34 1 7.8783 0.6117 -4.4166 35 1 6.1113 0.9799 -2.1409 36 1 3.6590 1.1754 -2.1323 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240949256.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:05 Heat of formation + Delta-G solvation = 6.698933 kcal Electronic energy + Delta-G solvation = -19146.163365 eV Core-core repulsion = 16173.914520 eV Total energy + Delta-G solvation = -2972.248845 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.19666 -38.10246 -37.16781 -33.75622 -32.27368 -30.81007 -30.13872 -29.55671 -27.08649 -25.82726 -24.91309 -22.39370 -22.01681 -20.89111 -19.94393 -17.52374 -16.47672 -16.28620 -15.81897 -15.59574 -14.79357 -14.73563 -14.51550 -13.79162 -13.61214 -13.38022 -12.83718 -12.71320 -12.49434 -12.22315 -11.99764 -11.87842 -11.41840 -11.20964 -11.09501 -10.78494 -10.68634 -10.51940 -10.36175 -9.93183 -9.71816 -9.42734 -8.77208 -8.36676 -8.09030 -7.64028 -7.23088 -6.52228 -4.53986 1.46918 2.00388 2.77741 3.01295 3.07842 3.10182 3.19157 3.88870 3.92700 4.45877 4.81448 5.00761 5.06485 5.24121 5.27550 5.32955 5.39106 5.53601 5.53827 5.63329 5.89066 5.99019 6.05418 6.23820 6.43607 6.45683 6.58596 6.72061 6.77640 6.88041 7.01515 7.11135 7.16019 7.29141 7.33125 7.55270 7.60643 7.70081 7.99200 8.19652 8.63122 8.87205 9.99919 10.26383 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.019848 B = 0.004852 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.366786 B = 5769.765976 C = 7033.940668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.108 3.892 4 C -0.108 4.108 5 C -0.110 4.110 6 C -0.115 4.115 7 C -0.009 4.009 8 C 0.173 3.827 9 C -0.299 4.299 10 C -0.060 4.060 11 C -0.272 4.272 12 C 0.260 3.740 13 C -0.435 4.435 14 H 0.084 0.916 15 C 0.075 3.925 16 N -0.723 5.723 17 Si 0.908 3.092 18 H -0.268 1.268 19 H -0.277 1.277 20 H -0.263 1.263 21 N -0.471 5.471 22 C -0.083 4.083 23 C -0.110 4.110 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.274 0.726 35 H 0.153 0.847 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.950 1.555 3.903 11.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.032 3.968 4 C -0.109 4.109 5 C -0.128 4.128 6 C -0.134 4.134 7 C -0.010 4.010 8 C 0.029 3.971 9 C -0.322 4.322 10 C -0.084 4.084 11 C -0.295 4.295 12 C 0.134 3.866 13 C -0.466 4.466 14 H 0.102 0.898 15 C -0.150 4.150 16 N -0.344 5.344 17 Si 0.732 3.268 18 H -0.193 1.193 19 H -0.202 1.202 20 H -0.187 1.187 21 N -0.183 5.183 22 C -0.102 4.102 23 C -0.128 4.128 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.102 0.898 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.133 0.867 30 H 0.141 0.859 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.085 0.915 35 H 0.171 0.829 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.438 1.316 2.948 11.885 hybrid contribution 0.634 0.097 0.186 0.668 sum -10.805 1.413 3.134 11.338 Atomic orbital electron populations 1.22729 0.81605 1.02585 0.99717 1.88022 1.19063 1.27939 1.95320 1.21327 0.90587 0.84638 1.00263 1.19469 0.93136 1.04366 0.93919 1.20756 0.93993 1.01241 0.96824 1.21216 0.93621 1.00711 0.97838 1.18925 0.92105 0.97117 0.92829 1.19719 0.91452 0.95742 0.90217 1.21209 0.94497 1.18830 0.97667 1.20799 0.94054 0.96932 0.96593 1.21808 0.98958 1.14274 0.94445 1.18494 0.87458 0.88466 0.92153 1.19565 0.96283 1.40719 0.90030 0.89761 1.25995 0.94619 0.93603 1.00799 1.69988 1.08013 1.28476 1.27926 0.86340 0.80287 0.79800 0.80369 1.19271 1.20181 1.18669 1.68619 1.09465 1.16502 1.23711 1.21704 0.93007 0.95572 0.99872 1.20974 0.94493 1.00503 0.96803 0.94284 0.94227 0.89783 0.92770 0.92887 0.86666 0.85865 0.88381 0.88425 0.88204 0.91451 0.82937 0.86571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -5.38 10.69 -35.23 -0.38 -5.76 16 3 C 0.11 1.40 6.06 36.00 0.22 1.62 16 4 C -0.11 -1.75 5.51 -104.55 -0.58 -2.32 16 5 C -0.11 -1.77 9.68 -39.63 -0.38 -2.16 16 6 C -0.11 -2.10 9.39 -39.24 -0.37 -2.47 16 7 C -0.01 -0.19 5.86 -104.90 -0.62 -0.81 16 8 C 0.17 4.27 6.71 -82.93 -0.56 3.72 16 9 C -0.30 -6.80 9.45 -38.79 -0.37 -7.17 16 10 C -0.06 -1.35 10.15 -39.40 -0.40 -1.75 16 11 C -0.27 -6.70 9.83 -38.63 -0.38 -7.07 16 12 C 0.26 7.09 6.51 -85.01 -0.55 6.54 16 13 C -0.43 -11.52 9.13 -37.73 -0.34 -11.87 16 14 H 0.08 2.09 7.86 -52.48 -0.41 1.68 16 15 C 0.07 1.88 5.46 -17.35 -0.09 1.78 16 16 N -0.72 -18.65 11.48 55.55 0.64 -18.01 16 17 Si 0.91 18.42 29.57 -169.99 -5.03 13.40 16 18 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 19 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 20 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 21 N -0.47 -12.84 7.12 -7.67 -0.05 -12.90 16 22 C -0.08 -1.74 9.57 -39.24 -0.38 -2.12 16 23 C -0.11 -1.93 9.68 -39.64 -0.38 -2.32 16 24 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.62 8.08 -51.93 -0.42 0.20 16 28 H 0.05 0.58 8.08 -51.93 -0.42 0.17 16 29 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.12 2.05 6.31 -52.49 -0.33 1.72 16 31 H 0.10 1.94 6.31 -52.48 -0.33 1.61 16 32 H 0.10 1.86 8.06 -52.48 -0.42 1.43 16 33 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 34 H 0.27 6.42 8.29 -40.82 -0.34 6.08 16 35 H 0.15 3.53 7.47 -52.49 -0.39 3.14 16 36 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 313.24 15.07 4.72 4.72 Total: -1.00 -29.50 313.24 -8.57 -38.07 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -4.40 Total: 5.47 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -4.07 Total: -24.98 kcal Atomic # 7 Polarization: -31.49 SS G_CDS: 0.58 Total: -30.91 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.38 Total: -5.76 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.50 -8.57 -38.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240949256.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.765 kcal (2) G-P(sol) polarization free energy of solvation -29.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds