Wall clock time and date at job start Mon Mar 30 2020 00:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00179 * 2 1 4 4 C 1.50698 * 109.47258 * 179.97438 * 3 2 1 5 5 C 1.38333 * 119.87241 * 269.72210 * 4 3 2 6 6 C 1.38004 * 120.12340 * 179.71902 * 5 4 3 7 7 C 1.39382 * 119.87513 * 0.56128 * 6 5 4 8 8 C 1.48310 * 120.12916 * 179.70159 * 7 6 5 9 9 C 1.39909 * 119.60653 * 349.20312 * 8 7 6 10 10 C 1.38685 * 119.46455 * 180.02562 * 9 8 7 11 11 C 1.38294 * 118.69265 * 359.97438 * 10 9 8 12 12 C 1.40692 * 119.18276 * 0.02562 * 11 10 9 13 13 C 1.41375 * 119.76489 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99891 * 8.07498 * 13 12 11 15 15 C 1.40008 * 119.99984 * 188.07647 * 13 12 11 16 16 N 1.30747 * 120.00212 * 8.03662 * 15 13 12 17 17 Si 1.86808 * 119.99921 * 188.04200 * 15 13 12 18 18 H 1.48495 * 109.47071 * 84.98245 * 17 15 13 19 19 H 1.48506 * 109.46885 * 204.98054 * 17 15 13 20 20 H 1.48498 * 109.47050 * 324.98008 * 17 15 13 21 21 N 1.32214 * 119.60949 * 168.92821 * 8 7 6 22 22 C 1.39391 * 119.74698 * 359.71674 * 7 6 5 23 23 C 1.37997 * 119.87162 * 0.02562 * 22 7 6 24 24 H 1.08997 * 109.47386 * 300.00410 * 1 2 3 25 25 H 1.09007 * 109.46741 * 59.99967 * 1 2 3 26 26 H 1.09001 * 109.47422 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47198 * 300.00122 * 3 2 1 28 28 H 1.09003 * 109.47366 * 59.99832 * 3 2 1 29 29 H 1.08000 * 119.93868 * 359.97438 * 5 4 3 30 30 H 1.08001 * 120.06076 * 180.27252 * 6 5 4 31 31 H 1.08003 * 120.26308 * 359.97438 * 9 8 7 32 32 H 1.08004 * 120.65055 * 180.02562 * 10 9 8 33 33 H 1.07996 * 120.41052 * 179.97438 * 11 10 9 34 34 H 0.97005 * 120.00083 * 179.97438 * 16 15 13 35 35 H 1.08001 * 120.05797 * 180.02562 * 22 7 6 36 36 H 1.08005 * 119.93606 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1993 1.1380 1.2005 6 6 5.5746 1.0232 1.2071 7 6 6.2725 0.9678 0.0019 8 6 7.7510 0.8511 0.0025 9 6 8.4575 1.0243 1.1976 10 6 9.8401 0.9150 1.1947 11 6 10.4815 0.6358 0.0017 12 6 9.7157 0.4724 -1.1671 13 6 10.3588 0.1872 -2.3934 14 1 11.4159 -0.0333 -2.4103 15 6 9.6252 0.1907 -3.5859 16 7 8.3864 0.6089 -3.5903 17 14 10.4163 -0.4024 -5.1709 18 1 10.2911 -1.8791 -5.2642 19 1 9.7339 0.2265 -6.3303 20 1 11.8528 -0.0260 -5.1781 21 7 8.3853 0.5794 -1.1253 22 6 5.5756 1.0228 -1.2041 23 6 4.2000 1.1322 -1.1985 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6886 1.8463 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 3.6580 1.1860 2.1337 30 1 6.1094 0.9811 2.1445 31 1 7.9305 1.2420 2.1148 32 1 10.4046 1.0447 2.1063 33 1 11.5572 0.5452 -0.0324 34 1 7.8783 0.6117 -4.4166 35 1 6.1113 0.9799 -2.1409 36 1 3.6590 1.1754 -2.1323 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240949256.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:04 Heat of formation + Delta-G solvation = -9.501444 kcal Electronic energy + Delta-G solvation = -19146.865866 eV Core-core repulsion = 16173.914520 eV Total energy + Delta-G solvation = -2972.951347 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.69390 -39.63205 -38.34316 -35.59301 -33.79823 -32.53236 -31.68043 -31.16355 -28.28275 -27.36906 -26.16409 -23.97797 -23.55728 -22.59322 -21.49415 -19.36750 -17.92981 -17.28334 -17.03849 -16.84159 -16.44199 -16.34373 -16.07256 -15.17006 -15.07497 -14.93157 -14.45857 -14.24606 -14.08030 -13.47643 -13.40659 -13.07817 -12.90938 -12.79111 -12.65287 -12.36944 -12.23463 -11.94815 -11.85200 -11.63908 -11.23399 -10.59952 -10.45006 -9.93426 -9.77624 -9.51381 -8.94846 -8.36991 -6.50744 -0.04610 0.58516 1.01811 1.25836 1.39439 1.52288 1.54568 2.21855 2.63756 2.94013 3.29718 3.72811 3.91602 3.98718 4.00913 4.18021 4.27321 4.45331 4.45631 4.55599 4.60099 4.63082 4.73625 4.77615 4.85240 4.89773 4.99764 5.06264 5.16061 5.25489 5.36866 5.57860 5.63892 5.68971 5.81137 5.89516 6.11166 6.19890 6.27004 6.28007 6.73610 6.93842 8.12341 8.43122 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.019848 B = 0.004852 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.366786 B = 5769.765976 C = 7033.940668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.415 6.415 3 C 0.109 3.891 4 C -0.100 4.100 5 C -0.102 4.102 6 C -0.112 4.112 7 C -0.046 4.046 8 C 0.151 3.849 9 C -0.300 4.300 10 C -0.057 4.057 11 C -0.296 4.296 12 C 0.224 3.776 13 C -0.473 4.473 14 H 0.088 0.912 15 C 0.030 3.970 16 N -0.756 5.756 17 Si 0.986 3.014 18 H -0.266 1.266 19 H -0.267 1.267 20 H -0.255 1.255 21 N -0.504 5.504 22 C -0.106 4.106 23 C -0.112 4.112 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.155 0.845 30 H 0.140 0.860 31 H 0.131 0.869 32 H 0.138 0.862 33 H 0.111 0.889 34 H 0.280 0.720 35 H 0.118 0.882 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.892 1.787 5.249 14.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.033 3.967 4 C -0.101 4.101 5 C -0.120 4.120 6 C -0.131 4.131 7 C -0.047 4.047 8 C 0.008 3.992 9 C -0.322 4.322 10 C -0.081 4.081 11 C -0.319 4.319 12 C 0.098 3.902 13 C -0.504 4.504 14 H 0.107 0.893 15 C -0.192 4.192 16 N -0.378 5.378 17 Si 0.806 3.194 18 H -0.191 1.191 19 H -0.192 1.192 20 H -0.178 1.178 21 N -0.217 5.217 22 C -0.125 4.125 23 C -0.130 4.130 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.111 0.889 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.172 0.828 30 H 0.158 0.842 31 H 0.149 0.851 32 H 0.156 0.844 33 H 0.129 0.871 34 H 0.090 0.910 35 H 0.136 0.864 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.392 1.558 4.321 14.158 hybrid contribution 1.060 0.053 -0.093 1.065 sum -12.332 1.611 4.228 13.136 Atomic orbital electron populations 1.22948 0.79296 1.03725 1.01176 1.87959 1.21590 1.28351 1.95645 1.21379 0.88024 0.84882 1.02419 1.19916 0.95395 1.01639 0.93107 1.21188 0.93139 0.99224 0.98468 1.21404 0.94720 0.99936 0.96991 1.19020 0.90915 1.00238 0.94507 1.20390 0.93346 0.95117 0.90390 1.21623 0.94889 1.17430 0.98275 1.21245 0.94371 0.95195 0.97301 1.22016 0.99607 1.15451 0.94798 1.19011 0.88241 0.89313 0.93596 1.19916 0.96857 1.42573 0.91067 0.89342 1.26910 0.95027 0.93262 1.03995 1.70104 1.09378 1.29258 1.29084 0.85170 0.79466 0.78996 0.75726 1.19071 1.19160 1.17841 1.68602 1.09716 1.17908 1.25473 1.21527 0.94549 0.97831 0.98608 1.21141 0.93112 1.00089 0.98661 0.92483 0.93055 0.88946 0.91289 0.90137 0.82786 0.84184 0.85106 0.84410 0.87091 0.90975 0.86367 0.84943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 11.01 113.37 1.25 1.63 16 2 O -0.42 -10.32 10.69 -148.98 -1.59 -11.91 16 3 C 0.11 2.41 6.06 71.24 0.43 2.84 16 4 C -0.10 -2.98 5.51 -19.82 -0.11 -3.09 16 5 C -0.10 -2.98 9.68 22.24 0.22 -2.76 16 6 C -0.11 -3.90 9.39 22.49 0.21 -3.69 16 7 C -0.05 -2.04 5.86 -20.04 -0.12 -2.15 16 8 C 0.15 7.70 6.71 42.17 0.28 7.99 16 9 C -0.30 -13.51 9.45 22.78 0.22 -13.29 16 10 C -0.06 -2.54 10.15 22.39 0.23 -2.32 16 11 C -0.30 -14.97 9.83 22.88 0.22 -14.75 16 12 C 0.22 12.86 6.51 40.26 0.26 13.12 16 13 C -0.47 -26.34 9.13 23.47 0.21 -26.12 16 14 H 0.09 4.60 7.86 -2.91 -0.02 4.58 16 15 C 0.03 1.56 5.46 85.28 0.47 2.02 16 16 N -0.76 -41.26 11.48 21.83 0.25 -41.01 16 17 Si 0.99 38.98 29.57 68.60 2.03 41.01 16 18 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 19 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 20 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 21 N -0.50 -29.02 7.12 -178.19 -1.27 -30.29 16 22 C -0.11 -4.65 9.57 22.49 0.22 -4.44 16 23 C -0.11 -3.92 9.68 22.23 0.22 -3.71 16 24 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 26 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.07 1.33 8.08 -2.39 -0.02 1.31 16 28 H 0.08 1.37 8.08 -2.39 -0.02 1.35 16 29 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 30 H 0.14 4.29 6.31 -2.91 -0.02 4.27 16 31 H 0.13 4.89 6.31 -2.91 -0.02 4.87 16 32 H 0.14 4.89 8.06 -2.91 -0.02 4.87 16 33 H 0.11 5.14 8.06 -2.91 -0.02 5.12 16 34 H 0.28 13.81 8.29 -92.70 -0.77 13.04 16 35 H 0.12 5.95 7.47 -2.91 -0.02 5.93 16 36 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -68.26 313.24 4.70 -63.55 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 1.08 Total: 27.36 kcal Atomic # 6 Polarization: -52.92 SS G_CDS: 4.20 Total: -48.71 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -1.02 Total: -71.30 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -1.59 Total: -11.91 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -68.26 4.70 -63.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240949256.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.053 kcal (2) G-P(sol) polarization free energy of solvation -68.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds