Wall clock time and date at job start Mon Mar 30 2020 00:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99985 * 2 1 4 4 C 1.50707 * 109.47175 * 180.02562 * 3 2 1 5 5 C 1.38323 * 119.87922 * 89.99655 * 4 3 2 6 6 C 1.38010 * 120.12058 * 179.97438 * 5 4 3 7 7 C 1.39345 * 119.87903 * 0.02562 * 6 5 4 8 8 C 1.48365 * 120.12425 * 180.02562 * 7 6 5 9 9 C 1.38900 * 119.61840 * 179.97438 * 8 7 6 10 10 C 1.40839 * 118.76741 * 179.97438 * 9 8 7 11 11 C 1.41522 * 120.98800 * 180.27279 * 10 9 8 12 12 H 1.08004 * 120.00063 * 150.07754 * 11 10 9 13 13 C 1.40048 * 120.00224 * 330.08505 * 11 10 9 14 14 N 1.30732 * 120.00166 * 162.10454 * 13 11 10 15 15 Si 1.86799 * 119.99725 * 342.09905 * 13 11 10 16 16 H 1.48501 * 109.46763 * 95.41013 * 15 13 11 17 17 H 1.48500 * 109.47045 * 215.41090 * 15 13 11 18 18 H 1.48499 * 109.47011 * 335.41296 * 15 13 11 19 19 C 1.41139 * 118.02694 * 0.02562 * 10 9 8 20 20 C 1.37746 * 119.07268 * 359.97438 * 19 10 9 21 21 N 1.31928 * 121.15457 * 359.97438 * 20 19 10 22 22 C 1.39354 * 119.75829 * 0.27222 * 7 6 5 23 23 C 1.38019 * 119.87108 * 359.45067 * 22 7 6 24 24 H 1.08998 * 109.47301 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47346 * 300.00156 * 1 2 3 26 26 H 1.09007 * 109.47287 * 60.00373 * 1 2 3 27 27 H 1.08999 * 109.47280 * 60.00025 * 3 2 1 28 28 H 1.09003 * 109.46989 * 299.99847 * 3 2 1 29 29 H 1.07998 * 119.93764 * 359.95886 * 5 4 3 30 30 H 1.08004 * 120.05890 * 180.02562 * 6 5 4 31 31 H 1.08006 * 120.61185 * 0.02562 * 9 8 7 32 32 H 0.96997 * 120.00221 * 180.02562 * 14 13 11 33 33 H 1.08003 * 120.46737 * 179.97438 * 19 10 9 34 34 H 1.07999 * 119.42699 * 180.02562 * 20 19 10 35 35 H 1.07993 * 120.06680 * 179.72475 * 22 7 6 36 36 H 1.07998 * 119.94017 * 180.25706 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1990 1.1322 -1.2003 6 6 5.5748 1.0238 -1.2067 7 6 6.2724 0.9685 -0.0017 8 6 7.7515 0.8525 -0.0022 9 6 8.4363 0.7987 1.2050 10 6 9.8402 0.6880 1.1836 11 6 10.5844 0.6237 2.3856 12 1 11.5183 0.0819 2.4143 13 6 10.1099 1.2625 3.5381 14 7 10.5828 0.9310 4.7109 15 14 8.8015 2.5885 3.3993 16 1 7.4619 1.9870 3.6209 17 1 9.0487 3.6367 4.4217 18 1 8.8536 3.1956 2.0451 19 6 10.4824 0.6378 -0.0722 20 6 9.7190 0.6978 -1.2172 21 7 8.4051 0.8003 -1.1570 22 6 5.5753 1.0173 1.2040 23 6 4.1998 1.1315 1.1986 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.6573 1.1746 -2.1336 30 1 6.1098 0.9820 -2.1440 31 1 7.9019 0.8401 2.1428 32 1 10.2540 1.3732 5.5092 33 1 11.5573 0.5535 -0.1346 34 1 10.2045 0.6594 -2.1812 35 1 6.1105 0.9703 2.1407 36 1 3.6588 1.1736 2.1323 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240949811.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:07 Heat of formation + Delta-G solvation = -0.890770 kcal Electronic energy + Delta-G solvation = -19183.568419 eV Core-core repulsion = 16210.990459 eV Total energy + Delta-G solvation = -2972.577960 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.50284 -38.42360 -37.36835 -34.12974 -32.62380 -31.49993 -30.59394 -29.50061 -27.03558 -26.03381 -25.18837 -23.00730 -21.96693 -21.31933 -20.05591 -17.79613 -16.63938 -16.44918 -16.01854 -15.72628 -15.35150 -14.99067 -14.48256 -13.95037 -13.94461 -13.64252 -13.15905 -13.07786 -12.94329 -12.48184 -12.33196 -12.18903 -11.62902 -11.55003 -11.04083 -10.92732 -10.89094 -10.66896 -10.58011 -9.91931 -9.83333 -9.47585 -8.99297 -8.61531 -8.31318 -8.19397 -7.42583 -7.11798 -4.77085 1.19136 1.74994 2.51921 2.58717 2.99806 3.10459 3.21593 3.71508 3.84324 4.23021 4.57467 4.85957 4.91092 5.02089 5.14612 5.17204 5.22143 5.32073 5.36602 5.40416 5.46124 5.75752 5.80978 5.92822 6.18860 6.27975 6.37180 6.47356 6.49899 6.64028 6.79825 6.85670 6.97628 7.00684 7.07830 7.19468 7.28841 7.58806 7.86915 8.15222 8.37912 8.59248 9.25723 9.89330 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.022438 B = 0.005041 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.592609 B = 5553.024121 C = 6485.453654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.107 3.893 4 C -0.105 4.105 5 C -0.106 4.106 6 C -0.091 4.091 7 C -0.012 4.012 8 C 0.166 3.834 9 C -0.262 4.262 10 C 0.108 3.892 11 C -0.440 4.440 12 H 0.096 0.904 13 C 0.088 3.912 14 N -0.796 5.796 15 Si 0.905 3.095 16 H -0.265 1.265 17 H -0.285 1.285 18 H -0.245 1.245 19 C -0.256 4.256 20 C 0.110 3.890 21 N -0.563 5.563 22 C -0.115 4.115 23 C -0.101 4.101 24 H 0.085 0.915 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.119 0.881 30 H 0.136 0.864 31 H 0.111 0.889 32 H 0.289 0.711 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.727 2.353 -5.491 15.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.031 3.969 4 C -0.105 4.105 5 C -0.124 4.124 6 C -0.110 4.110 7 C -0.013 4.013 8 C 0.034 3.966 9 C -0.285 4.285 10 C 0.100 3.900 11 C -0.470 4.470 12 H 0.114 0.886 13 C -0.134 4.134 14 N -0.419 5.419 15 Si 0.731 3.269 16 H -0.191 1.191 17 H -0.212 1.212 18 H -0.168 1.168 19 C -0.278 4.278 20 C -0.043 4.043 21 N -0.278 5.278 22 C -0.134 4.134 23 C -0.120 4.120 24 H 0.103 0.897 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.137 0.863 30 H 0.154 0.846 31 H 0.129 0.871 32 H 0.099 0.901 33 H 0.128 0.872 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.009 2.221 -6.005 16.317 hybrid contribution -0.089 0.694 1.062 1.271 sum -15.098 2.915 -4.943 16.152 Atomic orbital electron populations 1.22740 0.81400 1.02700 0.99802 1.88014 1.19238 1.27758 1.95345 1.21330 0.90294 0.84800 1.00506 1.19505 0.93419 1.03840 0.93770 1.20932 0.94211 1.00230 0.97004 1.21300 0.93155 0.97990 0.98552 1.18863 0.91755 0.97650 0.93068 1.19168 0.91053 0.96846 0.89550 1.21923 0.94950 1.14641 0.96958 1.17881 0.91065 0.87561 0.93501 1.19516 1.07592 1.28560 0.91293 0.88618 1.26167 0.95946 0.97030 0.94207 1.69635 1.37786 1.35326 0.99201 0.86406 0.80180 0.80306 0.80011 1.19057 1.21248 1.16772 1.21978 0.99443 1.13361 0.93058 1.21968 0.89403 0.95807 0.97127 1.67336 1.10015 1.22659 1.27794 1.21372 0.93952 0.99929 0.98143 1.20851 0.93863 1.00027 0.97213 0.89682 0.94175 0.94181 0.92653 0.92641 0.86253 0.84632 0.87125 0.90075 0.87176 0.85315 0.85495 0.86174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.96 10.69 -35.23 -0.38 -5.34 16 3 C 0.11 1.26 6.06 36.01 0.22 1.48 16 4 C -0.10 -1.55 5.51 -104.55 -0.58 -2.13 16 5 C -0.11 -1.60 9.68 -39.63 -0.38 -1.99 16 6 C -0.09 -1.62 9.57 -39.25 -0.38 -2.00 16 7 C -0.01 -0.25 5.88 -104.90 -0.62 -0.87 16 8 C 0.17 3.85 6.73 -83.04 -0.56 3.29 16 9 C -0.26 -6.38 6.63 -38.35 -0.25 -6.63 16 10 C 0.11 2.72 5.12 -106.56 -0.55 2.17 16 11 C -0.44 -11.60 9.63 -37.65 -0.36 -11.96 16 12 H 0.10 2.62 8.06 -52.48 -0.42 2.19 16 13 C 0.09 2.24 5.43 -17.34 -0.09 2.14 16 14 N -0.80 -20.49 13.92 55.55 0.77 -19.72 16 15 Si 0.91 20.28 24.55 -169.99 -4.17 16.11 16 16 H -0.26 -5.61 6.20 56.52 0.35 -5.26 16 17 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.24 -5.76 6.85 56.52 0.39 -5.37 16 19 C -0.26 -5.88 9.90 -38.66 -0.38 -6.26 16 20 C 0.11 2.37 11.15 -17.69 -0.20 2.17 16 21 N -0.56 -12.81 9.40 -9.94 -0.09 -12.90 16 22 C -0.12 -2.15 9.41 -39.25 -0.37 -2.52 16 23 C -0.10 -1.61 9.68 -39.63 -0.38 -1.99 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 28 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 29 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 30 H 0.14 2.37 7.53 -52.48 -0.40 1.98 16 31 H 0.11 2.63 2.98 -52.48 -0.16 2.47 16 32 H 0.29 6.69 8.29 -40.82 -0.34 6.35 16 33 H 0.11 2.32 8.06 -52.48 -0.42 1.89 16 34 H 0.13 2.30 8.06 -52.49 -0.42 1.87 16 35 H 0.13 2.42 5.65 -52.49 -0.30 2.13 16 36 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 305.43 15.07 4.60 4.60 Total: -1.00 -28.63 305.43 -7.31 -35.94 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -4.27 Total: 5.03 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -3.77 Total: -23.72 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: 0.68 Total: -32.62 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.38 Total: -5.34 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.17 Total: 16.11 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.63 -7.31 -35.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240949811.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.050 kcal (2) G-P(sol) polarization free energy of solvation -28.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds