Wall clock time and date at job start Mon Mar 30 2020 00:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99985 * 2 1 4 4 C 1.50707 * 109.47175 * 180.02562 * 3 2 1 5 5 C 1.38323 * 119.87922 * 89.99655 * 4 3 2 6 6 C 1.38010 * 120.12058 * 179.97438 * 5 4 3 7 7 C 1.39345 * 119.87903 * 0.02562 * 6 5 4 8 8 C 1.48365 * 120.12425 * 180.02562 * 7 6 5 9 9 C 1.38900 * 119.61840 * 179.97438 * 8 7 6 10 10 C 1.40839 * 118.76741 * 179.97438 * 9 8 7 11 11 C 1.41522 * 120.98800 * 180.27279 * 10 9 8 12 12 H 1.08004 * 120.00063 * 150.07754 * 11 10 9 13 13 C 1.40048 * 120.00224 * 330.08505 * 11 10 9 14 14 N 1.30732 * 120.00166 * 162.10454 * 13 11 10 15 15 Si 1.86799 * 119.99725 * 342.09905 * 13 11 10 16 16 H 1.48501 * 109.46763 * 95.41013 * 15 13 11 17 17 H 1.48500 * 109.47045 * 215.41090 * 15 13 11 18 18 H 1.48499 * 109.47011 * 335.41296 * 15 13 11 19 19 C 1.41139 * 118.02694 * 0.02562 * 10 9 8 20 20 C 1.37746 * 119.07268 * 359.97438 * 19 10 9 21 21 N 1.31928 * 121.15457 * 359.97438 * 20 19 10 22 22 C 1.39354 * 119.75829 * 0.27222 * 7 6 5 23 23 C 1.38019 * 119.87108 * 359.45067 * 22 7 6 24 24 H 1.08998 * 109.47301 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47346 * 300.00156 * 1 2 3 26 26 H 1.09007 * 109.47287 * 60.00373 * 1 2 3 27 27 H 1.08999 * 109.47280 * 60.00025 * 3 2 1 28 28 H 1.09003 * 109.46989 * 299.99847 * 3 2 1 29 29 H 1.07998 * 119.93764 * 359.95886 * 5 4 3 30 30 H 1.08004 * 120.05890 * 180.02562 * 6 5 4 31 31 H 1.08006 * 120.61185 * 0.02562 * 9 8 7 32 32 H 0.96997 * 120.00221 * 180.02562 * 14 13 11 33 33 H 1.08003 * 120.46737 * 179.97438 * 19 10 9 34 34 H 1.07999 * 119.42699 * 180.02562 * 20 19 10 35 35 H 1.07993 * 120.06680 * 179.72475 * 22 7 6 36 36 H 1.07998 * 119.94017 * 180.25706 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1990 1.1322 -1.2003 6 6 5.5748 1.0238 -1.2067 7 6 6.2724 0.9685 -0.0017 8 6 7.7515 0.8525 -0.0022 9 6 8.4363 0.7987 1.2050 10 6 9.8402 0.6880 1.1836 11 6 10.5844 0.6237 2.3856 12 1 11.5183 0.0819 2.4143 13 6 10.1099 1.2625 3.5381 14 7 10.5828 0.9310 4.7109 15 14 8.8015 2.5885 3.3993 16 1 7.4619 1.9870 3.6209 17 1 9.0487 3.6367 4.4217 18 1 8.8536 3.1956 2.0451 19 6 10.4824 0.6378 -0.0722 20 6 9.7190 0.6978 -1.2172 21 7 8.4051 0.8003 -1.1570 22 6 5.5753 1.0173 1.2040 23 6 4.1998 1.1315 1.1986 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.6573 1.1746 -2.1336 30 1 6.1098 0.9820 -2.1440 31 1 7.9019 0.8401 2.1428 32 1 10.2540 1.3732 5.5092 33 1 11.5573 0.5535 -0.1346 34 1 10.2045 0.6594 -2.1812 35 1 6.1105 0.9703 2.1407 36 1 3.6588 1.1736 2.1323 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240949811.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:06 Heat of formation + Delta-G solvation = -17.583308 kcal Electronic energy + Delta-G solvation = -19184.292262 eV Core-core repulsion = 16210.990459 eV Total energy + Delta-G solvation = -2973.301802 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.97856 -39.85308 -38.39894 -36.01867 -34.03770 -33.32416 -31.92667 -30.94946 -28.12354 -27.74024 -26.23982 -24.58184 -23.38704 -22.87643 -21.59040 -19.61484 -18.15955 -17.34841 -17.20495 -17.01051 -16.84657 -16.42259 -16.15354 -15.32956 -15.24686 -15.09545 -14.86803 -14.74765 -14.33356 -13.84325 -13.61389 -13.35450 -13.10903 -12.86123 -12.71784 -12.57594 -12.32301 -12.02151 -11.96908 -11.75268 -11.31725 -10.61420 -10.51445 -10.17947 -10.02010 -9.90164 -9.05916 -9.01177 -6.76217 -0.26375 0.45826 0.69733 0.91926 1.17993 1.33101 1.39011 2.01705 2.45247 2.74490 3.20501 3.43793 3.52777 3.81524 3.93958 4.06575 4.12059 4.29555 4.40912 4.43656 4.54427 4.58332 4.60622 4.63048 4.67641 4.80269 4.89898 4.90248 5.06395 5.10222 5.14720 5.29064 5.42541 5.56819 5.62503 5.73825 5.99442 6.02437 6.19442 6.25119 6.46834 6.63312 7.45503 8.02772 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.022438 B = 0.005041 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.592609 B = 5553.024121 C = 6485.453654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.106 3.894 4 C -0.095 4.095 5 C -0.100 4.100 6 C -0.095 4.095 7 C -0.051 4.051 8 C 0.164 3.836 9 C -0.281 4.281 10 C 0.093 3.907 11 C -0.474 4.474 12 H 0.069 0.931 13 C 0.059 3.941 14 N -0.829 5.829 15 Si 0.952 3.048 16 H -0.249 1.249 17 H -0.267 1.267 18 H -0.265 1.265 19 C -0.270 4.270 20 C 0.114 3.886 21 N -0.564 5.564 22 C -0.128 4.128 23 C -0.102 4.102 24 H 0.092 0.908 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.152 0.848 30 H 0.134 0.866 31 H 0.111 0.889 32 H 0.299 0.701 33 H 0.123 0.877 34 H 0.171 0.829 35 H 0.114 0.886 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.082 3.213 -6.910 19.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.031 3.969 4 C -0.096 4.096 5 C -0.118 4.118 6 C -0.113 4.113 7 C -0.052 4.052 8 C 0.031 3.969 9 C -0.304 4.304 10 C 0.085 3.915 11 C -0.505 4.505 12 H 0.087 0.913 13 C -0.159 4.159 14 N -0.454 5.454 15 Si 0.775 3.225 16 H -0.174 1.174 17 H -0.193 1.193 18 H -0.190 1.190 19 C -0.292 4.292 20 C -0.039 4.039 21 N -0.279 5.279 22 C -0.147 4.147 23 C -0.120 4.120 24 H 0.111 0.889 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.170 0.830 30 H 0.152 0.848 31 H 0.128 0.872 32 H 0.110 0.890 33 H 0.141 0.859 34 H 0.188 0.812 35 H 0.132 0.868 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.365 3.073 -7.409 20.040 hybrid contribution 0.809 0.370 1.332 1.601 sum -17.556 3.443 -6.077 18.894 Atomic orbital electron populations 1.22946 0.79244 1.03750 1.01193 1.87953 1.21599 1.28229 1.95662 1.21404 0.87868 0.84997 1.02655 1.19956 0.95552 1.01000 0.93050 1.21275 0.93137 0.98626 0.98725 1.21361 0.94415 0.98052 0.97485 1.18895 0.90326 1.01149 0.94786 1.19661 0.92914 0.95228 0.89093 1.22003 0.94662 1.15923 0.97771 1.18105 0.91767 0.87683 0.93979 1.19509 1.07486 1.30579 0.92890 0.91259 1.26710 0.97390 0.98106 0.93702 1.69640 1.39266 1.36630 0.99848 0.85705 0.79102 0.78580 0.79133 1.17354 1.19262 1.18960 1.22238 1.00457 1.13587 0.92915 1.22602 0.89086 0.93830 0.98398 1.67484 1.10523 1.22244 1.27625 1.21385 0.95301 1.00896 0.97133 1.21145 0.92726 0.99091 0.99032 0.88948 0.92907 0.92619 0.90814 0.90293 0.83001 0.84781 0.87172 0.88982 0.85886 0.81156 0.86830 0.83719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -9.12 10.69 -148.98 -1.59 -10.71 16 3 C 0.11 2.03 6.06 71.24 0.43 2.47 16 4 C -0.10 -2.48 5.51 -19.82 -0.11 -2.59 16 5 C -0.10 -2.70 9.68 22.24 0.22 -2.48 16 6 C -0.09 -3.20 9.57 22.48 0.22 -2.98 16 7 C -0.05 -2.03 5.88 -20.05 -0.12 -2.14 16 8 C 0.16 7.61 6.73 41.86 0.28 7.89 16 9 C -0.28 -13.99 6.63 23.07 0.15 -13.84 16 10 C 0.09 4.82 5.12 -21.12 -0.11 4.71 16 11 C -0.47 -26.32 9.63 23.52 0.23 -26.09 16 12 H 0.07 4.06 8.06 -2.91 -0.02 4.04 16 13 C 0.06 3.11 5.43 85.30 0.46 3.58 16 14 N -0.83 -44.02 13.92 21.84 0.30 -43.72 16 15 Si 0.95 42.46 24.55 68.60 1.68 44.15 16 16 H -0.25 -10.32 6.20 99.48 0.62 -9.70 16 17 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 18 H -0.27 -12.63 6.85 99.48 0.68 -11.95 16 19 C -0.27 -12.53 9.90 22.87 0.23 -12.30 16 20 C 0.11 4.79 11.15 84.56 0.94 5.73 16 21 N -0.56 -25.24 9.40 -185.36 -1.74 -26.99 16 22 C -0.13 -4.69 9.41 22.49 0.21 -4.48 16 23 C -0.10 -2.98 9.68 22.24 0.22 -2.77 16 24 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 27 H 0.07 1.15 8.08 -2.39 -0.02 1.13 16 28 H 0.08 1.16 8.08 -2.39 -0.02 1.14 16 29 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 30 H 0.13 4.48 7.53 -2.91 -0.02 4.46 16 31 H 0.11 5.38 2.98 -2.91 -0.01 5.37 16 32 H 0.30 14.15 8.29 -92.71 -0.77 13.38 16 33 H 0.12 5.25 8.06 -2.91 -0.02 5.22 16 34 H 0.17 5.61 8.06 -2.91 -0.02 5.59 16 35 H 0.11 4.36 5.65 -2.91 -0.02 4.35 16 36 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -63.68 305.43 4.12 -59.55 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.97 Total: 21.45 kcal Atomic # 6 Polarization: -48.22 SS G_CDS: 4.50 Total: -43.73 kcal Atomic # 7 Polarization: -69.27 SS G_CDS: -1.44 Total: -70.71 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -1.59 Total: -10.71 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.68 Total: 44.15 kcal Total: -63.68 4.12 -59.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240949811.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.970 kcal (2) G-P(sol) polarization free energy of solvation -63.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds