Wall clock time and date at job start Mon Mar 30 2020 00:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99596 * 2 1 4 4 C 1.50696 * 109.47032 * 180.02562 * 3 2 1 5 5 C 1.38326 * 119.88085 * 90.00100 * 4 3 2 6 6 C 1.38009 * 120.12130 * 179.97438 * 5 4 3 7 7 C 1.39348 * 119.88258 * 0.02562 * 6 5 4 8 8 C 1.48383 * 120.12351 * 180.02562 * 7 6 5 9 9 C 1.40036 * 120.82218 * 0.02562 * 8 7 6 10 10 C 1.38511 * 119.42395 * 179.97438 * 9 8 7 11 11 N 1.31478 * 121.14406 * 0.02562 * 10 9 8 12 12 C 1.33647 * 121.79298 * 359.97438 * 11 10 9 13 13 C 1.41426 * 119.77696 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99912 * 187.07025 * 13 12 11 15 15 C 1.40033 * 119.99947 * 7.07167 * 13 12 11 16 16 N 1.30741 * 120.00144 * 182.56910 * 15 13 12 17 17 Si 1.86809 * 120.00169 * 2.56807 * 15 13 12 18 18 H 1.48499 * 109.47093 * 179.97438 * 17 15 13 19 19 H 1.48495 * 109.46992 * 300.00230 * 17 15 13 20 20 H 1.48506 * 109.46797 * 59.99784 * 17 15 13 21 21 C 1.39302 * 120.82129 * 180.25959 * 8 7 6 22 22 C 1.39339 * 119.75254 * 0.27717 * 7 6 5 23 23 C 1.38022 * 119.88015 * 359.40140 * 22 7 6 24 24 H 1.09004 * 109.46817 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46875 * 299.99478 * 1 2 3 26 26 H 1.08993 * 109.47613 * 59.99575 * 1 2 3 27 27 H 1.09003 * 109.46701 * 60.00599 * 3 2 1 28 28 H 1.09000 * 109.47566 * 300.00402 * 3 2 1 29 29 H 1.08001 * 119.93523 * 0.02562 * 5 4 3 30 30 H 1.07999 * 120.06212 * 180.02562 * 6 5 4 31 31 H 1.07996 * 120.28944 * 359.97438 * 9 8 7 32 32 H 1.07998 * 119.42664 * 179.97438 * 10 9 8 33 33 H 0.96999 * 119.99741 * 354.84870 * 16 15 13 34 34 H 1.08005 * 120.58299 * 0.02562 * 21 8 7 35 35 H 1.08005 * 120.06092 * 179.72486 * 22 7 6 36 36 H 1.07992 * 119.94464 * 180.31827 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 -0.0006 5 6 4.1989 1.1325 -1.2003 6 6 5.5747 1.0241 -1.2067 7 6 6.2724 0.9687 -0.0017 8 6 7.7517 0.8528 -0.0023 9 6 8.4666 0.7980 -1.2052 10 6 9.8471 0.6903 -1.1719 11 7 10.4978 0.6381 -0.0307 12 6 9.8632 0.6866 1.1445 13 6 10.6058 0.6266 2.3467 14 1 10.0936 0.5502 3.2945 15 6 12.0050 0.6662 2.3081 16 7 12.6928 0.5602 3.4149 17 14 12.8890 0.8705 0.6751 18 1 14.3561 0.8826 0.9046 19 1 12.5371 -0.2586 -0.2228 20 1 12.4763 2.1507 0.0457 21 6 8.4632 0.7908 1.1937 22 6 5.5752 1.0173 1.2038 23 6 4.1998 1.1324 1.1986 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.6885 1.8463 0.8901 28 1 1.6885 1.8465 -0.8899 29 1 3.6573 1.1759 -2.1336 30 1 6.1098 0.9824 -2.1439 31 1 7.9461 0.8394 -2.1505 32 1 10.3985 0.6477 -2.0996 33 1 12.2348 0.5293 4.2694 34 1 7.9478 0.8259 2.1422 35 1 6.1106 0.9702 2.1407 36 1 3.6589 1.1753 2.1323 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240952386.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:31 Heat of formation + Delta-G solvation = -9.781259 kcal Electronic energy + Delta-G solvation = -18872.432867 eV Core-core repulsion = 15899.469386 eV Total energy + Delta-G solvation = -2972.963480 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.60743 -38.50173 -37.52679 -34.01250 -33.05873 -31.08232 -30.28412 -30.10974 -27.16992 -25.68399 -25.34878 -22.92999 -22.29369 -20.98090 -20.27611 -18.31788 -16.83772 -16.55151 -16.12833 -15.75129 -15.21094 -15.14621 -14.36211 -14.10734 -13.87279 -13.42249 -13.32959 -13.07264 -12.59489 -12.44979 -12.34724 -12.19749 -12.09834 -11.65217 -11.23485 -10.95077 -10.71088 -10.39309 -10.08522 -9.92093 -9.62948 -9.51002 -9.31194 -8.77417 -8.03567 -7.76965 -7.72765 -7.27154 -4.83534 1.07243 1.59117 2.50492 2.63898 3.58218 3.61974 3.73174 4.02714 4.18787 4.44304 4.65207 4.76800 4.79132 5.04007 5.05979 5.08252 5.17588 5.20882 5.26355 5.39246 5.48867 5.60007 5.67392 5.74451 5.97977 6.09640 6.27292 6.38451 6.43612 6.49622 6.66893 6.75819 6.91295 6.93358 7.07737 7.21494 7.36323 7.42674 7.62093 8.02187 8.23104 8.58156 9.42338 9.96874 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.042401 B = 0.003693 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.199994 B = 7580.248712 C = 8118.566545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.106 3.894 4 C -0.107 4.107 5 C -0.100 4.100 6 C -0.113 4.113 7 C -0.017 4.017 8 C 0.011 3.989 9 C -0.303 4.303 10 C 0.152 3.848 11 N -0.574 5.574 12 C 0.249 3.751 13 C -0.471 4.471 14 H 0.081 0.919 15 C 0.043 3.957 16 N -0.803 5.803 17 Si 1.156 2.844 18 H -0.333 1.333 19 H -0.279 1.279 20 H -0.293 1.293 21 C -0.239 4.239 22 C -0.114 4.114 23 C -0.098 4.098 24 H 0.085 0.915 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.107 0.893 32 H 0.130 0.870 33 H 0.283 0.717 34 H 0.109 0.891 35 H 0.128 0.872 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.507 1.891 -6.394 19.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.304 6.304 3 C 0.030 3.970 4 C -0.108 4.108 5 C -0.118 4.118 6 C -0.131 4.131 7 C -0.017 4.017 8 C 0.005 3.995 9 C -0.326 4.326 10 C -0.009 4.009 11 N -0.293 5.293 12 C 0.126 3.874 13 C -0.503 4.503 14 H 0.100 0.900 15 C -0.179 4.179 16 N -0.424 5.424 17 Si 0.991 3.009 18 H -0.267 1.267 19 H -0.206 1.206 20 H -0.221 1.221 21 C -0.261 4.261 22 C -0.132 4.132 23 C -0.116 4.116 24 H 0.104 0.896 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.138 0.862 30 H 0.146 0.854 31 H 0.125 0.875 32 H 0.147 0.853 33 H 0.094 0.906 34 H 0.127 0.873 35 H 0.146 0.854 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.053 1.685 -6.871 17.543 hybrid contribution -2.892 0.214 0.952 3.052 sum -18.945 1.899 -5.918 19.939 Atomic orbital electron populations 1.22748 0.81297 1.02757 0.99851 1.88012 1.19328 1.27708 1.95357 1.21327 0.90240 0.84850 1.00563 1.19501 0.93503 1.04017 0.93748 1.20892 0.94086 0.99695 0.97119 1.21259 0.93630 1.00214 0.98030 1.19077 0.92867 0.96756 0.92969 1.18701 0.89997 0.96685 0.94106 1.21184 0.94886 1.20178 0.96386 1.22049 0.91353 0.92118 0.95343 1.66510 1.38616 1.25555 0.98594 1.18598 0.89673 0.88026 0.91096 1.20801 0.93881 1.42666 0.92941 0.90042 1.27866 0.95556 0.88474 1.05974 1.70656 1.41044 1.30675 1.00013 0.81796 0.69571 0.79043 0.70500 1.26653 1.20635 1.22139 1.21757 0.94885 1.13298 0.96200 1.21325 0.93740 0.99861 0.98234 1.20910 0.94062 0.99464 0.97193 0.89636 0.94123 0.94148 0.92614 0.92635 0.86232 0.85430 0.87485 0.85273 0.90587 0.87350 0.85387 0.86191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.60 10.69 -35.23 -0.38 -4.98 16 3 C 0.11 1.14 6.06 36.00 0.22 1.36 16 4 C -0.11 -1.44 5.51 -104.56 -0.58 -2.02 16 5 C -0.10 -1.35 9.68 -39.63 -0.38 -1.74 16 6 C -0.11 -1.75 9.45 -39.25 -0.37 -2.12 16 7 C -0.02 -0.30 5.88 -104.90 -0.62 -0.91 16 8 C 0.01 0.23 5.90 -104.65 -0.62 -0.39 16 9 C -0.30 -6.16 9.52 -38.81 -0.37 -6.53 16 10 C 0.15 3.32 11.17 -17.60 -0.20 3.12 16 11 N -0.57 -14.55 4.54 -11.20 -0.05 -14.60 16 12 C 0.25 6.48 6.39 -85.02 -0.54 5.94 16 13 C -0.47 -12.83 9.58 -37.70 -0.36 -13.19 16 14 H 0.08 2.20 8.05 -52.49 -0.42 1.78 16 15 C 0.04 1.16 5.52 -17.34 -0.10 1.07 16 16 N -0.80 -21.90 13.65 55.55 0.76 -21.14 16 17 Si 1.16 28.50 25.56 -169.99 -4.34 24.15 16 18 H -0.33 -8.10 7.11 56.52 0.40 -7.70 16 19 H -0.28 -6.83 6.67 56.52 0.38 -6.45 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 21 C -0.24 -5.57 9.22 -38.34 -0.35 -5.93 16 22 C -0.11 -1.86 9.45 -39.25 -0.37 -2.23 16 23 C -0.10 -1.39 9.68 -39.63 -0.38 -1.77 16 24 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 28 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 29 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.13 1.80 6.29 -52.49 -0.33 1.47 16 31 H 0.11 1.83 6.32 -52.49 -0.33 1.50 16 32 H 0.13 2.37 8.06 -52.49 -0.42 1.95 16 33 H 0.28 7.36 8.72 -40.82 -0.36 7.01 16 34 H 0.11 2.35 6.33 -52.48 -0.33 2.02 16 35 H 0.13 2.06 6.29 -52.48 -0.33 1.73 16 36 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 306.11 15.07 4.61 4.61 Total: -1.00 -29.97 306.11 -7.61 -37.58 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -4.30 Total: -1.63 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -3.91 Total: -24.00 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.71 Total: -35.74 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.38 Total: -4.98 kcal Atomic # 14 Polarization: 28.50 SS G_CDS: -4.34 Total: 24.15 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.97 -7.61 -37.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240952386.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.798 kcal (2) G-P(sol) polarization free energy of solvation -29.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds