Wall clock time and date at job start Mon Mar 30 2020 00:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99596 * 2 1 4 4 C 1.50696 * 109.47032 * 180.02562 * 3 2 1 5 5 C 1.38326 * 119.88085 * 90.00100 * 4 3 2 6 6 C 1.38009 * 120.12130 * 179.97438 * 5 4 3 7 7 C 1.39348 * 119.88258 * 0.02562 * 6 5 4 8 8 C 1.48383 * 120.12351 * 180.02562 * 7 6 5 9 9 C 1.40036 * 120.82218 * 0.02562 * 8 7 6 10 10 C 1.38511 * 119.42395 * 179.97438 * 9 8 7 11 11 N 1.31478 * 121.14406 * 0.02562 * 10 9 8 12 12 C 1.33647 * 121.79298 * 359.97438 * 11 10 9 13 13 C 1.41426 * 119.77696 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99912 * 187.07025 * 13 12 11 15 15 C 1.40033 * 119.99947 * 7.07167 * 13 12 11 16 16 N 1.30741 * 120.00144 * 182.56910 * 15 13 12 17 17 Si 1.86809 * 120.00169 * 2.56807 * 15 13 12 18 18 H 1.48499 * 109.47093 * 179.97438 * 17 15 13 19 19 H 1.48495 * 109.46992 * 300.00230 * 17 15 13 20 20 H 1.48506 * 109.46797 * 59.99784 * 17 15 13 21 21 C 1.39302 * 120.82129 * 180.25959 * 8 7 6 22 22 C 1.39339 * 119.75254 * 0.27717 * 7 6 5 23 23 C 1.38022 * 119.88015 * 359.40140 * 22 7 6 24 24 H 1.09004 * 109.46817 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46875 * 299.99478 * 1 2 3 26 26 H 1.08993 * 109.47613 * 59.99575 * 1 2 3 27 27 H 1.09003 * 109.46701 * 60.00599 * 3 2 1 28 28 H 1.09000 * 109.47566 * 300.00402 * 3 2 1 29 29 H 1.08001 * 119.93523 * 0.02562 * 5 4 3 30 30 H 1.07999 * 120.06212 * 180.02562 * 6 5 4 31 31 H 1.07996 * 120.28944 * 359.97438 * 9 8 7 32 32 H 1.07998 * 119.42664 * 179.97438 * 10 9 8 33 33 H 0.96999 * 119.99741 * 354.84870 * 16 15 13 34 34 H 1.08005 * 120.58299 * 0.02562 * 21 8 7 35 35 H 1.08005 * 120.06092 * 179.72486 * 22 7 6 36 36 H 1.07992 * 119.94464 * 180.31827 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 -0.0006 5 6 4.1989 1.1325 -1.2003 6 6 5.5747 1.0241 -1.2067 7 6 6.2724 0.9687 -0.0017 8 6 7.7517 0.8528 -0.0023 9 6 8.4666 0.7980 -1.2052 10 6 9.8471 0.6903 -1.1719 11 7 10.4978 0.6381 -0.0307 12 6 9.8632 0.6866 1.1445 13 6 10.6058 0.6266 2.3467 14 1 10.0936 0.5502 3.2945 15 6 12.0050 0.6662 2.3081 16 7 12.6928 0.5602 3.4149 17 14 12.8890 0.8705 0.6751 18 1 14.3561 0.8826 0.9046 19 1 12.5371 -0.2586 -0.2228 20 1 12.4763 2.1507 0.0457 21 6 8.4632 0.7908 1.1937 22 6 5.5752 1.0173 1.2038 23 6 4.1998 1.1324 1.1986 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.6885 1.8463 0.8901 28 1 1.6885 1.8465 -0.8899 29 1 3.6573 1.1759 -2.1336 30 1 6.1098 0.9824 -2.1439 31 1 7.9461 0.8394 -2.1505 32 1 10.3985 0.6477 -2.0996 33 1 12.2348 0.5293 4.2694 34 1 7.9478 0.8259 2.1422 35 1 6.1106 0.9702 2.1407 36 1 3.6589 1.1753 2.1323 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240952386.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:30 Heat of formation + Delta-G solvation = -26.585838 kcal Electronic energy + Delta-G solvation = -18873.161568 eV Core-core repulsion = 15899.469386 eV Total energy + Delta-G solvation = -2973.692181 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.97756 -39.94760 -38.47446 -35.87338 -34.55166 -32.56531 -31.79360 -31.44849 -28.04711 -27.49399 -26.33090 -24.35383 -23.66057 -22.49553 -21.78667 -20.17981 -18.17448 -17.32921 -17.26852 -16.99029 -16.65736 -16.53274 -15.86041 -15.42661 -15.19085 -14.87061 -14.78327 -14.61010 -14.29632 -13.90825 -13.78219 -13.51352 -13.14810 -12.68621 -12.63716 -12.37161 -12.15338 -11.92131 -11.70817 -11.57401 -11.32165 -10.99899 -10.63842 -9.91941 -9.90029 -9.66523 -9.25832 -9.19784 -6.84757 -0.25500 0.45039 0.66752 1.08352 1.61794 1.73426 2.07529 2.48537 2.54503 2.78394 3.21302 3.59307 3.67531 3.79053 3.94777 3.95643 4.05863 4.21371 4.39739 4.43339 4.52550 4.54671 4.59041 4.59979 4.62256 4.82207 4.88357 4.90713 5.07245 5.15154 5.29881 5.35412 5.39354 5.45141 5.56683 5.69898 5.91024 6.00092 6.01245 6.22532 6.34511 6.63381 7.55800 7.94455 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.042401 B = 0.003693 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.199994 B = 7580.248712 C = 8118.566545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.105 3.895 4 C -0.100 4.100 5 C -0.099 4.099 6 C -0.110 4.110 7 C -0.054 4.054 8 C 0.018 3.982 9 C -0.280 4.280 10 C 0.134 3.866 11 N -0.595 5.595 12 C 0.237 3.763 13 C -0.513 4.513 14 H 0.062 0.938 15 C 0.014 3.986 16 N -0.832 5.832 17 Si 1.191 2.809 18 H -0.331 1.331 19 H -0.277 1.277 20 H -0.294 1.294 21 C -0.265 4.265 22 C -0.125 4.125 23 C -0.103 4.103 24 H 0.092 0.908 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.152 0.848 30 H 0.144 0.856 31 H 0.150 0.850 32 H 0.169 0.831 33 H 0.279 0.721 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.879 2.309 -9.577 23.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.029 3.971 4 C -0.100 4.100 5 C -0.117 4.117 6 C -0.128 4.128 7 C -0.054 4.054 8 C 0.011 3.989 9 C -0.302 4.302 10 C -0.025 4.025 11 N -0.315 5.315 12 C 0.113 3.887 13 C -0.546 4.546 14 H 0.080 0.920 15 C -0.202 4.202 16 N -0.455 5.455 17 Si 1.024 2.976 18 H -0.265 1.265 19 H -0.204 1.204 20 H -0.223 1.223 21 C -0.287 4.287 22 C -0.143 4.143 23 C -0.121 4.121 24 H 0.111 0.889 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.170 0.830 30 H 0.162 0.838 31 H 0.167 0.833 32 H 0.186 0.814 33 H 0.090 0.910 34 H 0.127 0.873 35 H 0.135 0.865 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -19.448 2.101 -10.064 21.998 hybrid contribution -2.286 0.096 1.730 2.868 sum -21.733 2.198 -8.335 23.380 Atomic orbital electron populations 1.22945 0.79268 1.03754 1.01174 1.87951 1.21574 1.28261 1.95656 1.21411 0.88194 0.84963 1.02516 1.19953 0.95407 1.01336 0.93310 1.21266 0.93433 0.98365 0.98586 1.21457 0.94611 0.99267 0.97449 1.19031 0.91145 1.00510 0.94714 1.19104 0.92133 0.94197 0.93420 1.21740 0.94557 1.16102 0.97832 1.22788 0.92621 0.91511 0.95584 1.66446 1.39709 1.26067 0.99279 1.18709 0.90817 0.88078 0.91136 1.20745 0.94311 1.46469 0.93047 0.91972 1.28607 0.96106 0.88062 1.07395 1.70675 1.40990 1.33736 1.00098 0.81329 0.68914 0.78753 0.68617 1.26517 1.20404 1.22274 1.21827 0.94177 1.14996 0.97676 1.21386 0.94962 1.00374 0.97624 1.21160 0.93126 0.98979 0.98823 0.88943 0.92978 0.92610 0.91092 0.90367 0.83008 0.83808 0.83279 0.81413 0.91006 0.87330 0.86499 0.84203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.54 16 2 O -0.41 -8.40 10.69 -148.98 -1.59 -9.99 16 3 C 0.10 1.80 6.06 71.23 0.43 2.23 16 4 C -0.10 -2.30 5.51 -19.82 -0.11 -2.41 16 5 C -0.10 -2.24 9.68 22.24 0.22 -2.02 16 6 C -0.11 -2.99 9.45 22.48 0.21 -2.77 16 7 C -0.05 -1.84 5.88 -20.04 -0.12 -1.95 16 8 C 0.02 0.72 5.90 -19.88 -0.12 0.60 16 9 C -0.28 -10.50 9.52 22.77 0.22 -10.28 16 10 C 0.13 5.50 11.17 84.81 0.95 6.45 16 11 N -0.60 -30.02 4.54 -189.36 -0.86 -30.88 16 12 C 0.24 12.69 6.39 40.20 0.26 12.95 16 13 C -0.51 -29.62 9.58 23.49 0.23 -29.40 16 14 H 0.06 3.66 8.05 -2.91 -0.02 3.63 16 15 C 0.01 0.81 5.52 85.29 0.47 1.28 16 16 N -0.83 -47.77 13.65 21.84 0.30 -47.47 16 17 Si 1.19 59.11 25.56 68.60 1.75 60.86 16 18 H -0.33 -16.08 7.11 99.48 0.71 -15.37 16 19 H -0.28 -13.41 6.67 99.48 0.66 -12.74 16 20 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 21 C -0.27 -12.66 9.22 23.07 0.21 -12.45 16 22 C -0.13 -4.01 9.45 22.48 0.21 -3.80 16 23 C -0.10 -2.67 9.68 22.24 0.22 -2.46 16 24 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.07 1.00 8.08 -2.39 -0.02 0.99 16 28 H 0.08 1.00 8.08 -2.39 -0.02 0.98 16 29 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 30 H 0.14 3.33 6.29 -2.91 -0.02 3.31 16 31 H 0.15 4.31 6.32 -2.91 -0.02 4.29 16 32 H 0.17 5.50 8.06 -2.91 -0.02 5.47 16 33 H 0.28 15.55 8.72 -92.71 -0.81 14.74 16 34 H 0.11 5.01 6.33 -2.91 -0.02 4.99 16 35 H 0.12 3.89 6.29 -2.91 -0.02 3.87 16 36 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -67.33 306.11 5.12 -62.21 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 1.00 Total: 7.75 kcal Atomic # 6 Polarization: -47.00 SS G_CDS: 4.52 Total: -42.48 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -0.56 Total: -78.35 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -1.59 Total: -9.99 kcal Atomic # 14 Polarization: 59.11 SS G_CDS: 1.75 Total: 60.86 kcal Total: -67.33 5.12 -62.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240952386.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.621 kcal (2) G-P(sol) polarization free energy of solvation -67.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds