Wall clock time and date at job start Mon Mar 30 2020 00:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35878 * 119.41867 * 2 1 4 4 C 1.35029 * 120.95620 * 180.02562 * 3 2 1 5 5 C 1.41301 * 119.78301 * 359.93423 * 4 3 2 6 6 C 1.48194 * 120.55812 * 180.02562 * 5 4 3 7 7 C 1.39446 * 120.13126 * 114.74466 * 6 5 4 8 8 C 1.37987 * 119.86736 * 179.69743 * 7 6 5 9 9 C 1.38346 * 120.12812 * 0.60392 * 8 7 6 10 10 C 1.50704 * 119.86489 * 179.69516 * 9 8 7 11 11 C 1.50702 * 109.46882 * 269.97807 * 10 9 8 12 12 H 1.07995 * 120.00595 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99696 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99883 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99797 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47335 * 59.99610 * 15 13 11 17 17 H 1.48504 * 109.46718 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46962 * 299.99302 * 15 13 11 19 19 C 1.38344 * 120.26837 * 359.67802 * 9 8 7 20 20 C 1.37988 * 120.12967 * 0.02562 * 19 9 8 21 21 C 1.38631 * 118.88696 * 0.06585 * 5 4 3 22 22 C 1.34572 * 119.41379 * 179.97438 * 2 1 3 23 23 O 1.22091 * 119.92576 * 0.02562 * 22 2 1 24 24 H 1.09000 * 109.46787 * 270.01938 * 1 2 3 25 25 H 1.09001 * 109.47035 * 30.01810 * 1 2 3 26 26 H 1.09002 * 109.47605 * 150.02012 * 1 2 3 27 27 H 1.08005 * 119.52151 * 359.97438 * 3 2 1 28 28 H 1.08001 * 120.11195 * 180.02562 * 4 3 2 29 29 H 1.08002 * 120.06614 * 359.97438 * 7 6 5 30 30 H 1.07995 * 119.93562 * 180.29677 * 8 7 6 31 31 H 1.08998 * 109.47239 * 29.97723 * 10 9 8 32 32 H 1.09002 * 109.46867 * 149.98216 * 10 9 8 33 33 H 0.96995 * 119.99589 * 180.02562 * 14 13 11 34 34 H 1.07994 * 119.93698 * 180.02562 * 19 9 8 35 35 H 1.07998 * 120.06755 * 180.02562 * 20 19 9 36 36 H 1.08005 * 120.47668 * 180.25103 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1324 1.1836 0.0000 4 6 3.4822 1.2198 -0.0005 5 6 4.2168 0.0127 0.0003 6 6 5.6986 0.0324 0.0004 7 6 6.4052 -0.4623 1.0960 8 6 7.7850 -0.4470 1.0876 9 6 8.4671 0.0692 0.0004 10 6 9.9740 0.0893 0.0004 11 6 10.4591 1.3838 0.6005 12 1 9.7475 2.1186 0.9468 13 6 11.8116 1.6303 0.7065 14 7 12.6782 0.7357 0.2843 15 14 12.4129 3.2345 1.4510 16 1 11.9168 3.3495 2.8459 17 1 13.8978 3.2548 1.4498 18 1 11.9022 4.3748 0.6484 19 6 7.7715 0.5668 -1.0871 20 6 6.3917 0.5513 -1.0928 21 6 3.5280 -1.1904 0.0003 22 6 2.1259 -1.1722 0.0005 23 8 1.5033 -2.2225 0.0005 24 1 -0.3633 0.0003 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3634 -0.8901 -0.5135 27 1 1.5752 2.1088 -0.0004 28 1 3.9988 2.1683 -0.0001 29 1 5.8737 -0.8607 1.9476 30 1 8.3333 -0.8342 1.9336 31 1 10.3485 -0.7474 0.5901 32 1 10.3385 0.0043 -1.0233 33 1 13.6296 0.9090 0.3592 34 1 8.3094 0.9682 -1.9331 35 1 5.8498 0.9396 -1.9424 36 1 4.0636 -2.1282 0.0050 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240986156.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:56 Heat of formation + Delta-G solvation = 11.789664 kcal Electronic energy + Delta-G solvation = -18792.752797 eV Core-core repulsion = 15820.724702 eV Total energy + Delta-G solvation = -2972.028095 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.33283 -38.80502 -36.92838 -35.13013 -33.24158 -31.26312 -30.45797 -29.89203 -28.22062 -26.49485 -24.13309 -23.49321 -22.02095 -21.92027 -20.07992 -17.62445 -17.36609 -16.64764 -16.34561 -16.15506 -15.37810 -14.79479 -14.59348 -14.25724 -14.24271 -13.56313 -13.38604 -13.01150 -12.90794 -12.60356 -12.38350 -12.08022 -11.88505 -11.63868 -11.34966 -11.22137 -10.81647 -10.61496 -10.35334 -10.04661 -9.91292 -9.59498 -9.48431 -8.46921 -8.40327 -8.10607 -7.80078 -6.08615 -4.13077 0.64153 1.66760 1.96787 1.99831 2.50871 3.28976 3.33508 3.36158 3.54745 4.25352 4.35727 4.44304 4.48785 4.65299 4.92259 5.03698 5.15466 5.25491 5.27016 5.33252 5.43648 5.45594 5.75036 5.88039 5.96229 6.06959 6.12166 6.30442 6.37627 6.54411 6.62138 6.92156 6.94856 7.08142 7.10111 7.43912 7.61212 7.77484 7.86732 7.94378 8.25729 8.91882 9.50959 11.01239 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.041736 B = 0.003349 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.720829 B = 8359.729285 C = 8677.662423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.504 5.504 3 C 0.122 3.878 4 C -0.209 4.209 5 C 0.077 3.923 6 C -0.107 4.107 7 C -0.097 4.097 8 C -0.125 4.125 9 C -0.020 4.020 10 C 0.045 3.955 11 C -0.514 4.514 12 H 0.057 0.943 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.125 4.125 20 C -0.097 4.097 21 C -0.242 4.242 22 C 0.514 3.486 23 O -0.562 6.562 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.162 0.838 28 H 0.148 0.852 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.030 0.970 32 H 0.030 0.970 33 H 0.263 0.737 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.911 2.492 -1.107 21.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.215 5.215 3 C -0.004 4.004 4 C -0.232 4.232 5 C 0.073 3.927 6 C -0.107 4.107 7 C -0.115 4.115 8 C -0.143 4.143 9 C -0.020 4.020 10 C 0.008 3.992 11 C -0.552 4.552 12 H 0.075 0.925 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.724 3.276 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.143 4.143 20 C -0.115 4.115 21 C -0.264 4.264 22 C 0.318 3.682 23 O -0.446 6.446 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.111 0.889 27 H 0.179 0.821 28 H 0.166 0.834 29 H 0.133 0.867 30 H 0.140 0.860 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -21.164 1.776 -1.125 21.268 hybrid contribution 0.499 1.060 0.446 1.254 sum -20.665 2.836 -0.679 20.870 Atomic orbital electron populations 1.22115 0.77627 1.04751 1.03689 1.45394 1.09090 1.06896 1.60159 1.21791 0.93691 0.89158 0.95784 1.20848 0.92088 0.99290 1.11011 1.19425 0.93105 0.92349 0.87801 1.18468 0.89966 1.05562 0.96730 1.21046 0.94240 0.99174 0.97006 1.21049 0.93149 1.01162 0.98927 1.20846 0.99151 0.90456 0.91580 1.18411 0.84399 0.97967 0.98436 1.20997 0.91502 1.01995 1.40731 0.92464 1.25017 0.96825 0.96970 0.95482 1.69945 1.01969 1.34566 1.46728 0.86579 0.77536 0.83657 0.79813 1.20133 1.21212 1.20143 1.21037 0.93085 1.00881 0.99312 1.20996 0.94286 0.99214 0.97028 1.22469 0.91980 0.99401 1.12526 1.16969 0.89165 0.82595 0.79465 1.90946 1.69617 1.29889 1.54178 0.90815 0.89862 0.88914 0.82081 0.83403 0.86749 0.86000 0.95159 0.95168 0.92708 0.86009 0.86741 0.83299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.41 10.34 59.85 0.62 1.03 16 2 N -0.50 -5.12 2.99 -127.38 -0.38 -5.50 16 3 C 0.12 0.97 10.25 -16.90 -0.17 0.80 16 4 C -0.21 -2.12 9.75 -39.56 -0.39 -2.51 16 5 C 0.08 1.01 5.35 -104.50 -0.56 0.45 16 6 C -0.11 -1.63 5.35 -104.91 -0.56 -2.20 16 7 C -0.10 -1.56 9.75 -39.22 -0.38 -1.95 16 8 C -0.12 -2.34 9.68 -39.63 -0.38 -2.72 16 9 C -0.02 -0.42 5.08 -104.54 -0.53 -0.95 16 10 C 0.04 1.12 5.10 -29.03 -0.15 0.97 16 11 C -0.51 -14.04 9.09 -34.44 -0.31 -14.35 16 12 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 15 Si 0.90 21.10 29.54 -169.99 -5.02 16.07 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 C -0.13 -2.31 9.68 -39.63 -0.38 -2.69 16 20 C -0.10 -1.53 9.75 -39.22 -0.38 -1.91 16 21 C -0.24 -3.40 9.75 -38.69 -0.38 -3.77 16 22 C 0.51 7.30 7.39 -15.61 -0.12 7.19 16 23 O -0.56 -9.79 16.61 4.84 0.08 -9.71 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.08 0.29 8.00 -51.93 -0.42 -0.13 16 26 H 0.09 0.76 7.37 -51.93 -0.38 0.38 16 27 H 0.16 0.59 8.02 -52.48 -0.42 0.17 16 28 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 31 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 32 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.12 2.18 8.06 -52.49 -0.42 1.75 16 35 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.15 2.14 8.06 -52.48 -0.42 1.71 16 LS Contribution 317.60 15.07 4.79 4.79 Total: -1.00 -32.72 317.60 -8.53 -41.25 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -4.56 Total: -0.59 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -4.17 Total: -21.09 kcal Atomic # 7 Polarization: -31.09 SS G_CDS: 0.36 Total: -30.73 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.72 -8.53 -41.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240986156.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.044 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds