Wall clock time and date at job start Mon Mar 30 2020 00:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35878 * 119.41867 * 2 1 4 4 C 1.35029 * 120.95620 * 180.02562 * 3 2 1 5 5 C 1.41301 * 119.78301 * 359.93423 * 4 3 2 6 6 C 1.48194 * 120.55812 * 180.02562 * 5 4 3 7 7 C 1.39446 * 120.13126 * 114.74466 * 6 5 4 8 8 C 1.37987 * 119.86736 * 179.69743 * 7 6 5 9 9 C 1.38346 * 120.12812 * 0.60392 * 8 7 6 10 10 C 1.50704 * 119.86489 * 179.69516 * 9 8 7 11 11 C 1.50702 * 109.46882 * 269.97807 * 10 9 8 12 12 H 1.07995 * 120.00595 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99696 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99883 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99797 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47335 * 59.99610 * 15 13 11 17 17 H 1.48504 * 109.46718 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46962 * 299.99302 * 15 13 11 19 19 C 1.38344 * 120.26837 * 359.67802 * 9 8 7 20 20 C 1.37988 * 120.12967 * 0.02562 * 19 9 8 21 21 C 1.38631 * 118.88696 * 0.06585 * 5 4 3 22 22 C 1.34572 * 119.41379 * 179.97438 * 2 1 3 23 23 O 1.22091 * 119.92576 * 0.02562 * 22 2 1 24 24 H 1.09000 * 109.46787 * 270.01938 * 1 2 3 25 25 H 1.09001 * 109.47035 * 30.01810 * 1 2 3 26 26 H 1.09002 * 109.47605 * 150.02012 * 1 2 3 27 27 H 1.08005 * 119.52151 * 359.97438 * 3 2 1 28 28 H 1.08001 * 120.11195 * 180.02562 * 4 3 2 29 29 H 1.08002 * 120.06614 * 359.97438 * 7 6 5 30 30 H 1.07995 * 119.93562 * 180.29677 * 8 7 6 31 31 H 1.08998 * 109.47239 * 29.97723 * 10 9 8 32 32 H 1.09002 * 109.46867 * 149.98216 * 10 9 8 33 33 H 0.96995 * 119.99589 * 180.02562 * 14 13 11 34 34 H 1.07994 * 119.93698 * 180.02562 * 19 9 8 35 35 H 1.07998 * 120.06755 * 180.02562 * 20 19 9 36 36 H 1.08005 * 120.47668 * 180.25103 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1324 1.1836 0.0000 4 6 3.4822 1.2198 -0.0005 5 6 4.2168 0.0127 0.0003 6 6 5.6986 0.0324 0.0004 7 6 6.4052 -0.4623 1.0960 8 6 7.7850 -0.4470 1.0876 9 6 8.4671 0.0692 0.0004 10 6 9.9740 0.0893 0.0004 11 6 10.4591 1.3838 0.6005 12 1 9.7475 2.1186 0.9468 13 6 11.8116 1.6303 0.7065 14 7 12.6782 0.7357 0.2843 15 14 12.4129 3.2345 1.4510 16 1 11.9168 3.3495 2.8459 17 1 13.8978 3.2548 1.4498 18 1 11.9022 4.3748 0.6484 19 6 7.7715 0.5668 -1.0871 20 6 6.3917 0.5513 -1.0928 21 6 3.5280 -1.1904 0.0003 22 6 2.1259 -1.1722 0.0005 23 8 1.5033 -2.2225 0.0005 24 1 -0.3633 0.0003 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3634 -0.8901 -0.5135 27 1 1.5752 2.1088 -0.0004 28 1 3.9988 2.1683 -0.0001 29 1 5.8737 -0.8607 1.9476 30 1 8.3333 -0.8342 1.9336 31 1 10.3485 -0.7474 0.5901 32 1 10.3385 0.0043 -1.0233 33 1 13.6296 0.9090 0.3592 34 1 8.3094 0.9682 -1.9331 35 1 5.8498 0.9396 -1.9424 36 1 4.0636 -2.1282 0.0050 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240986156.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:55 Heat of formation + Delta-G solvation = -6.573107 kcal Electronic energy + Delta-G solvation = -18793.549067 eV Core-core repulsion = 15820.724702 eV Total energy + Delta-G solvation = -2972.824364 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.24632 -40.17991 -37.97167 -36.28877 -35.06178 -32.79368 -31.82268 -30.86810 -29.53460 -27.73359 -25.53811 -24.61040 -23.39603 -23.25069 -21.47541 -18.54169 -18.44596 -18.27159 -17.65962 -17.00439 -16.84166 -16.22766 -16.02042 -15.79563 -15.10741 -14.66763 -14.49762 -14.26684 -14.18168 -13.86320 -13.63731 -13.34385 -13.14053 -12.98091 -12.76047 -12.65603 -12.51806 -12.37738 -11.85369 -11.57044 -11.45948 -11.07382 -10.83483 -10.59822 -9.78733 -9.32924 -8.97924 -8.19849 -6.33600 -0.29985 0.49952 0.57649 0.89937 1.41433 1.44067 1.52331 1.74562 2.40309 2.60049 2.93933 3.11210 3.45233 3.82627 3.86472 4.08001 4.15104 4.28084 4.31803 4.36792 4.47065 4.53622 4.65076 4.69690 4.79672 4.84313 5.08616 5.09621 5.18128 5.34914 5.35871 5.40240 5.52617 5.59663 5.65588 5.75048 6.05713 6.07194 6.08549 6.22017 6.79196 6.97302 7.35199 8.89427 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.041736 B = 0.003349 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.720829 B = 8359.729285 C = 8677.662423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.498 5.498 3 C 0.156 3.844 4 C -0.228 4.228 5 C 0.084 3.916 6 C -0.093 4.093 7 C -0.094 4.094 8 C -0.135 4.135 9 C -0.053 4.053 10 C 0.053 3.947 11 C -0.529 4.529 12 H 0.058 0.942 13 C 0.003 3.997 14 N -0.931 5.931 15 Si 0.967 3.033 16 H -0.268 1.268 17 H -0.283 1.283 18 H -0.265 1.265 19 C -0.133 4.133 20 C -0.086 4.086 21 C -0.272 4.272 22 C 0.503 3.497 23 O -0.611 6.611 24 H 0.086 0.914 25 H 0.129 0.871 26 H 0.072 0.928 27 H 0.222 0.778 28 H 0.169 0.831 29 H 0.135 0.865 30 H 0.116 0.884 31 H 0.002 0.998 32 H 0.005 0.995 33 H 0.266 0.734 34 H 0.121 0.879 35 H 0.148 0.852 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.930 5.701 -0.907 24.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.207 5.207 3 C 0.029 3.971 4 C -0.250 4.250 5 C 0.080 3.920 6 C -0.093 4.093 7 C -0.112 4.112 8 C -0.153 4.153 9 C -0.053 4.053 10 C 0.016 3.984 11 C -0.567 4.567 12 H 0.076 0.924 13 C -0.195 4.195 14 N -0.571 5.571 15 Si 0.791 3.209 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.190 1.190 19 C -0.151 4.151 20 C -0.104 4.104 21 C -0.294 4.294 22 C 0.308 3.692 23 O -0.499 6.499 24 H 0.104 0.896 25 H 0.148 0.852 26 H 0.091 0.909 27 H 0.238 0.762 28 H 0.187 0.813 29 H 0.153 0.847 30 H 0.134 0.866 31 H 0.020 0.980 32 H 0.023 0.977 33 H 0.074 0.926 34 H 0.139 0.861 35 H 0.166 0.834 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -24.208 5.010 -0.926 24.738 hybrid contribution 1.286 0.085 0.364 1.339 sum -22.922 5.094 -0.562 23.488 Atomic orbital electron populations 1.22435 0.75243 1.06100 1.04989 1.45544 1.10750 1.06522 1.57834 1.22646 0.93363 0.89919 0.91150 1.21070 0.93078 0.98589 1.12255 1.19381 0.91613 0.93414 0.87597 1.18741 0.91491 1.03255 0.95809 1.21226 0.93096 0.98660 0.98218 1.21026 0.94412 1.01584 0.98293 1.20526 0.96776 0.94045 0.93948 1.18147 0.87810 0.96338 0.96072 1.21350 0.91933 1.02783 1.40638 0.92411 1.25959 0.97010 1.00677 0.95841 1.70080 1.02300 1.36733 1.48015 0.85470 0.76992 0.79228 0.79208 1.19243 1.20785 1.18986 1.21071 0.94488 1.01032 0.98510 1.21243 0.92999 0.98169 0.97994 1.22281 0.92424 0.99260 1.15422 1.16973 0.89160 0.83320 0.79726 1.90912 1.70347 1.31772 1.56916 0.89554 0.85237 0.90893 0.76163 0.81336 0.84707 0.86632 0.97957 0.97674 0.92569 0.86121 0.83397 0.85133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.50 10.34 127.77 1.32 1.83 16 2 N -0.50 -8.28 2.99 -675.08 -2.02 -10.30 16 3 C 0.16 1.58 10.25 83.33 0.85 2.43 16 4 C -0.23 -3.54 9.75 22.28 0.22 -3.32 16 5 C 0.08 2.00 5.35 -19.78 -0.11 1.90 16 6 C -0.09 -2.67 5.35 -20.05 -0.11 -2.78 16 7 C -0.09 -2.99 9.75 22.50 0.22 -2.77 16 8 C -0.14 -5.21 9.68 22.24 0.22 -4.99 16 9 C -0.05 -2.29 5.08 -19.81 -0.10 -2.39 16 10 C 0.05 2.83 5.10 29.10 0.15 2.98 16 11 C -0.53 -29.81 9.09 25.60 0.23 -29.58 16 12 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 13 C 0.00 0.19 5.46 84.66 0.46 0.65 16 14 N -0.93 -55.94 13.29 21.45 0.28 -55.65 16 15 Si 0.97 43.54 29.54 68.60 2.03 45.57 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 18 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 19 C -0.13 -4.93 9.68 22.24 0.22 -4.72 16 20 C -0.09 -2.55 9.75 22.50 0.22 -2.33 16 21 C -0.27 -7.48 9.75 22.84 0.22 -7.25 16 22 C 0.50 13.77 7.39 84.75 0.63 14.40 16 23 O -0.61 -21.62 16.61 -5.61 -0.09 -21.71 16 24 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.13 0.07 8.00 -2.39 -0.02 0.06 16 26 H 0.07 1.06 7.37 -2.39 -0.02 1.04 16 27 H 0.22 -0.29 8.02 -2.91 -0.02 -0.32 16 28 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 29 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 30 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 31 H 0.00 0.12 8.08 -2.39 -0.02 0.10 16 32 H 0.00 0.28 8.08 -2.39 -0.02 0.26 16 33 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 34 H 0.12 4.40 8.06 -2.91 -0.02 4.37 16 35 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 36 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -76.43 317.60 5.91 -70.52 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 1.07 Total: 7.53 kcal Atomic # 6 Polarization: -40.59 SS G_CDS: 4.64 Total: -35.95 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: -1.73 Total: -65.95 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.09 Total: -21.71 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -76.43 5.91 -70.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240986156.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.945 kcal (2) G-P(sol) polarization free energy of solvation -76.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds