Wall clock time and date at job start Mon Mar 30 2020 00:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35890 * 119.41786 * 2 1 4 4 C 1.35033 * 120.95544 * 180.02562 * 3 2 1 5 5 C 1.41298 * 119.78225 * 359.97438 * 4 3 2 6 6 C 1.48197 * 120.55321 * 180.02562 * 5 4 3 7 7 C 1.39459 * 120.13350 * 65.02338 * 6 5 4 8 8 C 1.37971 * 119.86821 * 179.97438 * 7 6 5 9 9 C 1.38366 * 120.12932 * 359.74520 * 8 7 6 10 10 C 1.38318 * 120.26373 * 0.51071 * 9 8 7 11 11 C 1.50700 * 119.93306 * 179.76985 * 10 9 8 12 12 C 1.50706 * 109.47062 * 269.71780 * 11 10 9 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00434 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47364 * 179.72558 * 16 14 12 18 18 H 1.48508 * 109.46883 * 299.72681 * 16 14 12 19 19 H 1.48497 * 109.46870 * 59.72491 * 16 14 12 20 20 C 1.38011 * 120.13521 * 359.48852 * 10 9 8 21 21 C 1.38635 * 118.88813 * 0.27860 * 5 4 3 22 22 C 1.34571 * 119.42189 * 180.02562 * 2 1 3 23 23 O 1.22097 * 119.91741 * 0.02832 * 22 2 1 24 24 H 1.09003 * 109.47123 * 89.99950 * 1 2 3 25 25 H 1.09000 * 109.47384 * 210.00681 * 1 2 3 26 26 H 1.09006 * 109.47321 * 330.00456 * 1 2 3 27 27 H 1.08005 * 119.52450 * 359.97333 * 3 2 1 28 28 H 1.07994 * 120.10647 * 180.02562 * 4 3 2 29 29 H 1.08009 * 120.07027 * 359.95459 * 7 6 5 30 30 H 1.08004 * 119.93506 * 180.02562 * 8 7 6 31 31 H 1.08004 * 119.86788 * 180.25534 * 9 8 7 32 32 H 1.09004 * 109.47406 * 149.72486 * 11 10 9 33 33 H 1.08993 * 109.47274 * 29.72113 * 11 10 9 34 34 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 35 35 H 1.07996 * 120.07109 * 180.27937 * 20 10 9 36 36 H 1.08002 * 120.47658 * 179.72642 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1324 1.1837 0.0000 4 6 3.4823 1.2199 -0.0005 5 6 4.2168 0.0128 -0.0005 6 6 5.6986 0.0327 -0.0005 7 6 6.3918 0.5513 1.0928 8 6 7.7714 0.5665 1.0873 9 6 8.4672 0.0638 0.0020 10 6 7.7851 -0.4470 -1.0874 11 6 8.5504 -0.9878 -2.2676 12 6 8.7888 0.1193 -3.2619 13 1 8.4230 1.1151 -3.0592 14 6 9.4746 -0.1387 -4.4298 15 7 9.9254 -1.3498 -4.6737 16 14 9.7707 1.2339 -5.6619 17 1 10.5310 0.7026 -6.8216 18 1 8.4667 1.7700 -6.1284 19 1 10.5496 2.3201 -5.0150 20 6 6.4052 -0.4677 -1.0935 21 6 3.5280 -1.1903 -0.0059 22 6 2.1260 -1.1722 -0.0005 23 8 1.5034 -2.2224 -0.0015 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3634 0.8901 0.5138 27 1 1.5752 2.1089 -0.0004 28 1 3.9987 2.1684 -0.0001 29 1 5.8499 0.9405 1.9421 30 1 8.3094 0.9675 1.9336 31 1 9.5472 0.0741 0.0039 32 1 7.9743 -1.7831 -2.7408 33 1 9.5075 -1.3845 -1.9292 34 1 9.7720 -2.0625 -4.0339 35 1 5.8737 -0.8709 -1.9427 36 1 4.0636 -2.1281 -0.0105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240986448.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:58 Heat of formation + Delta-G solvation = 8.586990 kcal Electronic energy + Delta-G solvation = -19044.917919 eV Core-core repulsion = 16072.750946 eV Total energy + Delta-G solvation = -2972.166973 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.30199 -38.88265 -36.89509 -35.07352 -33.65216 -31.21485 -30.77066 -29.70045 -27.39316 -26.66815 -24.08171 -23.34789 -22.98361 -21.36830 -20.07616 -17.54926 -17.34208 -16.91983 -16.28693 -16.11082 -15.80320 -14.75003 -14.65943 -14.21344 -13.80801 -13.63608 -13.36797 -13.24720 -12.97099 -12.60011 -12.35811 -12.10444 -11.85997 -11.60247 -11.46421 -11.21938 -10.82712 -10.52636 -10.21813 -10.08185 -9.96808 -9.76390 -9.00891 -8.41230 -8.35345 -8.04764 -7.88544 -6.41298 -4.13030 0.66054 1.63562 1.92498 1.96220 2.54374 3.41614 3.43172 3.57807 3.62186 4.21571 4.38293 4.48019 4.53582 4.64290 4.96314 5.07190 5.17084 5.27030 5.32812 5.36354 5.39341 5.42252 5.72067 5.79863 5.90945 5.99809 6.08493 6.28757 6.37702 6.46327 6.56781 6.86490 6.92341 6.96726 6.99533 7.13697 7.49961 7.57504 7.98029 8.07680 8.39089 8.79937 9.58150 10.97768 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020825 B = 0.004232 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.191572 B = 6614.596193 C = 7084.133993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.503 5.503 3 C 0.122 3.878 4 C -0.208 4.208 5 C 0.071 3.929 6 C -0.075 4.075 7 C -0.125 4.125 8 C -0.122 4.122 9 C -0.114 4.114 10 C -0.028 4.028 11 C 0.034 3.966 12 C -0.594 4.594 13 H 0.051 0.949 14 C 0.017 3.983 15 N -0.910 5.910 16 Si 1.070 2.930 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.287 1.287 20 C -0.098 4.098 21 C -0.238 4.238 22 C 0.515 3.485 23 O -0.560 6.560 24 H 0.074 0.926 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.162 0.838 28 H 0.148 0.852 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.020 0.980 33 H 0.021 0.979 34 H 0.269 0.731 35 H 0.120 0.880 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.904 7.703 11.905 20.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.215 5.215 3 C -0.004 4.004 4 C -0.231 4.231 5 C 0.067 3.933 6 C -0.075 4.075 7 C -0.143 4.143 8 C -0.140 4.140 9 C -0.132 4.132 10 C -0.028 4.028 11 C -0.003 4.003 12 C -0.632 4.632 13 H 0.069 0.931 14 C -0.187 4.187 15 N -0.546 5.546 16 Si 0.898 3.102 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.213 1.213 20 C -0.116 4.116 21 C -0.259 4.259 22 C 0.318 3.682 23 O -0.444 6.444 24 H 0.093 0.907 25 H 0.111 0.889 26 H 0.101 0.899 27 H 0.180 0.820 28 H 0.166 0.834 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.080 0.920 35 H 0.138 0.862 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.661 7.358 10.435 19.441 hybrid contribution -0.635 -0.124 1.459 1.596 sum -15.296 7.235 11.894 20.682 Atomic orbital electron populations 1.22118 0.77582 1.04695 1.03779 1.45394 1.09116 1.06879 1.60115 1.21781 0.93639 0.89182 0.95748 1.20790 0.92117 0.99116 1.11105 1.19423 0.92976 0.92548 0.88320 1.18642 0.90206 1.02568 0.96102 1.20838 0.94119 1.01804 0.97576 1.20966 0.93863 1.00650 0.98492 1.21197 1.00090 0.98696 0.93255 1.20395 0.93265 0.93876 0.95253 1.18498 0.94325 0.96835 0.90620 1.21879 1.40254 0.95955 1.05104 0.93085 1.25881 0.93470 1.01011 0.98307 1.70788 1.43656 1.01495 1.38627 0.83527 0.76515 0.74314 0.75870 1.20678 1.21380 1.21350 1.21094 0.93984 0.99607 0.96951 1.22475 0.92078 0.99382 1.11968 1.16941 0.89113 0.82626 0.79471 1.90950 1.69570 1.29860 1.54025 0.90739 0.88912 0.89873 0.82024 0.83439 0.86720 0.86526 0.86278 0.96153 0.96099 0.92021 0.86192 0.83228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.45 10.34 59.85 0.62 1.07 16 2 N -0.50 -5.55 2.99 -127.38 -0.38 -5.93 16 3 C 0.12 1.07 10.25 -16.89 -0.17 0.90 16 4 C -0.21 -2.28 9.75 -39.56 -0.39 -2.67 16 5 C 0.07 1.01 5.35 -104.50 -0.56 0.45 16 6 C -0.08 -1.22 5.35 -104.91 -0.56 -1.79 16 7 C -0.13 -1.86 9.75 -39.22 -0.38 -2.25 16 8 C -0.12 -1.89 10.03 -39.63 -0.40 -2.29 16 9 C -0.11 -2.15 9.69 -39.51 -0.38 -2.53 16 10 C -0.03 -0.59 5.06 -104.68 -0.53 -1.12 16 11 C 0.03 0.86 4.41 -29.03 -0.13 0.73 16 12 C -0.59 -16.65 9.09 -34.44 -0.31 -16.96 16 13 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 14 C 0.02 0.49 5.46 -17.82 -0.10 0.40 16 15 N -0.91 -27.47 13.65 55.43 0.76 -26.72 16 16 Si 1.07 25.01 29.90 -169.99 -5.08 19.93 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 20 C -0.10 -1.91 9.39 -39.22 -0.37 -2.28 16 21 C -0.24 -3.63 9.74 -38.70 -0.38 -4.01 16 22 C 0.52 7.85 7.39 -15.61 -0.12 7.73 16 23 O -0.56 -10.30 16.61 4.83 0.08 -10.22 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.09 0.82 7.37 -51.93 -0.38 0.43 16 26 H 0.08 0.33 8.00 -51.93 -0.42 -0.09 16 27 H 0.16 0.69 8.03 -52.48 -0.42 0.27 16 28 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 30 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 31 H 0.12 2.18 8.06 -52.48 -0.42 1.75 16 32 H 0.02 0.54 7.96 -51.93 -0.41 0.12 16 33 H 0.02 0.54 7.94 -51.93 -0.41 0.13 16 34 H 0.27 8.08 7.22 -40.82 -0.29 7.78 16 35 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 36 H 0.15 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 316.29 15.07 4.77 4.77 Total: -1.00 -34.09 316.29 -8.51 -42.61 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -4.50 Total: 0.18 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -4.15 Total: -24.60 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 0.38 Total: -32.65 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.08 Total: -10.22 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.08 Total: 19.93 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.09 -8.51 -42.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240986448.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.194 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds