Wall clock time and date at job start Mon Mar 30 2020 00:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35890 * 119.41786 * 2 1 4 4 C 1.35033 * 120.95544 * 180.02562 * 3 2 1 5 5 C 1.41298 * 119.78225 * 359.97438 * 4 3 2 6 6 C 1.48197 * 120.55321 * 180.02562 * 5 4 3 7 7 C 1.39459 * 120.13350 * 65.02338 * 6 5 4 8 8 C 1.37971 * 119.86821 * 179.97438 * 7 6 5 9 9 C 1.38366 * 120.12932 * 359.74520 * 8 7 6 10 10 C 1.38318 * 120.26373 * 0.51071 * 9 8 7 11 11 C 1.50700 * 119.93306 * 179.76985 * 10 9 8 12 12 C 1.50706 * 109.47062 * 269.71780 * 11 10 9 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00434 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47364 * 179.72558 * 16 14 12 18 18 H 1.48508 * 109.46883 * 299.72681 * 16 14 12 19 19 H 1.48497 * 109.46870 * 59.72491 * 16 14 12 20 20 C 1.38011 * 120.13521 * 359.48852 * 10 9 8 21 21 C 1.38635 * 118.88813 * 0.27860 * 5 4 3 22 22 C 1.34571 * 119.42189 * 180.02562 * 2 1 3 23 23 O 1.22097 * 119.91741 * 0.02832 * 22 2 1 24 24 H 1.09003 * 109.47123 * 89.99950 * 1 2 3 25 25 H 1.09000 * 109.47384 * 210.00681 * 1 2 3 26 26 H 1.09006 * 109.47321 * 330.00456 * 1 2 3 27 27 H 1.08005 * 119.52450 * 359.97333 * 3 2 1 28 28 H 1.07994 * 120.10647 * 180.02562 * 4 3 2 29 29 H 1.08009 * 120.07027 * 359.95459 * 7 6 5 30 30 H 1.08004 * 119.93506 * 180.02562 * 8 7 6 31 31 H 1.08004 * 119.86788 * 180.25534 * 9 8 7 32 32 H 1.09004 * 109.47406 * 149.72486 * 11 10 9 33 33 H 1.08993 * 109.47274 * 29.72113 * 11 10 9 34 34 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 35 35 H 1.07996 * 120.07109 * 180.27937 * 20 10 9 36 36 H 1.08002 * 120.47658 * 179.72642 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1324 1.1837 0.0000 4 6 3.4823 1.2199 -0.0005 5 6 4.2168 0.0128 -0.0005 6 6 5.6986 0.0327 -0.0005 7 6 6.3918 0.5513 1.0928 8 6 7.7714 0.5665 1.0873 9 6 8.4672 0.0638 0.0020 10 6 7.7851 -0.4470 -1.0874 11 6 8.5504 -0.9878 -2.2676 12 6 8.7888 0.1193 -3.2619 13 1 8.4230 1.1151 -3.0592 14 6 9.4746 -0.1387 -4.4298 15 7 9.9254 -1.3498 -4.6737 16 14 9.7707 1.2339 -5.6619 17 1 10.5310 0.7026 -6.8216 18 1 8.4667 1.7700 -6.1284 19 1 10.5496 2.3201 -5.0150 20 6 6.4052 -0.4677 -1.0935 21 6 3.5280 -1.1903 -0.0059 22 6 2.1260 -1.1722 -0.0005 23 8 1.5034 -2.2224 -0.0015 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3634 0.8901 0.5138 27 1 1.5752 2.1089 -0.0004 28 1 3.9987 2.1684 -0.0001 29 1 5.8499 0.9405 1.9421 30 1 8.3094 0.9675 1.9336 31 1 9.5472 0.0741 0.0039 32 1 7.9743 -1.7831 -2.7408 33 1 9.5075 -1.3845 -1.9292 34 1 9.7720 -2.0625 -4.0339 35 1 5.8737 -0.8709 -1.9427 36 1 4.0636 -2.1281 -0.0105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240986448.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:57 Heat of formation + Delta-G solvation = -11.540976 kcal Electronic energy + Delta-G solvation = -19045.790734 eV Core-core repulsion = 16072.750946 eV Total energy + Delta-G solvation = -2973.039787 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.30050 -40.27824 -38.01945 -36.34699 -35.46186 -32.92053 -31.90772 -30.77975 -28.71744 -28.08361 -25.29767 -25.08818 -24.15591 -22.74629 -21.48126 -19.03578 -18.38307 -18.32368 -17.57383 -17.06877 -17.03694 -16.13677 -16.03552 -15.63915 -15.30864 -15.15915 -14.71912 -14.22091 -14.11127 -13.75865 -13.63799 -13.50280 -13.23678 -13.00585 -12.80223 -12.68097 -12.50409 -12.11156 -11.97004 -11.70931 -11.15865 -11.09038 -10.84833 -10.60335 -9.72848 -9.49264 -9.03469 -8.69895 -6.44681 -0.37376 0.40329 0.53341 0.84090 1.51271 1.59858 1.69750 1.79642 2.52695 2.55262 2.86031 3.11218 3.37420 3.77399 3.81755 4.02558 4.08288 4.22895 4.25532 4.27904 4.43984 4.49063 4.51581 4.61402 4.70109 4.79903 4.96212 4.96850 5.02251 5.15216 5.18984 5.32299 5.48918 5.52763 5.60258 5.87075 5.90208 6.01938 6.08340 6.11588 6.50313 6.91732 7.36519 8.67000 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020825 B = 0.004232 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.191572 B = 6614.596193 C = 7084.133993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.497 5.497 3 C 0.158 3.842 4 C -0.227 4.227 5 C 0.079 3.921 6 C -0.069 4.069 7 C -0.108 4.108 8 C -0.107 4.107 9 C -0.129 4.129 10 C -0.062 4.062 11 C 0.039 3.961 12 C -0.604 4.604 13 H 0.049 0.951 14 C -0.036 4.036 15 N -0.936 5.936 16 Si 1.119 2.881 17 H -0.282 1.282 18 H -0.269 1.269 19 H -0.265 1.265 20 C -0.118 4.118 21 C -0.277 4.277 22 C 0.504 3.496 23 O -0.610 6.610 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.134 0.866 27 H 0.227 0.773 28 H 0.174 0.826 29 H 0.158 0.842 30 H 0.159 0.841 31 H 0.116 0.884 32 H -0.008 1.008 33 H 0.002 0.998 34 H 0.255 0.745 35 H 0.098 0.902 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.902 12.163 13.689 24.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.206 5.206 3 C 0.031 3.969 4 C -0.249 4.249 5 C 0.074 3.926 6 C -0.069 4.069 7 C -0.126 4.126 8 C -0.124 4.124 9 C -0.147 4.147 10 C -0.062 4.062 11 C 0.002 3.998 12 C -0.641 4.641 13 H 0.068 0.932 14 C -0.233 4.233 15 N -0.573 5.573 16 Si 0.939 3.061 17 H -0.207 1.207 18 H -0.194 1.194 19 H -0.190 1.190 20 C -0.136 4.136 21 C -0.299 4.299 22 C 0.309 3.691 23 O -0.499 6.499 24 H 0.102 0.898 25 H 0.092 0.908 26 H 0.152 0.848 27 H 0.243 0.757 28 H 0.191 0.809 29 H 0.176 0.824 30 H 0.177 0.823 31 H 0.134 0.866 32 H 0.011 0.989 33 H 0.020 0.980 34 H 0.064 0.936 35 H 0.116 0.884 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.682 11.839 12.246 23.842 hybrid contribution -0.116 -1.450 1.007 1.769 sum -16.798 10.389 13.253 23.786 Atomic orbital electron populations 1.22457 0.75042 1.06294 1.04967 1.45545 1.10854 1.06448 1.57713 1.22722 0.93339 0.89972 0.90820 1.21072 0.93131 0.98383 1.12328 1.19483 0.91837 0.93627 0.87613 1.18835 0.91548 1.01170 0.95317 1.21333 0.94038 0.99555 0.97657 1.21365 0.94330 0.98655 0.98075 1.21265 1.00199 0.99460 0.93744 1.20090 0.93940 0.96921 0.95211 1.18289 0.93600 0.95694 0.92209 1.22218 1.39694 0.96414 1.05814 0.93234 1.27510 0.92805 1.02401 1.00626 1.70918 1.45486 1.02194 1.38667 0.82927 0.77498 0.72008 0.73648 1.20748 1.19447 1.19013 1.20950 0.93394 1.01189 0.98056 1.22259 0.92746 0.99173 1.15730 1.16903 0.88989 0.83472 0.79757 1.90908 1.70290 1.31803 1.56885 0.89762 0.90814 0.84821 0.75687 0.80862 0.82397 0.82330 0.86605 0.98948 0.98017 0.93574 0.88405 0.85858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.60 10.34 127.77 1.32 1.92 16 2 N -0.50 -9.46 2.99 -675.07 -2.02 -11.48 16 3 C 0.16 1.90 10.25 83.33 0.85 2.75 16 4 C -0.23 -4.00 9.75 22.28 0.22 -3.79 16 5 C 0.08 2.15 5.35 -19.78 -0.11 2.04 16 6 C -0.07 -2.18 5.35 -20.05 -0.11 -2.28 16 7 C -0.11 -2.84 9.75 22.50 0.22 -2.62 16 8 C -0.11 -2.99 10.03 22.24 0.22 -2.77 16 9 C -0.13 -4.84 9.69 22.32 0.22 -4.62 16 10 C -0.06 -2.77 5.06 -19.90 -0.10 -2.87 16 11 C 0.04 2.13 4.41 29.10 0.13 2.26 16 12 C -0.60 -35.24 9.09 25.60 0.23 -35.01 16 13 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 14 C -0.04 -2.12 5.46 84.65 0.46 -1.66 16 15 N -0.94 -58.98 13.65 21.45 0.29 -58.69 16 16 Si 1.12 50.49 29.90 68.60 2.05 52.55 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 19 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 20 C -0.12 -4.80 9.39 22.50 0.21 -4.59 16 21 C -0.28 -8.83 9.74 22.84 0.22 -8.61 16 22 C 0.50 15.49 7.39 84.75 0.63 16.12 16 23 O -0.61 -23.59 16.61 -5.63 -0.09 -23.68 16 24 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.07 1.19 7.37 -2.39 -0.02 1.17 16 26 H 0.13 0.21 8.00 -2.38 -0.02 0.19 16 27 H 0.23 -0.07 8.03 -2.91 -0.02 -0.09 16 28 H 0.17 2.22 8.06 -2.91 -0.02 2.19 16 29 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 30 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 31 H 0.12 4.32 8.06 -2.91 -0.02 4.29 16 32 H -0.01 -0.45 7.96 -2.39 -0.02 -0.47 16 33 H 0.00 0.09 7.94 -2.39 -0.02 0.07 16 34 H 0.25 16.33 7.22 -92.71 -0.67 15.66 16 35 H 0.10 4.28 8.06 -2.91 -0.02 4.26 16 36 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -82.58 316.29 6.03 -76.55 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: 1.17 Total: 8.48 kcal Atomic # 6 Polarization: -48.34 SS G_CDS: 4.62 Total: -43.72 kcal Atomic # 7 Polarization: -68.44 SS G_CDS: -1.72 Total: -70.17 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.09 Total: -23.68 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 2.05 Total: 52.55 kcal Total: -82.58 6.03 -76.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240986448.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.007 kcal (2) G-P(sol) polarization free energy of solvation -82.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds