Wall clock time and date at job start Mon Mar 30 2020 00:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35685 * 116.99778 * 2 1 4 4 C 1.37910 * 120.18825 * 359.97438 * 3 2 1 5 5 C 1.39724 * 119.92644 * 180.02562 * 4 3 2 6 6 C 1.47846 * 119.84304 * 180.02562 * 5 4 3 7 7 C 1.39584 * 120.18901 * 309.97331 * 6 5 4 8 8 C 1.37867 * 119.92340 * 180.02562 * 7 6 5 9 9 C 1.38540 * 120.32493 * 0.02562 * 8 7 6 10 10 C 1.38104 * 120.38484 * 359.97438 * 9 8 7 11 11 C 1.38793 * 120.06391 * 359.72361 * 10 9 8 12 12 N 1.39255 * 120.16095 * 180.27567 * 11 10 9 13 13 C 1.40161 * 120.30916 * 359.97438 * 5 4 3 14 14 C 1.36082 * 120.38102 * 359.97438 * 13 5 4 15 15 C 1.40928 * 120.06327 * 0.02562 * 14 13 5 16 16 C 1.40806 * 120.15176 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99936 * 149.94977 * 16 15 14 18 18 C 1.39956 * 120.00005 * 329.95830 * 16 15 14 19 19 N 1.30865 * 120.00413 * 161.81730 * 18 16 15 20 20 Si 1.86798 * 119.99970 * 341.81677 * 18 16 15 21 21 H 1.48503 * 109.47051 * 95.41204 * 20 18 16 22 22 H 1.48502 * 109.47584 * 215.41303 * 20 18 16 23 23 H 1.48506 * 109.47240 * 335.41487 * 20 18 16 24 24 H 1.09000 * 109.47144 * 299.99317 * 1 2 3 25 25 H 1.08996 * 109.47521 * 60.00109 * 1 2 3 26 26 H 1.09007 * 109.46687 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.03416 * 0.02562 * 4 3 2 28 28 H 1.07995 * 120.03257 * 0.02999 * 7 6 5 29 29 H 1.08010 * 119.83634 * 179.97438 * 8 7 6 30 30 H 1.08002 * 119.80192 * 179.97438 * 9 8 7 31 31 H 1.08008 * 119.96658 * 179.97438 * 10 9 8 32 32 H 0.97001 * 120.00585 * 180.27678 * 12 11 10 33 33 H 0.97004 * 120.00015 * 0.27573 * 12 11 10 34 34 H 1.07997 * 119.80841 * 180.27759 * 13 5 4 35 35 H 1.08005 * 119.96355 * 180.02562 * 14 13 5 36 36 H 0.97004 * 120.00348 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2976 2.3680 -0.0005 5 6 1.9376 3.6101 -0.0011 6 6 1.1346 4.8515 -0.0011 7 6 0.1022 5.0196 -0.9253 8 6 -0.6428 6.1797 -0.9208 9 6 -0.3719 7.1814 -0.0029 10 6 0.6465 7.0288 0.9174 11 6 1.4025 5.8649 0.9312 12 7 2.4261 5.7066 1.8620 13 6 3.3372 3.6847 -0.0005 14 6 4.0869 2.5490 0.0010 15 6 3.4580 1.2878 0.0016 16 6 4.2319 0.1115 0.0038 17 1 3.8518 -0.7841 0.4726 18 6 5.4938 0.1030 -0.6015 19 7 6.3542 -0.8382 -0.3075 20 14 5.9499 1.4351 -1.8290 21 1 6.6925 2.5164 -1.1328 22 1 6.8053 0.8542 -2.8949 23 1 4.7146 1.9938 -2.4350 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 0.2189 2.3157 -0.0005 28 1 -0.1127 4.2418 -1.6431 29 1 -1.4411 6.3085 -1.6369 30 1 -0.9606 8.0869 -0.0072 31 1 0.8521 7.8143 1.6296 32 1 2.9557 4.8939 1.8671 33 1 2.6096 6.4090 2.5054 34 1 3.8235 4.6490 0.0036 35 1 5.1650 2.6143 0.0019 36 1 7.2287 -0.8443 -0.7273 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241072750.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:00 Heat of formation + Delta-G solvation = 2.659945 kcal Electronic energy + Delta-G solvation = -19828.493642 eV Core-core repulsion = 16856.069653 eV Total energy + Delta-G solvation = -2972.423989 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.42359 -38.45436 -36.25393 -34.19980 -33.72966 -31.70590 -29.36569 -29.13616 -28.10690 -26.69943 -24.94511 -22.32228 -21.57790 -20.96481 -20.20379 -17.55985 -17.22810 -16.56456 -16.24539 -15.38019 -15.13319 -14.75360 -14.71574 -13.96106 -13.65145 -13.49208 -13.29110 -13.12113 -12.82911 -12.47375 -12.20922 -11.88443 -11.32694 -11.21585 -11.09294 -10.77547 -10.66142 -10.60044 -10.30895 -9.99978 -9.78340 -9.73927 -9.23740 -8.48669 -7.72201 -7.30665 -7.02083 -6.91469 -4.40206 1.65515 2.00717 2.54953 2.61735 3.07305 3.18720 3.29622 3.93742 4.21759 4.31081 4.34757 4.49221 5.23290 5.27896 5.35561 5.50604 5.67606 5.74240 5.80199 5.84658 5.89865 6.01224 6.06102 6.22496 6.36560 6.49214 6.62233 6.75811 6.84982 6.95449 6.99833 7.07232 7.24695 7.48093 7.51453 7.73598 7.91746 7.95038 8.16702 8.18816 8.32814 8.69874 8.79453 9.99466 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020928 B = 0.006187 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.576878 B = 4524.598709 C = 5267.335016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.308 6.308 3 C 0.029 3.971 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.074 4.074 7 C -0.079 4.079 8 C -0.181 4.181 9 C -0.093 4.093 10 C -0.204 4.204 11 C 0.216 3.784 12 N -0.876 5.876 13 C -0.090 4.090 14 C -0.224 4.224 15 C 0.083 3.917 16 C -0.419 4.419 17 H 0.097 0.903 18 C 0.081 3.919 19 N -0.800 5.800 20 Si 0.911 3.089 21 H -0.270 1.270 22 H -0.290 1.290 23 H -0.243 1.243 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.084 0.916 27 H 0.103 0.897 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.406 0.594 33 H 0.389 0.611 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.058 9.899 0.565 12.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.222 6.222 3 C -0.016 4.016 4 C -0.169 4.169 5 C -0.156 4.156 6 C -0.078 4.078 7 C -0.097 4.097 8 C -0.201 4.201 9 C -0.112 4.112 10 C -0.228 4.228 11 C 0.110 3.890 12 N -0.416 5.416 13 C -0.108 4.108 14 C -0.243 4.243 15 C 0.079 3.921 16 C -0.447 4.447 17 H 0.115 0.885 18 C -0.138 4.138 19 N -0.424 5.424 20 Si 0.737 3.263 21 H -0.196 1.196 22 H -0.217 1.217 23 H -0.166 1.166 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.121 0.879 28 H 0.134 0.866 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.238 0.762 33 H 0.216 0.784 34 H 0.115 0.885 35 H 0.125 0.875 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.733 9.496 0.543 12.258 hybrid contribution 0.347 0.629 -0.253 0.762 sum -7.386 10.125 0.290 12.536 Atomic orbital electron populations 1.22788 0.81330 1.02098 1.00092 1.86021 1.18506 1.27721 1.89964 1.18992 0.91976 0.82905 1.07696 1.20724 0.97626 0.91699 1.06821 1.17658 0.91817 0.90247 1.15905 1.18440 0.98475 0.94080 0.96841 1.21042 0.94625 0.96920 0.97162 1.20723 1.02435 0.95270 1.01705 1.20721 0.96874 0.98287 0.95290 1.20400 1.00784 0.97562 1.04012 1.17854 0.88790 0.93171 0.89149 1.42675 1.37986 1.23747 1.37163 1.20326 0.92652 0.96854 1.00982 1.20441 0.98152 0.91867 1.13891 1.17169 0.88529 0.93430 0.92965 1.19373 0.97934 0.98030 1.29323 0.88548 1.26227 0.94799 0.96284 0.96507 1.69706 1.05902 1.31545 1.35203 0.86305 0.79971 0.80052 0.79960 1.19572 1.21716 1.16573 0.94037 0.93951 0.89724 0.87863 0.86616 0.87180 0.87103 0.87047 0.76199 0.78357 0.88547 0.87540 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.81 101.05 0.99 1.53 16 2 O -0.31 -6.90 9.84 -18.76 -0.18 -7.08 16 3 C 0.03 0.68 6.71 -38.45 -0.26 0.42 16 4 C -0.15 -3.15 8.47 -39.15 -0.33 -3.48 16 5 C -0.15 -3.17 5.09 -104.69 -0.53 -3.71 16 6 C -0.07 -1.35 5.48 -104.69 -0.57 -1.92 16 7 C -0.08 -1.30 9.50 -39.22 -0.37 -1.68 16 8 C -0.18 -2.61 10.02 -39.61 -0.40 -3.01 16 9 C -0.09 -1.27 10.03 -39.52 -0.40 -1.66 16 10 C -0.20 -2.93 9.88 -39.43 -0.39 -3.32 16 11 C 0.22 3.52 6.67 -83.51 -0.56 2.97 16 12 N -0.88 -12.70 8.61 32.58 0.28 -12.42 16 13 C -0.09 -1.89 7.63 -39.63 -0.30 -2.19 16 14 C -0.22 -5.23 7.09 -39.34 -0.28 -5.51 16 15 C 0.08 2.08 5.11 -106.66 -0.55 1.54 16 16 C -0.42 -11.31 9.17 -37.97 -0.35 -11.66 16 17 H 0.10 2.79 7.89 -52.49 -0.41 2.38 16 18 C 0.08 2.11 5.40 -17.32 -0.09 2.01 16 19 N -0.80 -21.00 13.93 55.55 0.77 -20.23 16 20 Si 0.91 20.57 24.51 -169.99 -4.17 16.40 16 21 H -0.27 -5.84 6.71 56.52 0.38 -5.47 16 22 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.24 -5.68 6.87 56.52 0.39 -5.29 16 24 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16 25 H 0.04 0.64 7.66 -51.93 -0.40 0.25 16 26 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.10 1.95 6.26 -52.49 -0.33 1.63 16 28 H 0.12 1.85 8.04 -52.49 -0.42 1.43 16 29 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 30 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 31 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 32 H 0.41 6.43 5.99 -40.82 -0.24 6.18 16 33 H 0.39 4.42 8.84 -40.82 -0.36 4.06 16 34 H 0.10 1.86 7.48 -52.49 -0.39 1.47 16 35 H 0.11 2.46 4.73 -52.48 -0.25 2.22 16 36 H 0.29 6.79 8.30 -40.82 -0.34 6.45 16 LS Contribution 298.81 15.07 4.50 4.50 Total: -1.00 -28.31 298.81 -7.25 -35.56 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -4.07 Total: 12.94 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: -4.39 Total: -29.67 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 1.05 Total: -32.65 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.18 Total: -7.08 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.17 Total: 16.40 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.31 -7.25 -35.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241072750.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.222 kcal (2) G-P(sol) polarization free energy of solvation -28.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds