Wall clock time and date at job start Mon Mar 30 2020 00:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35685 * 116.99778 * 2 1 4 4 C 1.37910 * 120.18825 * 359.97438 * 3 2 1 5 5 C 1.39724 * 119.92644 * 180.02562 * 4 3 2 6 6 C 1.47846 * 119.84304 * 180.02562 * 5 4 3 7 7 C 1.39584 * 120.18901 * 309.97331 * 6 5 4 8 8 C 1.37867 * 119.92340 * 180.02562 * 7 6 5 9 9 C 1.38540 * 120.32493 * 0.02562 * 8 7 6 10 10 C 1.38104 * 120.38484 * 359.97438 * 9 8 7 11 11 C 1.38793 * 120.06391 * 359.72361 * 10 9 8 12 12 N 1.39255 * 120.16095 * 180.27567 * 11 10 9 13 13 C 1.40161 * 120.30916 * 359.97438 * 5 4 3 14 14 C 1.36082 * 120.38102 * 359.97438 * 13 5 4 15 15 C 1.40928 * 120.06327 * 0.02562 * 14 13 5 16 16 C 1.40806 * 120.15176 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99936 * 149.94977 * 16 15 14 18 18 C 1.39956 * 120.00005 * 329.95830 * 16 15 14 19 19 N 1.30865 * 120.00413 * 161.81730 * 18 16 15 20 20 Si 1.86798 * 119.99970 * 341.81677 * 18 16 15 21 21 H 1.48503 * 109.47051 * 95.41204 * 20 18 16 22 22 H 1.48502 * 109.47584 * 215.41303 * 20 18 16 23 23 H 1.48506 * 109.47240 * 335.41487 * 20 18 16 24 24 H 1.09000 * 109.47144 * 299.99317 * 1 2 3 25 25 H 1.08996 * 109.47521 * 60.00109 * 1 2 3 26 26 H 1.09007 * 109.46687 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.03416 * 0.02562 * 4 3 2 28 28 H 1.07995 * 120.03257 * 0.02999 * 7 6 5 29 29 H 1.08010 * 119.83634 * 179.97438 * 8 7 6 30 30 H 1.08002 * 119.80192 * 179.97438 * 9 8 7 31 31 H 1.08008 * 119.96658 * 179.97438 * 10 9 8 32 32 H 0.97001 * 120.00585 * 180.27678 * 12 11 10 33 33 H 0.97004 * 120.00015 * 0.27573 * 12 11 10 34 34 H 1.07997 * 119.80841 * 180.27759 * 13 5 4 35 35 H 1.08005 * 119.96355 * 180.02562 * 14 13 5 36 36 H 0.97004 * 120.00348 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2976 2.3680 -0.0005 5 6 1.9376 3.6101 -0.0011 6 6 1.1346 4.8515 -0.0011 7 6 0.1022 5.0196 -0.9253 8 6 -0.6428 6.1797 -0.9208 9 6 -0.3719 7.1814 -0.0029 10 6 0.6465 7.0288 0.9174 11 6 1.4025 5.8649 0.9312 12 7 2.4261 5.7066 1.8620 13 6 3.3372 3.6847 -0.0005 14 6 4.0869 2.5490 0.0010 15 6 3.4580 1.2878 0.0016 16 6 4.2319 0.1115 0.0038 17 1 3.8518 -0.7841 0.4726 18 6 5.4938 0.1030 -0.6015 19 7 6.3542 -0.8382 -0.3075 20 14 5.9499 1.4351 -1.8290 21 1 6.6925 2.5164 -1.1328 22 1 6.8053 0.8542 -2.8949 23 1 4.7146 1.9938 -2.4350 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 0.2189 2.3157 -0.0005 28 1 -0.1127 4.2418 -1.6431 29 1 -1.4411 6.3085 -1.6369 30 1 -0.9606 8.0869 -0.0072 31 1 0.8521 7.8143 1.6296 32 1 2.9557 4.8939 1.8671 33 1 2.6096 6.4090 2.5054 34 1 3.8235 4.6490 0.0036 35 1 5.1650 2.6143 0.0019 36 1 7.2287 -0.8443 -0.7273 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241072750.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:00 Heat of formation + Delta-G solvation = -14.672207 kcal Electronic energy + Delta-G solvation = -19829.245220 eV Core-core repulsion = 16856.069653 eV Total energy + Delta-G solvation = -2973.175568 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.93959 -39.88570 -37.91794 -35.69692 -35.20418 -33.30840 -30.88827 -30.76421 -29.34677 -28.16712 -26.59215 -23.80431 -22.95976 -22.53122 -21.72212 -19.42939 -18.71261 -17.78072 -17.58184 -17.02355 -16.66187 -16.31086 -16.19760 -15.67969 -15.09976 -14.78837 -14.71715 -14.58224 -14.28057 -13.93233 -13.75829 -13.51296 -12.91641 -12.79847 -12.61602 -12.32711 -12.24587 -11.96269 -11.64323 -11.57607 -11.47682 -11.38104 -11.02213 -9.89242 -9.30285 -8.98383 -8.89931 -8.21349 -6.34266 0.29134 0.80697 0.84073 0.97151 1.25353 1.40171 1.48231 2.11314 2.55104 2.79689 3.11785 3.17807 3.44413 4.02250 4.15534 4.19170 4.36342 4.38826 4.44795 4.45406 4.67048 4.70544 4.72017 4.78987 4.90023 5.06174 5.12712 5.24536 5.27356 5.47845 5.59402 5.72484 5.76294 5.86008 6.02094 6.14915 6.17201 6.30830 6.45588 6.71185 6.76978 7.05411 7.09334 8.18856 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020928 B = 0.006187 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.576878 B = 4524.598709 C = 5267.335016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.339 6.339 3 C 0.021 3.979 4 C -0.155 4.155 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.084 4.084 8 C -0.185 4.185 9 C -0.080 4.080 10 C -0.206 4.206 11 C 0.210 3.790 12 N -0.873 5.873 13 C -0.100 4.100 14 C -0.220 4.220 15 C 0.052 3.948 16 C -0.462 4.462 17 H 0.053 0.947 18 C 0.047 3.953 19 N -0.847 5.847 20 Si 0.963 3.037 21 H -0.253 1.253 22 H -0.277 1.277 23 H -0.257 1.257 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.111 0.889 27 H 0.127 0.873 28 H 0.115 0.885 29 H 0.136 0.864 30 H 0.146 0.854 31 H 0.139 0.861 32 H 0.399 0.601 33 H 0.405 0.595 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.402 14.042 0.211 17.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.254 6.254 3 C -0.024 4.024 4 C -0.174 4.174 5 C -0.121 4.121 6 C -0.124 4.124 7 C -0.102 4.102 8 C -0.205 4.205 9 C -0.099 4.099 10 C -0.228 4.228 11 C 0.104 3.896 12 N -0.413 5.413 13 C -0.118 4.118 14 C -0.240 4.240 15 C 0.050 3.950 16 C -0.491 4.491 17 H 0.071 0.929 18 C -0.167 4.167 19 N -0.474 5.474 20 Si 0.786 3.214 21 H -0.178 1.178 22 H -0.204 1.204 23 H -0.181 1.181 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.129 0.871 27 H 0.145 0.855 28 H 0.133 0.867 29 H 0.154 0.846 30 H 0.164 0.836 31 H 0.157 0.843 32 H 0.229 0.771 33 H 0.234 0.766 34 H 0.137 0.863 35 H 0.123 0.877 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.091 13.662 0.211 16.986 hybrid contribution 0.661 -0.353 -0.069 0.753 sum -9.429 13.309 0.142 16.311 Atomic orbital electron populations 1.23135 0.78289 1.04395 1.01222 1.85988 1.21768 1.27750 1.89908 1.19225 0.91900 0.84127 1.07130 1.21010 0.98818 0.91124 1.06409 1.18105 0.91978 0.91390 1.10632 1.18418 1.00260 0.93995 0.99729 1.21161 0.94264 0.97986 0.96825 1.21041 1.02582 0.94468 1.02359 1.21210 0.96041 0.99006 0.93628 1.20769 1.00244 0.97295 1.04536 1.18035 0.89230 0.93351 0.88999 1.42676 1.37402 1.23938 1.37264 1.20533 0.93080 0.96971 1.01224 1.20556 0.98441 0.91950 1.13008 1.17368 0.89658 0.93543 0.94472 1.19169 0.99684 0.97546 1.32724 0.92917 1.26803 0.94351 0.98131 0.97397 1.69735 1.06722 1.33661 1.37284 0.85525 0.79225 0.78296 0.78333 1.17800 1.20353 1.18109 0.92847 0.92565 0.87096 0.85489 0.86722 0.84591 0.83590 0.84334 0.77089 0.76554 0.86325 0.87655 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.78 9.81 113.37 1.11 1.89 16 2 O -0.34 -15.68 9.84 -90.04 -0.89 -16.56 16 3 C 0.02 1.01 6.71 23.00 0.15 1.16 16 4 C -0.15 -6.37 8.47 22.55 0.19 -6.18 16 5 C -0.12 -4.71 5.09 -19.91 -0.10 -4.81 16 6 C -0.12 -4.00 5.48 -19.91 -0.11 -4.11 16 7 C -0.08 -2.49 9.50 22.51 0.21 -2.28 16 8 C -0.18 -4.43 10.02 22.25 0.22 -4.21 16 9 C -0.08 -1.73 10.03 22.31 0.22 -1.51 16 10 C -0.21 -4.85 9.88 22.37 0.22 -4.63 16 11 C 0.21 6.10 6.67 38.59 0.26 6.36 16 12 N -0.87 -22.73 8.61 -50.85 -0.44 -23.17 16 13 C -0.10 -4.09 7.63 22.24 0.17 -3.92 16 14 C -0.22 -10.39 7.09 22.43 0.16 -10.23 16 15 C 0.05 2.76 5.11 -21.18 -0.11 2.65 16 16 C -0.46 -26.85 9.17 23.31 0.21 -26.63 16 17 H 0.05 3.38 7.89 -2.91 -0.02 3.36 16 18 C 0.05 2.60 5.40 85.25 0.46 3.06 16 19 N -0.85 -47.32 13.93 21.83 0.30 -47.02 16 20 Si 0.96 43.54 24.51 68.60 1.68 45.23 16 21 H -0.25 -10.60 6.71 99.48 0.67 -9.93 16 22 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 23 H -0.26 -12.05 6.87 99.48 0.68 -11.37 16 24 H 0.05 1.56 7.66 -2.39 -0.02 1.54 16 25 H 0.06 1.62 7.66 -2.39 -0.02 1.60 16 26 H 0.11 2.90 8.14 -2.38 -0.02 2.88 16 27 H 0.13 4.56 6.26 -2.91 -0.02 4.54 16 28 H 0.11 3.35 8.04 -2.91 -0.02 3.32 16 29 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 30 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 31 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 32 H 0.40 11.79 5.99 -92.71 -0.56 11.23 16 33 H 0.40 7.85 8.84 -92.71 -0.82 7.03 16 34 H 0.12 4.31 7.48 -2.91 -0.02 4.29 16 35 H 0.11 4.92 4.73 -2.91 -0.01 4.90 16 36 H 0.29 14.68 8.30 -92.71 -0.77 13.91 16 Total: -1.00 -65.15 298.81 3.63 -61.52 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: -0.31 Total: 33.41 kcal Atomic # 6 Polarization: -56.68 SS G_CDS: 3.28 Total: -53.40 kcal Atomic # 7 Polarization: -70.06 SS G_CDS: -0.13 Total: -70.19 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.89 Total: -16.56 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.68 Total: 45.23 kcal Total: -65.15 3.63 -61.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241072750.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.846 kcal (2) G-P(sol) polarization free energy of solvation -65.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds