Wall clock time and date at job start Mon Mar 30 2020 00:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35882 * 117.00147 * 2 1 4 4 C 1.39526 * 119.76599 * 359.97438 * 3 2 1 5 5 C 1.37860 * 120.63077 * 180.28285 * 4 3 2 6 6 C 1.39303 * 120.15563 * 359.49206 * 5 4 3 7 7 C 1.47647 * 120.22993 * 180.25603 * 6 5 4 8 8 C 1.39674 * 120.19752 * 65.25090 * 7 6 5 9 9 C 1.37851 * 119.91719 * 180.02562 * 8 7 6 10 10 C 1.38566 * 120.33194 * 0.02562 * 9 8 7 11 11 C 1.38132 * 120.40426 * 359.97438 * 10 9 8 12 12 C 1.38773 * 120.06923 * 359.72135 * 11 10 9 13 13 N 1.39248 * 120.16170 * 180.27473 * 12 11 10 14 14 C 1.41969 * 119.53237 * 0.50047 * 6 5 4 15 15 C 1.40836 * 120.30456 * 179.72979 * 14 6 5 16 16 H 1.08006 * 119.99899 * 25.22668 * 15 14 6 17 17 C 1.40005 * 120.00364 * 205.23106 * 15 14 6 18 18 N 1.30816 * 119.99647 * 17.31746 * 17 15 14 19 19 Si 1.86799 * 120.00247 * 197.31850 * 17 15 14 20 20 H 1.48490 * 109.47048 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46790 * 119.99926 * 19 17 15 22 22 H 1.48496 * 109.47172 * 239.99421 * 19 17 15 23 23 C 1.37862 * 119.76780 * 180.02562 * 3 2 1 24 24 H 1.08995 * 109.47290 * 300.00568 * 1 2 3 25 25 H 1.09006 * 109.46960 * 60.00648 * 1 2 3 26 26 H 1.08997 * 109.47211 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.68278 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.92485 * 179.72356 * 5 4 3 29 29 H 1.07997 * 120.04486 * 359.97438 * 8 7 6 30 30 H 1.07998 * 119.83435 * 179.97438 * 9 8 7 31 31 H 1.07995 * 119.79939 * 179.97438 * 10 9 8 32 32 H 1.07997 * 119.96034 * 179.97438 * 11 10 9 33 33 H 0.96996 * 119.99600 * 180.27881 * 13 12 11 34 34 H 0.96994 * 120.00189 * 0.27568 * 13 12 11 35 35 H 0.97007 * 119.99787 * 180.02562 * 18 17 15 36 36 H 1.08002 * 120.09133 * 359.95545 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2813 2.3778 -0.0005 5 6 1.8885 3.6154 -0.0064 6 6 3.2781 3.7131 -0.0012 7 6 3.9302 5.0377 -0.0018 8 6 3.7828 5.8938 1.0920 9 6 4.3937 7.1295 1.0851 10 6 5.1541 7.5282 -0.0026 11 6 5.3089 6.6923 -1.0913 12 6 4.7065 5.4422 -1.0994 13 7 4.8659 4.5958 -2.1935 14 6 4.0628 2.5299 -0.0006 15 6 5.4689 2.6097 -0.0011 16 1 5.9602 3.4854 0.3968 17 6 6.2299 1.5541 -0.5174 18 7 5.6696 0.6625 -1.2937 19 14 8.0451 1.4186 -0.0979 20 1 8.4331 2.5434 0.7905 21 1 8.2981 0.1298 0.5951 22 1 8.8472 1.4750 -1.3463 23 6 3.4229 1.2772 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 0.2033 2.3109 -0.0005 28 1 1.2856 4.5114 -0.0113 29 1 3.1902 5.5884 1.9416 30 1 4.2785 7.7906 1.9313 31 1 5.6286 8.4983 0.0010 32 1 5.9027 7.0105 -1.9354 33 1 4.4405 3.7241 -2.1984 34 1 5.4024 4.8778 -2.9508 35 1 6.1968 -0.0692 -1.6511 36 1 4.0089 0.3700 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241073025.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:02 Heat of formation + Delta-G solvation = -2.028660 kcal Electronic energy + Delta-G solvation = -20143.123481 eV Core-core repulsion = 17170.496178 eV Total energy + Delta-G solvation = -2972.627302 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.06227 -38.27776 -36.13725 -33.70048 -33.48674 -30.95634 -29.73273 -28.46446 -27.57807 -26.03787 -25.15883 -22.25313 -21.22439 -20.85860 -19.56359 -17.71617 -16.39120 -16.13121 -15.91238 -15.27114 -15.12456 -14.82091 -14.69353 -13.63919 -13.16319 -13.08891 -12.96428 -12.90083 -12.47878 -12.02567 -11.76725 -11.51273 -11.40088 -11.22877 -11.08013 -10.79364 -10.54393 -10.32831 -9.93620 -9.82142 -9.69667 -9.55406 -9.17644 -8.00073 -7.53178 -7.00330 -6.82868 -6.39823 -4.44025 2.14417 2.45923 2.71439 2.98346 3.05117 3.11546 3.17048 3.88860 4.30641 4.53881 4.70447 4.86889 5.50453 5.63216 5.65230 5.71401 5.77138 5.87948 5.90751 6.11039 6.22277 6.30146 6.38816 6.65121 6.77271 6.86938 6.99309 7.09218 7.20868 7.29747 7.40674 7.43103 7.64918 7.70611 7.83843 7.98935 8.04442 8.35242 8.46586 8.70752 8.75408 8.81391 8.90295 10.06977 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.012866 B = 0.009243 C = 0.005977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.750415 B = 3028.459302 C = 4683.180423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.330 6.330 3 C 0.131 3.869 4 C -0.319 4.319 5 C -0.043 4.043 6 C -0.197 4.197 7 C -0.060 4.060 8 C -0.078 4.078 9 C -0.194 4.194 10 C -0.092 4.092 11 C -0.218 4.218 12 C 0.241 3.759 13 N -0.857 5.857 14 C 0.148 3.852 15 C -0.435 4.435 16 H 0.083 0.917 17 C 0.078 3.922 18 N -0.781 5.781 19 Si 0.902 3.098 20 H -0.259 1.259 21 H -0.272 1.272 22 H -0.275 1.275 23 C -0.197 4.197 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.411 0.589 34 H 0.384 0.616 35 H 0.282 0.718 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.227 4.285 -0.229 4.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.245 6.245 3 C 0.087 3.913 4 C -0.339 4.339 5 C -0.061 4.061 6 C -0.198 4.198 7 C -0.065 4.065 8 C -0.097 4.097 9 C -0.214 4.214 10 C -0.110 4.110 11 C -0.241 4.241 12 C 0.133 3.867 13 N -0.393 5.393 14 C 0.145 3.855 15 C -0.463 4.463 16 H 0.101 0.899 17 C -0.141 4.141 18 N -0.405 5.405 19 Si 0.727 3.273 20 H -0.182 1.182 21 H -0.197 1.197 22 H -0.200 1.200 23 C -0.217 4.217 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.100 0.900 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.129 0.871 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.243 0.757 34 H 0.210 0.790 35 H 0.093 0.907 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.092 3.874 -0.372 4.418 hybrid contribution 0.631 -0.233 -0.171 0.694 sum -1.461 3.641 -0.544 3.960 Atomic orbital electron populations 1.22747 0.80825 1.01796 1.00501 1.86003 1.19463 1.29204 1.89812 1.19002 0.92469 0.82426 0.97409 1.20342 0.97249 0.92528 1.23754 1.20366 0.93457 0.95089 0.97211 1.18443 0.91825 0.91077 1.18474 1.18228 1.00550 0.94528 0.93169 1.21029 0.98552 0.93319 0.96840 1.20597 1.03964 0.97639 0.99198 1.20636 0.98519 0.98267 0.93624 1.20353 1.08001 0.95060 1.00708 1.17876 0.92144 0.88982 0.87670 1.42482 1.58095 1.20559 1.18192 1.17266 0.92718 0.88838 0.86689 1.19487 0.90866 1.02209 1.33779 0.89889 1.25947 1.01080 0.94374 0.92725 1.69839 1.38361 1.10864 1.21453 0.86333 0.82124 0.79456 0.79391 1.18234 1.19690 1.20043 1.20528 0.89326 0.99145 1.12673 0.93727 0.93699 0.89980 0.88765 0.89057 0.87130 0.87758 0.87667 0.87513 0.75746 0.79004 0.90749 0.85625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 9.80 101.05 0.99 1.59 16 2 O -0.33 -7.21 10.48 -19.37 -0.20 -7.41 16 3 C 0.13 3.11 6.67 -39.24 -0.26 2.85 16 4 C -0.32 -7.04 9.02 -39.24 -0.35 -7.39 16 5 C -0.04 -0.95 9.71 -39.32 -0.38 -1.33 16 6 C -0.20 -4.55 4.58 -104.23 -0.48 -5.03 16 7 C -0.06 -1.29 4.39 -104.71 -0.46 -1.75 16 8 C -0.08 -1.53 9.74 -39.19 -0.38 -1.91 16 9 C -0.19 -3.35 10.03 -39.60 -0.40 -3.75 16 10 C -0.09 -1.53 10.03 -39.50 -0.40 -1.93 16 11 C -0.22 -3.87 9.88 -39.42 -0.39 -4.26 16 12 C 0.24 4.82 6.04 -83.48 -0.50 4.32 16 13 N -0.86 -16.35 8.34 32.59 0.27 -16.08 16 14 C 0.15 3.70 4.71 -106.57 -0.50 3.20 16 15 C -0.43 -10.78 7.03 -37.94 -0.27 -11.05 16 16 H 0.08 2.12 7.07 -52.48 -0.37 1.75 16 17 C 0.08 1.86 5.14 -17.32 -0.09 1.77 16 18 N -0.78 -19.00 10.97 55.55 0.61 -18.39 16 19 Si 0.90 18.38 29.59 -169.99 -5.03 13.35 16 20 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 23 C -0.20 -5.05 8.60 -38.80 -0.33 -5.38 16 24 H 0.04 0.67 7.65 -51.93 -0.40 0.27 16 25 H 0.04 0.69 7.65 -51.93 -0.40 0.29 16 26 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.09 1.84 6.25 -52.49 -0.33 1.51 16 28 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 29 H 0.11 2.05 8.06 -52.49 -0.42 1.63 16 30 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.41 8.81 6.59 -40.82 -0.27 8.54 16 34 H 0.38 6.14 8.84 -40.82 -0.36 5.78 16 35 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 36 H 0.13 3.40 6.19 -52.49 -0.32 3.08 16 LS Contribution 303.04 15.07 4.57 4.57 Total: -1.00 -26.81 303.04 -8.11 -34.92 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -4.12 Total: 19.10 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: -4.20 Total: -30.06 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.88 Total: -34.47 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.20 Total: -7.41 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -26.81 -8.11 -34.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241073025.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.893 kcal (2) G-P(sol) polarization free energy of solvation -26.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds