Wall clock time and date at job start Mon Mar 30 2020 00:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35882 * 117.00147 * 2 1 4 4 C 1.39526 * 119.76599 * 359.97438 * 3 2 1 5 5 C 1.37860 * 120.63077 * 180.28285 * 4 3 2 6 6 C 1.39303 * 120.15563 * 359.49206 * 5 4 3 7 7 C 1.47647 * 120.22993 * 180.25603 * 6 5 4 8 8 C 1.39674 * 120.19752 * 65.25090 * 7 6 5 9 9 C 1.37851 * 119.91719 * 180.02562 * 8 7 6 10 10 C 1.38566 * 120.33194 * 0.02562 * 9 8 7 11 11 C 1.38132 * 120.40426 * 359.97438 * 10 9 8 12 12 C 1.38773 * 120.06923 * 359.72135 * 11 10 9 13 13 N 1.39248 * 120.16170 * 180.27473 * 12 11 10 14 14 C 1.41969 * 119.53237 * 0.50047 * 6 5 4 15 15 C 1.40836 * 120.30456 * 179.72979 * 14 6 5 16 16 H 1.08006 * 119.99899 * 25.22668 * 15 14 6 17 17 C 1.40005 * 120.00364 * 205.23106 * 15 14 6 18 18 N 1.30816 * 119.99647 * 17.31746 * 17 15 14 19 19 Si 1.86799 * 120.00247 * 197.31850 * 17 15 14 20 20 H 1.48490 * 109.47048 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46790 * 119.99926 * 19 17 15 22 22 H 1.48496 * 109.47172 * 239.99421 * 19 17 15 23 23 C 1.37862 * 119.76780 * 180.02562 * 3 2 1 24 24 H 1.08995 * 109.47290 * 300.00568 * 1 2 3 25 25 H 1.09006 * 109.46960 * 60.00648 * 1 2 3 26 26 H 1.08997 * 109.47211 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.68278 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.92485 * 179.72356 * 5 4 3 29 29 H 1.07997 * 120.04486 * 359.97438 * 8 7 6 30 30 H 1.07998 * 119.83435 * 179.97438 * 9 8 7 31 31 H 1.07995 * 119.79939 * 179.97438 * 10 9 8 32 32 H 1.07997 * 119.96034 * 179.97438 * 11 10 9 33 33 H 0.96996 * 119.99600 * 180.27881 * 13 12 11 34 34 H 0.96994 * 120.00189 * 0.27568 * 13 12 11 35 35 H 0.97007 * 119.99787 * 180.02562 * 18 17 15 36 36 H 1.08002 * 120.09133 * 359.95545 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2813 2.3778 -0.0005 5 6 1.8885 3.6154 -0.0064 6 6 3.2781 3.7131 -0.0012 7 6 3.9302 5.0377 -0.0018 8 6 3.7828 5.8938 1.0920 9 6 4.3937 7.1295 1.0851 10 6 5.1541 7.5282 -0.0026 11 6 5.3089 6.6923 -1.0913 12 6 4.7065 5.4422 -1.0994 13 7 4.8659 4.5958 -2.1935 14 6 4.0628 2.5299 -0.0006 15 6 5.4689 2.6097 -0.0011 16 1 5.9602 3.4854 0.3968 17 6 6.2299 1.5541 -0.5174 18 7 5.6696 0.6625 -1.2937 19 14 8.0451 1.4186 -0.0979 20 1 8.4331 2.5434 0.7905 21 1 8.2981 0.1298 0.5951 22 1 8.8472 1.4750 -1.3463 23 6 3.4229 1.2772 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 0.2033 2.3109 -0.0005 28 1 1.2856 4.5114 -0.0113 29 1 3.1902 5.5884 1.9416 30 1 4.2785 7.7906 1.9313 31 1 5.6286 8.4983 0.0010 32 1 5.9027 7.0105 -1.9354 33 1 4.4405 3.7241 -2.1984 34 1 5.4024 4.8778 -2.9508 35 1 6.1968 -0.0692 -1.6511 36 1 4.0089 0.3700 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241073025.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:02 Heat of formation + Delta-G solvation = -16.299466 kcal Electronic energy + Delta-G solvation = -20143.742309 eV Core-core repulsion = 17170.496178 eV Total energy + Delta-G solvation = -2973.246131 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.69068 -39.81402 -37.80284 -35.42831 -34.99248 -32.51501 -31.53146 -29.98791 -29.05250 -27.52636 -26.92499 -23.81594 -22.78962 -22.51505 -21.17379 -19.46365 -17.92775 -17.82249 -17.40859 -16.84718 -16.71588 -16.34626 -16.32166 -15.17223 -14.78961 -14.60148 -14.50539 -14.39174 -14.13666 -13.55286 -13.44650 -13.03507 -12.97916 -12.83041 -12.66661 -12.39026 -12.06447 -11.92430 -11.54715 -11.34351 -11.29258 -11.24106 -10.94795 -9.47131 -9.35788 -8.76483 -8.53173 -7.93466 -6.29557 0.65325 0.98359 1.01856 1.24186 1.37207 1.48836 1.50354 2.19353 2.71936 2.80722 3.24242 3.41705 3.72655 4.28017 4.31465 4.39581 4.46620 4.48237 4.53058 4.60373 4.74637 4.85109 4.89805 5.10576 5.17577 5.21645 5.34309 5.40648 5.57719 5.66479 5.85400 5.92832 5.94383 6.05933 6.16232 6.23901 6.35448 6.53937 6.92082 6.95815 6.99118 7.09502 7.28276 8.30912 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.012866 B = 0.009243 C = 0.005977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.750415 B = 3028.459302 C = 4683.180423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.125 3.875 4 C -0.317 4.317 5 C -0.051 4.051 6 C -0.195 4.195 7 C -0.096 4.096 8 C -0.090 4.090 9 C -0.193 4.193 10 C -0.085 4.085 11 C -0.220 4.220 12 C 0.223 3.777 13 N -0.858 5.858 14 C 0.130 3.870 15 C -0.448 4.448 16 H 0.069 0.931 17 C 0.046 3.954 18 N -0.807 5.807 19 Si 0.964 3.036 20 H -0.264 1.264 21 H -0.269 1.269 22 H -0.265 1.265 23 C -0.230 4.230 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.134 0.866 31 H 0.143 0.857 32 H 0.130 0.870 33 H 0.397 0.603 34 H 0.396 0.604 35 H 0.287 0.713 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.243 6.022 -0.059 6.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.267 6.267 3 C 0.081 3.919 4 C -0.336 4.336 5 C -0.070 4.070 6 C -0.196 4.196 7 C -0.100 4.100 8 C -0.109 4.109 9 C -0.213 4.213 10 C -0.104 4.104 11 C -0.243 4.243 12 C 0.116 3.884 13 N -0.394 5.394 14 C 0.128 3.872 15 C -0.477 4.477 16 H 0.087 0.913 17 C -0.171 4.171 18 N -0.432 5.432 19 Si 0.786 3.214 20 H -0.188 1.188 21 H -0.194 1.194 22 H -0.190 1.190 23 C -0.250 4.250 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.133 0.867 27 H 0.140 0.860 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.152 0.848 31 H 0.160 0.840 32 H 0.148 0.852 33 H 0.227 0.773 34 H 0.224 0.776 35 H 0.097 0.903 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.119 5.626 -0.211 6.015 hybrid contribution 0.509 -0.715 -0.210 0.902 sum -1.609 4.911 -0.422 5.185 Atomic orbital electron populations 1.23119 0.77759 1.04416 1.01400 1.85965 1.22662 1.28499 1.89603 1.19097 0.92234 0.83731 0.96846 1.20621 0.98570 0.91850 1.22581 1.20677 0.93500 0.95967 0.96835 1.18703 0.92333 0.91627 1.16953 1.18330 1.02512 0.94330 0.94857 1.21174 0.99127 0.94190 0.96397 1.20941 1.02976 0.96979 1.00374 1.21098 0.97352 0.99394 0.92536 1.20702 1.07501 0.94137 1.01949 1.18110 0.92644 0.90063 0.87626 1.42425 1.58370 1.19870 1.18735 1.17489 0.93266 0.89366 0.87123 1.19388 0.91076 1.02355 1.34899 0.91319 1.26557 1.04481 0.93813 0.92229 1.69892 1.39789 1.11415 1.22119 0.85419 0.77741 0.79031 0.79212 1.18803 1.19376 1.19002 1.20475 0.90427 0.98643 1.15498 0.92587 0.92856 0.86688 0.86023 0.87050 0.87096 0.84842 0.83952 0.85166 0.77349 0.77598 0.90251 0.88097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 9.80 113.37 1.11 1.95 16 2 O -0.35 -15.44 10.48 -92.22 -0.97 -16.41 16 3 C 0.13 6.06 6.67 22.49 0.15 6.21 16 4 C -0.32 -13.83 9.02 22.49 0.20 -13.62 16 5 C -0.05 -2.27 9.71 22.44 0.22 -2.05 16 6 C -0.19 -9.19 4.58 -19.61 -0.09 -9.28 16 7 C -0.10 -4.09 4.39 -19.92 -0.09 -4.18 16 8 C -0.09 -3.43 9.74 22.52 0.22 -3.21 16 9 C -0.19 -6.13 10.03 22.26 0.22 -5.91 16 10 C -0.09 -2.55 10.03 22.32 0.22 -2.33 16 11 C -0.22 -7.30 9.88 22.37 0.22 -7.07 16 12 C 0.22 8.81 6.04 38.62 0.23 9.05 16 13 N -0.86 -33.02 8.34 -50.80 -0.42 -33.45 16 14 C 0.13 6.78 4.71 -21.13 -0.10 6.68 16 15 C -0.45 -23.03 7.03 23.33 0.16 -22.86 16 16 H 0.07 3.64 7.07 -2.91 -0.02 3.62 16 17 C 0.05 2.25 5.14 85.27 0.44 2.69 16 18 N -0.81 -40.73 10.97 21.84 0.24 -40.49 16 19 Si 0.96 38.32 29.59 68.60 2.03 40.35 16 20 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 21 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 22 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 23 C -0.23 -12.34 8.60 22.77 0.20 -12.14 16 24 H 0.06 1.57 7.65 -2.39 -0.02 1.55 16 25 H 0.05 1.53 7.65 -2.38 -0.02 1.51 16 26 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 27 H 0.12 4.53 6.25 -2.91 -0.02 4.51 16 28 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 29 H 0.11 4.07 8.06 -2.91 -0.02 4.05 16 30 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 31 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 32 H 0.13 3.63 8.06 -2.91 -0.02 3.60 16 33 H 0.40 17.63 6.59 -92.71 -0.61 17.02 16 34 H 0.40 12.61 8.84 -92.71 -0.82 11.79 16 35 H 0.29 13.25 8.30 -92.70 -0.77 12.48 16 36 H 0.10 5.80 6.19 -2.91 -0.02 5.78 16 Total: -1.00 -59.44 303.04 3.90 -55.55 By element: Atomic # 1 Polarization: 50.82 SS G_CDS: -0.31 Total: 50.51 kcal Atomic # 6 Polarization: -59.40 SS G_CDS: 3.32 Total: -56.08 kcal Atomic # 7 Polarization: -73.75 SS G_CDS: -0.18 Total: -73.93 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.97 Total: -16.41 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Total: -59.44 3.90 -55.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241073025.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.249 kcal (2) G-P(sol) polarization free energy of solvation -59.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds