Wall clock time and date at job start Mon Mar 30 2020 00:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.46644 * 2 1 4 4 C 1.35908 * 116.99757 * 180.02562 * 3 2 1 5 5 C 1.38844 * 119.99637 * 359.97438 * 4 3 2 6 6 C 1.38211 * 120.20263 * 180.02562 * 5 4 3 7 7 C 1.38062 * 120.18290 * 359.97438 * 6 5 4 8 8 C 1.39381 * 119.98356 * 0.02562 * 7 6 5 9 9 C 1.48325 * 120.09678 * 180.02562 * 8 7 6 10 10 C 1.39891 * 119.60448 * 5.01522 * 9 8 7 11 11 C 1.38698 * 119.46298 * 179.97438 * 10 9 8 12 12 C 1.38291 * 118.68486 * 359.73135 * 11 10 9 13 13 C 1.40680 * 119.18710 * 0.53259 * 12 11 10 14 14 C 1.41381 * 119.76707 * 179.72467 * 13 12 11 15 15 H 1.08004 * 119.99986 * 0.38892 * 14 13 12 16 16 C 1.40017 * 120.00111 * 180.38755 * 14 13 12 17 17 N 1.30750 * 119.99864 * 177.25855 * 16 14 13 18 18 Si 1.86798 * 119.99869 * 356.97791 * 16 14 13 19 19 H 1.48502 * 109.47242 * 180.27372 * 18 16 14 20 20 H 1.48495 * 109.47302 * 300.27519 * 18 16 14 21 21 H 1.48504 * 109.47022 * 60.28002 * 18 16 14 22 22 N 1.32216 * 119.60408 * 185.00033 * 9 8 7 23 23 C 1.38491 * 119.99377 * 180.27762 * 4 3 2 24 24 H 1.08999 * 109.46904 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46990 * 299.99731 * 1 2 3 26 26 H 1.09000 * 109.47445 * 59.99889 * 1 2 3 27 27 H 1.09001 * 109.46566 * 240.00410 * 2 1 3 28 28 H 1.09000 * 109.47445 * 120.00111 * 2 1 3 29 29 H 1.08000 * 119.89481 * 0.02562 * 5 4 3 30 30 H 1.08001 * 119.90979 * 179.97438 * 6 5 4 31 31 H 1.07994 * 120.00543 * 179.97438 * 7 6 5 32 32 H 1.07998 * 120.26965 * 0.02562 * 10 9 8 33 33 H 1.07998 * 120.65803 * 180.02562 * 11 10 9 34 34 H 1.08001 * 120.40796 * 180.26049 * 12 11 10 35 35 H 0.96990 * 120.00083 * 354.18617 * 17 16 14 36 36 H 1.08000 * 120.09450 * 359.97290 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1993 0.4243 -0.0005 6 6 5.5702 0.6005 -0.0005 7 6 6.1065 1.8727 -0.0011 8 6 5.2646 2.9835 -0.0011 9 6 5.8381 4.3515 -0.0023 10 6 7.2226 4.5203 -0.1097 11 6 7.7556 5.8007 -0.1111 12 6 6.8946 6.8783 -0.0110 13 6 5.5120 6.6436 0.0999 14 6 4.6211 7.7361 0.2088 15 1 5.0023 8.7466 0.2002 16 6 3.2448 7.5080 0.3276 17 7 2.4261 8.5156 0.4821 18 14 2.5776 5.7646 0.2575 19 1 1.0997 5.7941 0.3999 20 1 2.9372 5.1489 -1.0450 21 1 3.1653 4.9649 1.3622 22 7 5.0345 5.3966 0.0979 23 6 3.8827 2.8052 0.0052 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 3.7847 -0.5729 -0.0005 30 1 6.2237 -0.2594 -0.0001 31 1 7.1780 2.0071 -0.0007 32 1 7.8711 3.6606 -0.1918 33 1 8.8216 5.9534 -0.1934 34 1 7.2793 7.8875 -0.0136 35 1 2.7771 9.4122 0.5990 36 1 3.2261 3.6627 0.0097 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241113474.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:22 Heat of formation + Delta-G solvation = 4.435853 kcal Electronic energy + Delta-G solvation = -19682.904891 eV Core-core repulsion = 16710.557911 eV Total energy + Delta-G solvation = -2972.346980 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.98090 -38.77599 -37.08036 -33.89924 -32.02962 -32.00403 -31.18319 -29.53346 -28.77328 -25.52540 -24.17498 -22.74456 -22.28829 -21.02485 -20.16499 -18.40622 -17.87065 -16.37316 -16.03126 -15.61150 -15.26289 -14.95078 -14.34591 -14.25065 -13.46746 -13.29083 -13.05214 -12.91845 -12.78748 -12.59563 -12.34565 -11.88250 -11.79721 -11.62219 -11.39605 -10.86341 -10.81630 -10.60704 -10.42101 -9.87433 -9.55864 -9.50108 -8.89654 -8.61412 -8.01497 -7.72124 -7.55122 -7.25839 -4.82718 1.23526 1.74491 2.56257 2.69730 3.32116 3.59391 3.66257 3.99946 4.09834 4.38839 4.67395 4.86795 4.86959 4.94016 5.11423 5.13991 5.25747 5.42238 5.50914 5.54551 5.70219 5.72435 5.80881 5.90371 5.99353 6.16567 6.20559 6.42460 6.47774 6.53889 6.63224 6.78909 6.96128 7.06174 7.23508 7.35041 7.43893 7.62109 7.65321 8.03216 8.24219 8.58481 9.37059 9.97838 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017084 B = 0.007375 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.592275 B = 3795.821340 C = 5409.369436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.316 6.316 4 C 0.121 3.879 5 C -0.212 4.212 6 C -0.089 4.089 7 C -0.140 4.140 8 C 0.010 3.990 9 C 0.203 3.797 10 C -0.292 4.292 11 C -0.047 4.047 12 C -0.256 4.256 13 C 0.252 3.748 14 C -0.471 4.471 15 H 0.084 0.916 16 C 0.041 3.959 17 N -0.802 5.802 18 Si 1.151 2.849 19 H -0.330 1.330 20 H -0.286 1.286 21 H -0.279 1.279 22 N -0.563 5.563 23 C -0.132 4.132 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.129 0.871 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.283 0.717 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.297 -15.563 -0.747 15.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.230 6.230 4 C 0.076 3.924 5 C -0.231 4.231 6 C -0.107 4.107 7 C -0.159 4.159 8 C 0.009 3.991 9 C 0.063 3.937 10 C -0.315 4.315 11 C -0.071 4.071 12 C -0.278 4.278 13 C 0.128 3.872 14 C -0.503 4.503 15 H 0.102 0.898 16 C -0.180 4.180 17 N -0.423 5.423 18 Si 0.988 3.012 19 H -0.264 1.264 20 H -0.215 1.215 21 H -0.208 1.208 22 N -0.282 5.282 23 C -0.151 4.151 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.147 0.853 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.095 0.905 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.129 -16.167 -0.673 16.221 hybrid contribution 2.622 1.087 -0.071 2.840 sum 1.493 -15.080 -0.744 15.172 Atomic orbital electron populations 1.21784 0.92919 1.02517 1.03825 1.22736 0.95801 0.82409 1.01103 1.86112 1.19207 1.28784 1.88899 1.18892 0.82166 0.93913 0.97392 1.21178 0.94448 0.97474 1.10001 1.20748 0.94102 0.96845 0.99003 1.21145 0.99920 0.91407 1.03403 1.18566 0.91767 0.91976 0.96774 1.19268 0.90031 0.90250 0.94104 1.21078 0.94226 0.96863 1.19381 1.20916 0.98018 0.92747 0.95387 1.21687 0.94231 0.97925 1.13993 1.18554 0.91121 0.89359 0.88151 1.20793 0.93400 0.93643 1.42443 0.89832 1.27864 0.93587 1.07897 0.88632 1.70653 1.39366 1.01958 1.30339 0.82184 0.70087 0.69606 0.79325 1.26385 1.21487 1.20824 1.66312 1.36946 0.99233 1.25675 1.21169 0.95440 0.95444 1.03046 0.90620 0.91378 0.91398 0.92237 0.92224 0.85866 0.85871 0.85305 0.87269 0.87569 0.87554 0.90535 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 37.16 0.38 -1.06 16 2 C 0.05 0.63 5.46 37.16 0.20 0.83 16 3 O -0.32 -5.31 10.13 -19.45 -0.20 -5.50 16 4 C 0.12 2.18 6.68 -39.26 -0.26 1.91 16 5 C -0.21 -3.08 9.03 -39.37 -0.36 -3.44 16 6 C -0.09 -1.24 10.03 -39.66 -0.40 -1.64 16 7 C -0.14 -2.31 9.41 -39.22 -0.37 -2.67 16 8 C 0.01 0.21 5.87 -104.91 -0.62 -0.41 16 9 C 0.20 4.75 6.73 -82.93 -0.56 4.20 16 10 C -0.29 -6.07 9.47 -38.79 -0.37 -6.44 16 11 C -0.05 -0.97 10.15 -39.39 -0.40 -1.37 16 12 C -0.26 -6.00 9.83 -38.64 -0.38 -6.38 16 13 C 0.25 6.69 6.43 -85.01 -0.55 6.15 16 14 C -0.47 -13.06 9.58 -37.72 -0.36 -13.42 16 15 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 16 C 0.04 1.16 5.52 -17.35 -0.10 1.06 16 17 N -0.80 -22.30 13.65 55.55 0.76 -21.54 16 18 Si 1.15 30.01 22.00 -169.99 -3.74 26.27 16 19 H -0.33 -8.50 7.11 56.52 0.40 -8.09 16 20 H -0.29 -7.45 6.62 56.52 0.37 -7.08 16 21 H -0.28 -7.28 6.32 56.52 0.36 -6.92 16 22 N -0.56 -14.82 4.18 -7.68 -0.03 -14.85 16 23 C -0.13 -2.83 9.22 -39.08 -0.36 -3.20 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 28 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 29 H 0.12 1.38 6.28 -52.49 -0.33 1.05 16 30 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.13 1.85 6.19 -52.49 -0.33 1.53 16 32 H 0.11 1.90 6.20 -52.49 -0.33 1.57 16 33 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.11 2.31 8.06 -52.49 -0.42 1.89 16 35 H 0.28 7.47 8.73 -40.82 -0.36 7.11 16 36 H 0.14 3.35 2.10 -52.49 -0.11 3.24 16 LS Contribution 295.18 15.07 4.45 4.45 Total: -1.00 -30.39 295.18 -7.32 -37.71 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -4.07 Total: -0.65 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: -4.48 Total: -25.88 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.73 Total: -36.39 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.20 Total: -5.50 kcal Atomic # 14 Polarization: 30.01 SS G_CDS: -3.74 Total: 26.27 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.39 -7.32 -37.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241113474.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.142 kcal (2) G-P(sol) polarization free energy of solvation -30.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds