Wall clock time and date at job start Mon Mar 30 2020 00:45:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 O 1.42898 * 109.46644 * 2 1
4 4 C 1.35908 * 116.99757 * 180.02562 * 3 2 1
5 5 C 1.38844 * 119.99637 * 359.97438 * 4 3 2
6 6 C 1.38211 * 120.20263 * 180.02562 * 5 4 3
7 7 C 1.38062 * 120.18290 * 359.97438 * 6 5 4
8 8 C 1.39381 * 119.98356 * 0.02562 * 7 6 5
9 9 C 1.48325 * 120.09678 * 180.02562 * 8 7 6
10 10 C 1.39891 * 119.60448 * 5.01522 * 9 8 7
11 11 C 1.38698 * 119.46298 * 179.97438 * 10 9 8
12 12 C 1.38291 * 118.68486 * 359.73135 * 11 10 9
13 13 C 1.40680 * 119.18710 * 0.53259 * 12 11 10
14 14 C 1.41381 * 119.76707 * 179.72467 * 13 12 11
15 15 H 1.08004 * 119.99986 * 0.38892 * 14 13 12
16 16 C 1.40017 * 120.00111 * 180.38755 * 14 13 12
17 17 N 1.30750 * 119.99864 * 177.25855 * 16 14 13
18 18 Si 1.86798 * 119.99869 * 356.97791 * 16 14 13
19 19 H 1.48502 * 109.47242 * 180.27372 * 18 16 14
20 20 H 1.48495 * 109.47302 * 300.27519 * 18 16 14
21 21 H 1.48504 * 109.47022 * 60.28002 * 18 16 14
22 22 N 1.32216 * 119.60408 * 185.00033 * 9 8 7
23 23 C 1.38491 * 119.99377 * 180.27762 * 4 3 2
24 24 H 1.08999 * 109.46904 * 180.02562 * 1 2 3
25 25 H 1.09007 * 109.46990 * 299.99731 * 1 2 3
26 26 H 1.09000 * 109.47445 * 59.99889 * 1 2 3
27 27 H 1.09001 * 109.46566 * 240.00410 * 2 1 3
28 28 H 1.09000 * 109.47445 * 120.00111 * 2 1 3
29 29 H 1.08000 * 119.89481 * 0.02562 * 5 4 3
30 30 H 1.08001 * 119.90979 * 179.97438 * 6 5 4
31 31 H 1.07994 * 120.00543 * 179.97438 * 7 6 5
32 32 H 1.07998 * 120.26965 * 0.02562 * 10 9 8
33 33 H 1.07998 * 120.65803 * 180.02562 * 11 10 9
34 34 H 1.08001 * 120.40796 * 180.26049 * 12 11 10
35 35 H 0.96990 * 120.00083 * 354.18617 * 17 16 14
36 36 H 1.08000 * 120.09450 * 359.97290 * 23 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0062 1.3473 0.0000
4 6 3.3536 1.5254 -0.0005
5 6 4.1993 0.4243 -0.0005
6 6 5.5702 0.6005 -0.0005
7 6 6.1065 1.8727 -0.0011
8 6 5.2646 2.9835 -0.0011
9 6 5.8381 4.3515 -0.0023
10 6 7.2226 4.5203 -0.1097
11 6 7.7556 5.8007 -0.1111
12 6 6.8946 6.8783 -0.0110
13 6 5.5120 6.6436 0.0999
14 6 4.6211 7.7361 0.2088
15 1 5.0023 8.7466 0.2002
16 6 3.2448 7.5080 0.3276
17 7 2.4261 8.5156 0.4821
18 14 2.5776 5.7646 0.2575
19 1 1.0997 5.7941 0.3999
20 1 2.9372 5.1489 -1.0450
21 1 3.1653 4.9649 1.3622
22 7 5.0345 5.3966 0.0979
23 6 3.8827 2.8052 0.0052
24 1 -0.3633 -1.0277 0.0005
25 1 -0.3633 0.5138 0.8901
26 1 -0.3634 0.5138 -0.8900
27 1 1.8933 -0.5138 -0.8901
28 1 1.8934 -0.5138 0.8900
29 1 3.7847 -0.5729 -0.0005
30 1 6.2237 -0.2594 -0.0001
31 1 7.1780 2.0071 -0.0007
32 1 7.8711 3.6606 -0.1918
33 1 8.8216 5.9534 -0.1934
34 1 7.2793 7.8875 -0.0136
35 1 2.7771 9.4122 0.5990
36 1 3.2261 3.6627 0.0097
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001241113474.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:45:22
Heat of formation + Delta-G solvation = 4.435853 kcal
Electronic energy + Delta-G solvation = -19682.904891 eV
Core-core repulsion = 16710.557911 eV
Total energy + Delta-G solvation = -2972.346980 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 269.116 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-39.98090 -38.77599 -37.08036 -33.89924 -32.02962 -32.00403 -31.18319 -29.53346
-28.77328 -25.52540 -24.17498 -22.74456 -22.28829 -21.02485 -20.16499 -18.40622
-17.87065 -16.37316 -16.03126 -15.61150 -15.26289 -14.95078 -14.34591 -14.25065
-13.46746 -13.29083 -13.05214 -12.91845 -12.78748 -12.59563 -12.34565 -11.88250
-11.79721 -11.62219 -11.39605 -10.86341 -10.81630 -10.60704 -10.42101 -9.87433
-9.55864 -9.50108 -8.89654 -8.61412 -8.01497 -7.72124 -7.55122 -7.25839
-4.82718 1.23526 1.74491 2.56257 2.69730 3.32116 3.59391 3.66257
3.99946 4.09834 4.38839 4.67395 4.86795 4.86959 4.94016 5.11423
5.13991 5.25747 5.42238 5.50914 5.54551 5.70219 5.72435 5.80881
5.90371 5.99353 6.16567 6.20559 6.42460 6.47774 6.53889 6.63224
6.78909 6.96128 7.06174 7.23508 7.35041 7.43893 7.62109 7.65321
8.03216 8.24219 8.58481 9.37059 9.97838
Molecular weight = 269.12amu
Principal moments of inertia in cm(-1)
A = 0.017084 B = 0.007375 C = 0.005175
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1638.592275 B = 3795.821340 C = 5409.369436
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.055 3.945
3 O -0.316 6.316
4 C 0.121 3.879
5 C -0.212 4.212
6 C -0.089 4.089
7 C -0.140 4.140
8 C 0.010 3.990
9 C 0.203 3.797
10 C -0.292 4.292
11 C -0.047 4.047
12 C -0.256 4.256
13 C 0.252 3.748
14 C -0.471 4.471
15 H 0.084 0.916
16 C 0.041 3.959
17 N -0.802 5.802
18 Si 1.151 2.849
19 H -0.330 1.330
20 H -0.286 1.286
21 H -0.279 1.279
22 N -0.563 5.563
23 C -0.132 4.132
24 H 0.075 0.925
25 H 0.067 0.933
26 H 0.067 0.933
27 H 0.059 0.941
28 H 0.060 0.940
29 H 0.123 0.877
30 H 0.123 0.877
31 H 0.129 0.871
32 H 0.109 0.891
33 H 0.106 0.894
34 H 0.106 0.894
35 H 0.283 0.717
36 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.297 -15.563 -0.747 15.635
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.020 4.020
3 O -0.230 6.230
4 C 0.076 3.924
5 C -0.231 4.231
6 C -0.107 4.107
7 C -0.159 4.159
8 C 0.009 3.991
9 C 0.063 3.937
10 C -0.315 4.315
11 C -0.071 4.071
12 C -0.278 4.278
13 C 0.128 3.872
14 C -0.503 4.503
15 H 0.102 0.898
16 C -0.180 4.180
17 N -0.423 5.423
18 Si 0.988 3.012
19 H -0.264 1.264
20 H -0.215 1.215
21 H -0.208 1.208
22 N -0.282 5.282
23 C -0.151 4.151
24 H 0.094 0.906
25 H 0.086 0.914
26 H 0.086 0.914
27 H 0.078 0.922
28 H 0.078 0.922
29 H 0.141 0.859
30 H 0.141 0.859
31 H 0.147 0.853
32 H 0.127 0.873
33 H 0.124 0.876
34 H 0.124 0.876
35 H 0.095 0.905
36 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges -1.129 -16.167 -0.673 16.221
hybrid contribution 2.622 1.087 -0.071 2.840
sum 1.493 -15.080 -0.744 15.172
Atomic orbital electron populations
1.21784 0.92919 1.02517 1.03825 1.22736 0.95801 0.82409 1.01103
1.86112 1.19207 1.28784 1.88899 1.18892 0.82166 0.93913 0.97392
1.21178 0.94448 0.97474 1.10001 1.20748 0.94102 0.96845 0.99003
1.21145 0.99920 0.91407 1.03403 1.18566 0.91767 0.91976 0.96774
1.19268 0.90031 0.90250 0.94104 1.21078 0.94226 0.96863 1.19381
1.20916 0.98018 0.92747 0.95387 1.21687 0.94231 0.97925 1.13993
1.18554 0.91121 0.89359 0.88151 1.20793 0.93400 0.93643 1.42443
0.89832 1.27864 0.93587 1.07897 0.88632 1.70653 1.39366 1.01958
1.30339 0.82184 0.70087 0.69606 0.79325 1.26385 1.21487 1.20824
1.66312 1.36946 0.99233 1.25675 1.21169 0.95440 0.95444 1.03046
0.90620 0.91378 0.91398 0.92237 0.92224 0.85866 0.85871 0.85305
0.87269 0.87569 0.87554 0.90535 0.84105
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.44 10.28 37.16 0.38 -1.06 16
2 C 0.05 0.63 5.46 37.16 0.20 0.83 16
3 O -0.32 -5.31 10.13 -19.45 -0.20 -5.50 16
4 C 0.12 2.18 6.68 -39.26 -0.26 1.91 16
5 C -0.21 -3.08 9.03 -39.37 -0.36 -3.44 16
6 C -0.09 -1.24 10.03 -39.66 -0.40 -1.64 16
7 C -0.14 -2.31 9.41 -39.22 -0.37 -2.67 16
8 C 0.01 0.21 5.87 -104.91 -0.62 -0.41 16
9 C 0.20 4.75 6.73 -82.93 -0.56 4.20 16
10 C -0.29 -6.07 9.47 -38.79 -0.37 -6.44 16
11 C -0.05 -0.97 10.15 -39.39 -0.40 -1.37 16
12 C -0.26 -6.00 9.83 -38.64 -0.38 -6.38 16
13 C 0.25 6.69 6.43 -85.01 -0.55 6.15 16
14 C -0.47 -13.06 9.58 -37.72 -0.36 -13.42 16
15 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16
16 C 0.04 1.16 5.52 -17.35 -0.10 1.06 16
17 N -0.80 -22.30 13.65 55.55 0.76 -21.54 16
18 Si 1.15 30.01 22.00 -169.99 -3.74 26.27 16
19 H -0.33 -8.50 7.11 56.52 0.40 -8.09 16
20 H -0.29 -7.45 6.62 56.52 0.37 -7.08 16
21 H -0.28 -7.28 6.32 56.52 0.36 -6.92 16
22 N -0.56 -14.82 4.18 -7.68 -0.03 -14.85 16
23 C -0.13 -2.83 9.22 -39.08 -0.36 -3.20 16
24 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16
25 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16
26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
27 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16
28 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16
29 H 0.12 1.38 6.28 -52.49 -0.33 1.05 16
30 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16
31 H 0.13 1.85 6.19 -52.49 -0.33 1.53 16
32 H 0.11 1.90 6.20 -52.49 -0.33 1.57 16
33 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16
34 H 0.11 2.31 8.06 -52.49 -0.42 1.89 16
35 H 0.28 7.47 8.73 -40.82 -0.36 7.11 16
36 H 0.14 3.35 2.10 -52.49 -0.11 3.24 16
LS Contribution 295.18 15.07 4.45 4.45
Total: -1.00 -30.39 295.18 -7.32 -37.71
By element:
Atomic # 1 Polarization: 3.42 SS G_CDS: -4.07 Total: -0.65 kcal
Atomic # 6 Polarization: -21.39 SS G_CDS: -4.48 Total: -25.88 kcal
Atomic # 7 Polarization: -37.12 SS G_CDS: 0.73 Total: -36.39 kcal
Atomic # 8 Polarization: -5.31 SS G_CDS: -0.20 Total: -5.50 kcal
Atomic # 14 Polarization: 30.01 SS G_CDS: -3.74 Total: 26.27 kcal
Total LS contribution 4.45 Total: 4.45 kcal
Total: -30.39 -7.32 -37.71 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001241113474.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.142 kcal
(2) G-P(sol) polarization free energy of solvation -30.389 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.753 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.706 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.436 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds