Wall clock time and date at job start Mon Mar 30 2020 00:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.46644 * 2 1 4 4 C 1.35908 * 116.99757 * 180.02562 * 3 2 1 5 5 C 1.38844 * 119.99637 * 359.97438 * 4 3 2 6 6 C 1.38211 * 120.20263 * 180.02562 * 5 4 3 7 7 C 1.38062 * 120.18290 * 359.97438 * 6 5 4 8 8 C 1.39381 * 119.98356 * 0.02562 * 7 6 5 9 9 C 1.48325 * 120.09678 * 180.02562 * 8 7 6 10 10 C 1.39891 * 119.60448 * 5.01522 * 9 8 7 11 11 C 1.38698 * 119.46298 * 179.97438 * 10 9 8 12 12 C 1.38291 * 118.68486 * 359.73135 * 11 10 9 13 13 C 1.40680 * 119.18710 * 0.53259 * 12 11 10 14 14 C 1.41381 * 119.76707 * 179.72467 * 13 12 11 15 15 H 1.08004 * 119.99986 * 0.38892 * 14 13 12 16 16 C 1.40017 * 120.00111 * 180.38755 * 14 13 12 17 17 N 1.30750 * 119.99864 * 177.25855 * 16 14 13 18 18 Si 1.86798 * 119.99869 * 356.97791 * 16 14 13 19 19 H 1.48502 * 109.47242 * 180.27372 * 18 16 14 20 20 H 1.48495 * 109.47302 * 300.27519 * 18 16 14 21 21 H 1.48504 * 109.47022 * 60.28002 * 18 16 14 22 22 N 1.32216 * 119.60408 * 185.00033 * 9 8 7 23 23 C 1.38491 * 119.99377 * 180.27762 * 4 3 2 24 24 H 1.08999 * 109.46904 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46990 * 299.99731 * 1 2 3 26 26 H 1.09000 * 109.47445 * 59.99889 * 1 2 3 27 27 H 1.09001 * 109.46566 * 240.00410 * 2 1 3 28 28 H 1.09000 * 109.47445 * 120.00111 * 2 1 3 29 29 H 1.08000 * 119.89481 * 0.02562 * 5 4 3 30 30 H 1.08001 * 119.90979 * 179.97438 * 6 5 4 31 31 H 1.07994 * 120.00543 * 179.97438 * 7 6 5 32 32 H 1.07998 * 120.26965 * 0.02562 * 10 9 8 33 33 H 1.07998 * 120.65803 * 180.02562 * 11 10 9 34 34 H 1.08001 * 120.40796 * 180.26049 * 12 11 10 35 35 H 0.96990 * 120.00083 * 354.18617 * 17 16 14 36 36 H 1.08000 * 120.09450 * 359.97290 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1993 0.4243 -0.0005 6 6 5.5702 0.6005 -0.0005 7 6 6.1065 1.8727 -0.0011 8 6 5.2646 2.9835 -0.0011 9 6 5.8381 4.3515 -0.0023 10 6 7.2226 4.5203 -0.1097 11 6 7.7556 5.8007 -0.1111 12 6 6.8946 6.8783 -0.0110 13 6 5.5120 6.6436 0.0999 14 6 4.6211 7.7361 0.2088 15 1 5.0023 8.7466 0.2002 16 6 3.2448 7.5080 0.3276 17 7 2.4261 8.5156 0.4821 18 14 2.5776 5.7646 0.2575 19 1 1.0997 5.7941 0.3999 20 1 2.9372 5.1489 -1.0450 21 1 3.1653 4.9649 1.3622 22 7 5.0345 5.3966 0.0979 23 6 3.8827 2.8052 0.0052 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 3.7847 -0.5729 -0.0005 30 1 6.2237 -0.2594 -0.0001 31 1 7.1780 2.0071 -0.0007 32 1 7.8711 3.6606 -0.1918 33 1 8.8216 5.9534 -0.1934 34 1 7.2793 7.8875 -0.0136 35 1 2.7771 9.4122 0.5990 36 1 3.2261 3.6627 0.0097 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241113474.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:22 Heat of formation + Delta-G solvation = -14.269145 kcal Electronic energy + Delta-G solvation = -19683.716001 eV Core-core repulsion = 16710.557911 eV Total energy + Delta-G solvation = -2973.158090 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.30285 -40.43165 -38.39189 -35.87310 -33.58904 -33.20214 -32.76533 -30.87590 -30.25584 -27.38348 -25.42934 -24.16596 -23.62015 -22.66170 -21.59597 -20.39992 -19.26103 -17.78951 -17.15225 -17.03415 -16.74380 -16.54618 -15.97869 -15.91182 -15.05542 -14.74717 -14.50318 -14.38811 -14.21542 -14.06053 -13.73376 -13.36867 -13.05536 -12.88725 -12.70325 -12.67288 -12.26476 -11.95598 -11.70257 -11.67270 -11.49312 -11.44775 -10.59576 -10.37228 -9.71793 -9.43317 -9.29650 -9.05210 -6.87182 -0.22197 0.47518 0.69801 1.07050 1.46871 1.58443 1.89574 2.25635 2.30461 2.51568 2.88570 3.44334 3.58235 3.85281 3.98944 4.08509 4.14796 4.22022 4.29138 4.38507 4.44388 4.53338 4.57831 4.65409 4.72149 4.81478 4.94869 4.97826 5.09861 5.20774 5.32217 5.34801 5.37490 5.43323 5.55663 5.65372 5.76359 5.87264 6.00233 6.33161 6.49811 6.58325 7.50398 7.90766 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017084 B = 0.007375 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.592275 B = 3795.821340 C = 5409.369436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.043 3.957 3 O -0.347 6.347 4 C 0.112 3.888 5 C -0.195 4.195 6 C -0.071 4.071 7 C -0.134 4.134 8 C -0.024 4.024 9 C 0.174 3.826 10 C -0.266 4.266 11 C -0.037 4.037 12 C -0.272 4.272 13 C 0.233 3.767 14 C -0.512 4.512 15 H 0.073 0.927 16 C 0.017 3.983 17 N -0.832 5.832 18 Si 1.192 2.808 19 H -0.337 1.337 20 H -0.299 1.299 21 H -0.291 1.291 22 N -0.590 5.590 23 C -0.180 4.180 24 H 0.109 0.891 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.165 0.835 30 H 0.176 0.824 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.117 0.883 35 H 0.284 0.716 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.315 -20.350 -1.015 20.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.031 4.031 3 O -0.262 6.262 4 C 0.067 3.933 5 C -0.214 4.214 6 C -0.088 4.088 7 C -0.153 4.153 8 C -0.025 4.025 9 C 0.037 3.963 10 C -0.288 4.288 11 C -0.061 4.061 12 C -0.294 4.294 13 C 0.108 3.892 14 C -0.545 4.545 15 H 0.091 0.909 16 C -0.199 4.199 17 N -0.456 5.456 18 Si 1.030 2.970 19 H -0.271 1.271 20 H -0.230 1.230 21 H -0.221 1.221 22 N -0.309 5.309 23 C -0.200 4.200 24 H 0.128 0.872 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.182 0.818 30 H 0.193 0.807 31 H 0.174 0.826 32 H 0.174 0.826 33 H 0.175 0.825 34 H 0.135 0.865 35 H 0.094 0.906 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.899 -20.982 -0.943 21.089 hybrid contribution 1.895 2.216 -0.022 2.916 sum 3.794 -18.766 -0.965 19.170 Atomic orbital electron populations 1.21852 0.91897 1.04396 1.02854 1.23166 0.96765 0.80312 1.02900 1.86094 1.19000 1.32292 1.88836 1.18988 0.83209 0.93703 0.97428 1.21661 0.94548 0.98028 1.07143 1.21341 0.94404 0.97376 0.95720 1.21454 1.00663 0.90975 1.02231 1.18691 0.92131 0.91944 0.99714 1.20030 0.91482 0.90896 0.93941 1.21701 0.93570 0.98645 1.14918 1.21475 1.00175 0.91613 0.92817 1.21911 0.93312 0.99804 1.14333 1.18795 0.92649 0.89391 0.88391 1.20752 0.93804 0.93828 1.46079 0.90907 1.28253 0.94207 1.08801 0.88683 1.70647 1.39384 1.02075 1.33463 0.81538 0.69132 0.68005 0.78290 1.27124 1.22970 1.22052 1.66125 1.38615 0.99881 1.26313 1.21095 0.95925 0.96166 1.06780 0.87215 0.92437 0.92373 0.90219 0.90292 0.81776 0.80670 0.82606 0.82555 0.82507 0.86494 0.90556 0.87839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 10.28 71.98 0.74 -1.88 16 2 C 0.04 0.86 5.46 71.98 0.39 1.25 16 3 O -0.35 -11.54 10.13 -92.51 -0.94 -12.48 16 4 C 0.11 3.88 6.68 22.48 0.15 4.03 16 5 C -0.20 -4.77 9.03 22.41 0.20 -4.56 16 6 C -0.07 -1.55 10.03 22.22 0.22 -1.33 16 7 C -0.13 -3.82 9.41 22.50 0.21 -3.61 16 8 C -0.02 -0.97 5.87 -20.05 -0.12 -1.08 16 9 C 0.17 8.01 6.73 42.17 0.28 8.30 16 10 C -0.27 -10.04 9.47 22.78 0.22 -9.82 16 11 C -0.04 -1.40 10.15 22.39 0.23 -1.17 16 12 C -0.27 -12.57 9.83 22.88 0.22 -12.34 16 13 C 0.23 12.81 6.43 40.26 0.26 13.07 16 14 C -0.51 -30.19 9.58 23.48 0.22 -29.97 16 15 H 0.07 4.27 8.06 -2.91 -0.02 4.25 16 16 C 0.02 1.03 5.52 85.29 0.47 1.50 16 17 N -0.83 -49.40 13.65 21.84 0.30 -49.11 16 18 Si 1.19 66.48 22.00 68.60 1.51 67.99 16 19 H -0.34 -18.47 7.11 99.48 0.71 -17.76 16 20 H -0.30 -16.93 6.62 99.48 0.66 -16.27 16 21 H -0.29 -16.36 6.32 99.48 0.63 -15.73 16 22 N -0.59 -32.01 4.18 -178.20 -0.75 -32.76 16 23 C -0.18 -7.89 9.22 22.59 0.21 -7.68 16 24 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.08 1.28 7.66 -2.39 -0.02 1.26 16 28 H 0.08 1.28 7.66 -2.39 -0.02 1.26 16 29 H 0.16 2.63 6.28 -2.91 -0.02 2.61 16 30 H 0.18 2.12 8.06 -2.91 -0.02 2.09 16 31 H 0.16 3.45 6.19 -2.91 -0.02 3.43 16 32 H 0.16 4.39 6.20 -2.91 -0.02 4.37 16 33 H 0.16 4.35 8.06 -2.91 -0.02 4.33 16 34 H 0.12 5.04 8.06 -2.91 -0.02 5.01 16 35 H 0.28 16.05 8.73 -92.72 -0.81 15.24 16 36 H 0.10 5.23 2.10 -2.91 -0.01 5.23 16 Total: -1.00 -74.05 295.18 4.98 -69.07 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: 0.94 Total: 2.56 kcal Atomic # 6 Polarization: -49.20 SS G_CDS: 3.92 Total: -45.28 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -0.45 Total: -81.86 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -0.94 Total: -12.48 kcal Atomic # 14 Polarization: 66.48 SS G_CDS: 1.51 Total: 67.99 kcal Total: -74.05 4.98 -69.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241113474.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.805 kcal (2) G-P(sol) polarization free energy of solvation -74.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds