Wall clock time and date at job start Mon Mar 30 2020 00:45:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 O 1.42898 * 109.46644 * 2 1
4 4 C 1.35908 * 116.99757 * 180.02562 * 3 2 1
5 5 C 1.38844 * 119.99637 * 359.97438 * 4 3 2
6 6 C 1.38211 * 120.20263 * 180.02562 * 5 4 3
7 7 C 1.38062 * 120.18290 * 359.97438 * 6 5 4
8 8 C 1.39381 * 119.98356 * 0.02562 * 7 6 5
9 9 C 1.48325 * 120.09678 * 180.02562 * 8 7 6
10 10 C 1.39891 * 119.60448 * 5.01522 * 9 8 7
11 11 C 1.38698 * 119.46298 * 179.97438 * 10 9 8
12 12 C 1.38291 * 118.68486 * 359.73135 * 11 10 9
13 13 C 1.40680 * 119.18710 * 0.53259 * 12 11 10
14 14 C 1.41381 * 119.76707 * 179.72467 * 13 12 11
15 15 H 1.08004 * 119.99986 * 0.38892 * 14 13 12
16 16 C 1.40017 * 120.00111 * 180.38755 * 14 13 12
17 17 N 1.30750 * 119.99864 * 177.25855 * 16 14 13
18 18 Si 1.86798 * 119.99869 * 356.97791 * 16 14 13
19 19 H 1.48502 * 109.47242 * 180.27372 * 18 16 14
20 20 H 1.48495 * 109.47302 * 300.27519 * 18 16 14
21 21 H 1.48504 * 109.47022 * 60.28002 * 18 16 14
22 22 N 1.32216 * 119.60408 * 185.00033 * 9 8 7
23 23 C 1.38491 * 119.99377 * 180.27762 * 4 3 2
24 24 H 1.08999 * 109.46904 * 180.02562 * 1 2 3
25 25 H 1.09007 * 109.46990 * 299.99731 * 1 2 3
26 26 H 1.09000 * 109.47445 * 59.99889 * 1 2 3
27 27 H 1.09001 * 109.46566 * 240.00410 * 2 1 3
28 28 H 1.09000 * 109.47445 * 120.00111 * 2 1 3
29 29 H 1.08000 * 119.89481 * 0.02562 * 5 4 3
30 30 H 1.08001 * 119.90979 * 179.97438 * 6 5 4
31 31 H 1.07994 * 120.00543 * 179.97438 * 7 6 5
32 32 H 1.07998 * 120.26965 * 0.02562 * 10 9 8
33 33 H 1.07998 * 120.65803 * 180.02562 * 11 10 9
34 34 H 1.08001 * 120.40796 * 180.26049 * 12 11 10
35 35 H 0.96990 * 120.00083 * 354.18617 * 17 16 14
36 36 H 1.08000 * 120.09450 * 359.97290 * 23 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0062 1.3473 0.0000
4 6 3.3536 1.5254 -0.0005
5 6 4.1993 0.4243 -0.0005
6 6 5.5702 0.6005 -0.0005
7 6 6.1065 1.8727 -0.0011
8 6 5.2646 2.9835 -0.0011
9 6 5.8381 4.3515 -0.0023
10 6 7.2226 4.5203 -0.1097
11 6 7.7556 5.8007 -0.1111
12 6 6.8946 6.8783 -0.0110
13 6 5.5120 6.6436 0.0999
14 6 4.6211 7.7361 0.2088
15 1 5.0023 8.7466 0.2002
16 6 3.2448 7.5080 0.3276
17 7 2.4261 8.5156 0.4821
18 14 2.5776 5.7646 0.2575
19 1 1.0997 5.7941 0.3999
20 1 2.9372 5.1489 -1.0450
21 1 3.1653 4.9649 1.3622
22 7 5.0345 5.3966 0.0979
23 6 3.8827 2.8052 0.0052
24 1 -0.3633 -1.0277 0.0005
25 1 -0.3633 0.5138 0.8901
26 1 -0.3634 0.5138 -0.8900
27 1 1.8933 -0.5138 -0.8901
28 1 1.8934 -0.5138 0.8900
29 1 3.7847 -0.5729 -0.0005
30 1 6.2237 -0.2594 -0.0001
31 1 7.1780 2.0071 -0.0007
32 1 7.8711 3.6606 -0.1918
33 1 8.8216 5.9534 -0.1934
34 1 7.2793 7.8875 -0.0136
35 1 2.7771 9.4122 0.5990
36 1 3.2261 3.6627 0.0097
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001241113474.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:45:22
Heat of formation + Delta-G solvation = -14.269145 kcal
Electronic energy + Delta-G solvation = -19683.716001 eV
Core-core repulsion = 16710.557911 eV
Total energy + Delta-G solvation = -2973.158090 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 269.116 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-41.30285 -40.43165 -38.39189 -35.87310 -33.58904 -33.20214 -32.76533 -30.87590
-30.25584 -27.38348 -25.42934 -24.16596 -23.62015 -22.66170 -21.59597 -20.39992
-19.26103 -17.78951 -17.15225 -17.03415 -16.74380 -16.54618 -15.97869 -15.91182
-15.05542 -14.74717 -14.50318 -14.38811 -14.21542 -14.06053 -13.73376 -13.36867
-13.05536 -12.88725 -12.70325 -12.67288 -12.26476 -11.95598 -11.70257 -11.67270
-11.49312 -11.44775 -10.59576 -10.37228 -9.71793 -9.43317 -9.29650 -9.05210
-6.87182 -0.22197 0.47518 0.69801 1.07050 1.46871 1.58443 1.89574
2.25635 2.30461 2.51568 2.88570 3.44334 3.58235 3.85281 3.98944
4.08509 4.14796 4.22022 4.29138 4.38507 4.44388 4.53338 4.57831
4.65409 4.72149 4.81478 4.94869 4.97826 5.09861 5.20774 5.32217
5.34801 5.37490 5.43323 5.55663 5.65372 5.76359 5.87264 6.00233
6.33161 6.49811 6.58325 7.50398 7.90766
Molecular weight = 269.12amu
Principal moments of inertia in cm(-1)
A = 0.017084 B = 0.007375 C = 0.005175
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1638.592275 B = 3795.821340 C = 5409.369436
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.043 3.957
3 O -0.347 6.347
4 C 0.112 3.888
5 C -0.195 4.195
6 C -0.071 4.071
7 C -0.134 4.134
8 C -0.024 4.024
9 C 0.174 3.826
10 C -0.266 4.266
11 C -0.037 4.037
12 C -0.272 4.272
13 C 0.233 3.767
14 C -0.512 4.512
15 H 0.073 0.927
16 C 0.017 3.983
17 N -0.832 5.832
18 Si 1.192 2.808
19 H -0.337 1.337
20 H -0.299 1.299
21 H -0.291 1.291
22 N -0.590 5.590
23 C -0.180 4.180
24 H 0.109 0.891
25 H 0.056 0.944
26 H 0.057 0.943
27 H 0.080 0.920
28 H 0.079 0.921
29 H 0.165 0.835
30 H 0.176 0.824
31 H 0.156 0.844
32 H 0.157 0.843
33 H 0.157 0.843
34 H 0.117 0.883
35 H 0.284 0.716
36 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.315 -20.350 -1.015 20.827
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.031 4.031
3 O -0.262 6.262
4 C 0.067 3.933
5 C -0.214 4.214
6 C -0.088 4.088
7 C -0.153 4.153
8 C -0.025 4.025
9 C 0.037 3.963
10 C -0.288 4.288
11 C -0.061 4.061
12 C -0.294 4.294
13 C 0.108 3.892
14 C -0.545 4.545
15 H 0.091 0.909
16 C -0.199 4.199
17 N -0.456 5.456
18 Si 1.030 2.970
19 H -0.271 1.271
20 H -0.230 1.230
21 H -0.221 1.221
22 N -0.309 5.309
23 C -0.200 4.200
24 H 0.128 0.872
25 H 0.076 0.924
26 H 0.076 0.924
27 H 0.098 0.902
28 H 0.097 0.903
29 H 0.182 0.818
30 H 0.193 0.807
31 H 0.174 0.826
32 H 0.174 0.826
33 H 0.175 0.825
34 H 0.135 0.865
35 H 0.094 0.906
36 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges 1.899 -20.982 -0.943 21.089
hybrid contribution 1.895 2.216 -0.022 2.916
sum 3.794 -18.766 -0.965 19.170
Atomic orbital electron populations
1.21852 0.91897 1.04396 1.02854 1.23166 0.96765 0.80312 1.02900
1.86094 1.19000 1.32292 1.88836 1.18988 0.83209 0.93703 0.97428
1.21661 0.94548 0.98028 1.07143 1.21341 0.94404 0.97376 0.95720
1.21454 1.00663 0.90975 1.02231 1.18691 0.92131 0.91944 0.99714
1.20030 0.91482 0.90896 0.93941 1.21701 0.93570 0.98645 1.14918
1.21475 1.00175 0.91613 0.92817 1.21911 0.93312 0.99804 1.14333
1.18795 0.92649 0.89391 0.88391 1.20752 0.93804 0.93828 1.46079
0.90907 1.28253 0.94207 1.08801 0.88683 1.70647 1.39384 1.02075
1.33463 0.81538 0.69132 0.68005 0.78290 1.27124 1.22970 1.22052
1.66125 1.38615 0.99881 1.26313 1.21095 0.95925 0.96166 1.06780
0.87215 0.92437 0.92373 0.90219 0.90292 0.81776 0.80670 0.82606
0.82555 0.82507 0.86494 0.90556 0.87839
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.62 10.28 71.98 0.74 -1.88 16
2 C 0.04 0.86 5.46 71.98 0.39 1.25 16
3 O -0.35 -11.54 10.13 -92.51 -0.94 -12.48 16
4 C 0.11 3.88 6.68 22.48 0.15 4.03 16
5 C -0.20 -4.77 9.03 22.41 0.20 -4.56 16
6 C -0.07 -1.55 10.03 22.22 0.22 -1.33 16
7 C -0.13 -3.82 9.41 22.50 0.21 -3.61 16
8 C -0.02 -0.97 5.87 -20.05 -0.12 -1.08 16
9 C 0.17 8.01 6.73 42.17 0.28 8.30 16
10 C -0.27 -10.04 9.47 22.78 0.22 -9.82 16
11 C -0.04 -1.40 10.15 22.39 0.23 -1.17 16
12 C -0.27 -12.57 9.83 22.88 0.22 -12.34 16
13 C 0.23 12.81 6.43 40.26 0.26 13.07 16
14 C -0.51 -30.19 9.58 23.48 0.22 -29.97 16
15 H 0.07 4.27 8.06 -2.91 -0.02 4.25 16
16 C 0.02 1.03 5.52 85.29 0.47 1.50 16
17 N -0.83 -49.40 13.65 21.84 0.30 -49.11 16
18 Si 1.19 66.48 22.00 68.60 1.51 67.99 16
19 H -0.34 -18.47 7.11 99.48 0.71 -17.76 16
20 H -0.30 -16.93 6.62 99.48 0.66 -16.27 16
21 H -0.29 -16.36 6.32 99.48 0.63 -15.73 16
22 N -0.59 -32.01 4.18 -178.20 -0.75 -32.76 16
23 C -0.18 -7.89 9.22 22.59 0.21 -7.68 16
24 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16
25 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16
26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16
27 H 0.08 1.28 7.66 -2.39 -0.02 1.26 16
28 H 0.08 1.28 7.66 -2.39 -0.02 1.26 16
29 H 0.16 2.63 6.28 -2.91 -0.02 2.61 16
30 H 0.18 2.12 8.06 -2.91 -0.02 2.09 16
31 H 0.16 3.45 6.19 -2.91 -0.02 3.43 16
32 H 0.16 4.39 6.20 -2.91 -0.02 4.37 16
33 H 0.16 4.35 8.06 -2.91 -0.02 4.33 16
34 H 0.12 5.04 8.06 -2.91 -0.02 5.01 16
35 H 0.28 16.05 8.73 -92.72 -0.81 15.24 16
36 H 0.10 5.23 2.10 -2.91 -0.01 5.23 16
Total: -1.00 -74.05 295.18 4.98 -69.07
By element:
Atomic # 1 Polarization: 1.63 SS G_CDS: 0.94 Total: 2.56 kcal
Atomic # 6 Polarization: -49.20 SS G_CDS: 3.92 Total: -45.28 kcal
Atomic # 7 Polarization: -81.42 SS G_CDS: -0.45 Total: -81.86 kcal
Atomic # 8 Polarization: -11.54 SS G_CDS: -0.94 Total: -12.48 kcal
Atomic # 14 Polarization: 66.48 SS G_CDS: 1.51 Total: 67.99 kcal
Total: -74.05 4.98 -69.07 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001241113474.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.805 kcal
(2) G-P(sol) polarization free energy of solvation -74.052 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.247 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.978 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.074 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.269 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds