Wall clock time and date at job start Mon Mar 30 2020 00:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47374 * 2 1 4 4 C 1.35902 * 117.00285 * 180.02562 * 3 2 1 5 5 C 1.38913 * 119.97936 * 0.02562 * 4 3 2 6 6 C 1.38289 * 120.25142 * 179.97438 * 5 4 3 7 7 C 1.37969 * 120.20649 * 359.78858 * 6 5 4 8 8 C 1.39672 * 119.96170 * 0.44397 * 7 6 5 9 9 C 1.47822 * 120.12616 * 179.81046 * 8 7 6 10 10 N 1.32578 * 119.99137 * 136.14495 * 9 8 7 11 11 C 1.31744 * 121.72515 * 180.02562 * 10 9 8 12 12 C 1.38866 * 121.50385 * 359.97438 * 11 10 9 13 13 C 1.36891 * 119.79820 * 0.25532 * 12 11 10 14 14 C 1.41126 * 118.38975 * 359.51538 * 13 12 11 15 15 C 1.40894 * 120.71480 * 180.23721 * 14 13 12 16 16 H 1.08000 * 119.99367 * 151.86423 * 15 14 13 17 17 C 1.40063 * 120.00034 * 331.86573 * 15 14 13 18 18 N 1.30774 * 120.00124 * 348.01257 * 17 15 14 19 19 Si 1.86795 * 120.00131 * 168.01964 * 17 15 14 20 20 H 1.48500 * 109.46973 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47545 * 119.99949 * 19 17 15 22 22 H 1.48504 * 109.47449 * 240.00034 * 19 17 15 23 23 C 1.38396 * 119.98432 * 180.02562 * 4 3 2 24 24 H 1.09005 * 109.47209 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47138 * 299.99986 * 1 2 3 26 26 H 1.09001 * 109.46939 * 60.00419 * 1 2 3 27 27 H 1.09001 * 109.47515 * 239.99236 * 2 1 3 28 28 H 1.08999 * 109.47258 * 120.00017 * 2 1 3 29 29 H 1.08002 * 119.87739 * 0.02562 * 5 4 3 30 30 H 1.07997 * 119.89697 * 180.02562 * 6 5 4 31 31 H 1.07997 * 120.02128 * 180.25647 * 7 6 5 32 32 H 1.08000 * 119.24766 * 180.02562 * 11 10 9 33 33 H 1.07999 * 120.10281 * 179.97438 * 12 11 10 34 34 H 1.08001 * 120.80378 * 179.74665 * 13 12 11 35 35 H 0.97003 * 120.00384 * 179.97438 * 18 17 15 36 36 H 1.08004 * 120.10374 * 359.97140 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1995 0.4234 -0.0016 6 6 5.5713 0.5981 -0.0027 7 6 6.1092 1.8686 -0.0071 8 6 5.2670 2.9827 -0.0012 9 6 5.8395 4.3456 -0.0017 10 7 5.3289 5.2786 -0.7932 11 6 5.8126 6.5037 -0.8215 12 6 6.8835 6.8797 -0.0213 13 6 7.4613 5.9640 0.8162 14 6 6.9348 4.6550 0.8450 15 6 7.4887 3.6750 1.6924 16 1 6.8714 2.8697 2.0622 17 6 8.8397 3.7454 2.0552 18 7 9.6416 4.5702 1.4333 19 14 9.4961 2.6610 3.4272 20 1 8.3945 1.8236 3.9662 21 1 10.5699 1.7844 2.8947 22 1 10.0455 3.5134 4.5121 23 6 3.8823 2.8044 0.0000 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7842 -0.5736 -0.0024 30 1 6.2235 -0.2627 -0.0039 31 1 7.1810 2.0015 -0.0122 32 1 5.3655 7.2324 -1.4814 33 1 7.2622 7.8903 -0.0630 34 1 8.2975 6.2378 1.4425 35 1 10.5772 4.6192 1.6847 36 1 3.2257 3.6619 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241114083.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:24 Heat of formation + Delta-G solvation = 2.045836 kcal Electronic energy + Delta-G solvation = -19542.250313 eV Core-core repulsion = 16569.799694 eV Total energy + Delta-G solvation = -2972.450619 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.63129 -38.48252 -36.67502 -34.19770 -31.87711 -31.59507 -30.62544 -29.27155 -28.21897 -25.75426 -23.83344 -22.36929 -21.80207 -21.18042 -19.99766 -17.67807 -17.38886 -15.88094 -15.71635 -15.45710 -15.12943 -14.93237 -14.37331 -13.90207 -13.36148 -13.07812 -12.94969 -12.68115 -12.60315 -12.28245 -12.03536 -11.59699 -11.55775 -11.45017 -11.30658 -11.11850 -10.91552 -10.63161 -10.45361 -10.28856 -9.79197 -9.47886 -8.61401 -8.17320 -8.08707 -7.60680 -7.35465 -6.91851 -4.56178 1.78799 2.16844 2.60927 2.94171 2.98127 3.04259 3.13361 3.53370 3.78917 4.46005 4.55908 4.95134 5.02187 5.24665 5.36420 5.44376 5.49147 5.60033 5.69410 5.77676 5.95763 6.12805 6.18321 6.21693 6.27237 6.33685 6.63229 6.76227 6.82336 6.89320 6.99799 7.05880 7.22229 7.39895 7.47492 7.67984 7.81329 7.86415 7.96640 8.34716 8.56180 8.63147 9.54170 9.96258 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017902 B = 0.005986 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.689063 B = 4676.519376 C = 5922.111237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.321 6.321 4 C 0.115 3.885 5 C -0.228 4.228 6 C -0.094 4.094 7 C -0.127 4.127 8 C 0.062 3.938 9 C 0.010 3.990 10 N -0.451 5.451 11 C -0.030 4.030 12 C -0.149 4.149 13 C -0.127 4.127 14 C 0.087 3.913 15 C -0.438 4.438 16 H 0.090 0.910 17 C 0.073 3.927 18 N -0.788 5.788 19 Si 0.910 3.090 20 H -0.256 1.256 21 H -0.271 1.271 22 H -0.270 1.270 23 C -0.140 4.140 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.136 0.864 32 H 0.122 0.878 33 H 0.099 0.901 34 H 0.128 0.872 35 H 0.284 0.716 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.617 -7.328 0.207 9.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.236 6.236 4 C 0.071 3.929 5 C -0.247 4.247 6 C -0.112 4.112 7 C -0.146 4.146 8 C 0.061 3.939 9 C -0.128 4.128 10 N -0.158 5.158 11 C -0.192 4.192 12 C -0.170 4.170 13 C -0.153 4.153 14 C 0.082 3.918 15 C -0.467 4.467 16 H 0.108 0.892 17 C -0.146 4.146 18 N -0.413 5.413 19 Si 0.734 3.266 20 H -0.180 1.180 21 H -0.196 1.196 22 H -0.196 1.196 23 C -0.159 4.159 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.153 0.847 32 H 0.139 0.861 33 H 0.118 0.882 34 H 0.146 0.854 35 H 0.095 0.905 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.210 -7.320 -0.334 10.280 hybrid contribution 1.326 -0.329 1.106 1.758 sum -5.884 -7.649 0.772 9.681 Atomic orbital electron populations 1.21761 0.93328 1.02340 1.03385 1.22643 0.95313 0.82925 1.01026 1.86036 1.19873 1.28250 1.89442 1.18797 0.81460 0.94141 0.98543 1.21032 0.94484 0.96987 1.12181 1.20745 0.93869 0.97064 0.99513 1.21397 1.01015 0.90964 1.01265 1.18209 0.90758 0.91859 0.93114 1.19465 1.01217 0.91637 1.00495 1.67034 1.28289 1.01249 1.19243 1.21683 0.99493 0.93397 1.04606 1.21458 0.97743 0.99026 0.98747 1.21441 1.01180 0.92344 1.00350 1.18333 0.90259 0.92837 0.90334 1.19682 0.94422 1.09150 1.23446 0.89161 1.26007 0.97047 0.95481 0.96046 1.69752 1.06079 1.30969 1.34490 0.86193 0.79551 0.80223 0.80610 1.17987 1.19648 1.19550 1.20509 0.94790 0.94115 1.06536 0.90813 0.91670 0.91660 0.92472 0.92460 0.86720 0.86578 0.84658 0.86077 0.88242 0.85410 0.90459 0.85759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 37.16 0.38 -1.06 16 2 C 0.06 0.69 5.46 37.16 0.20 0.89 16 3 O -0.32 -5.45 10.13 -19.43 -0.20 -5.65 16 4 C 0.11 2.16 6.68 -39.27 -0.26 1.90 16 5 C -0.23 -3.88 9.04 -39.31 -0.36 -4.23 16 6 C -0.09 -1.67 10.03 -39.66 -0.40 -2.07 16 7 C -0.13 -2.68 7.85 -39.14 -0.31 -2.99 16 8 C 0.06 1.41 5.25 -104.93 -0.55 0.86 16 9 C 0.01 0.24 6.43 -82.24 -0.53 -0.29 16 10 N -0.45 -11.27 10.15 -9.17 -0.09 -11.36 16 11 C -0.03 -0.70 11.16 -17.36 -0.19 -0.90 16 12 C -0.15 -3.41 10.03 -39.84 -0.40 -3.81 16 13 C -0.13 -3.18 8.72 -38.97 -0.34 -3.52 16 14 C 0.09 2.24 5.54 -106.41 -0.59 1.65 16 15 C -0.44 -10.84 6.73 -37.89 -0.25 -11.09 16 16 H 0.09 2.21 6.48 -52.49 -0.34 1.87 16 17 C 0.07 1.71 5.25 -17.32 -0.09 1.62 16 18 N -0.79 -18.96 10.90 55.55 0.61 -18.36 16 19 Si 0.91 17.60 29.58 -169.99 -5.03 12.58 16 20 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 21 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 22 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 23 C -0.14 -3.00 9.60 -39.01 -0.37 -3.37 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.64 7.65 -51.93 -0.40 0.25 16 28 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 29 H 0.11 1.59 6.28 -52.49 -0.33 1.26 16 30 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.14 2.97 6.76 -52.49 -0.35 2.61 16 32 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 33 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 34 H 0.13 3.21 6.32 -52.49 -0.33 2.88 16 35 H 0.28 6.19 8.30 -40.82 -0.34 5.86 16 36 H 0.12 2.70 8.06 -52.48 -0.42 2.28 16 LS Contribution 306.23 15.07 4.61 4.61 Total: -1.00 -27.66 306.23 -8.40 -36.06 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -4.25 Total: 8.51 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: -4.06 Total: -26.39 kcal Atomic # 7 Polarization: -30.23 SS G_CDS: 0.51 Total: -29.72 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.20 Total: -5.65 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.66 -8.40 -36.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241114083.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.110 kcal (2) G-P(sol) polarization free energy of solvation -27.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds