Wall clock time and date at job start Mon Mar 30 2020 00:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47374 * 2 1 4 4 C 1.35902 * 117.00285 * 180.02562 * 3 2 1 5 5 C 1.38913 * 119.97936 * 0.02562 * 4 3 2 6 6 C 1.38289 * 120.25142 * 179.97438 * 5 4 3 7 7 C 1.37969 * 120.20649 * 359.78858 * 6 5 4 8 8 C 1.39672 * 119.96170 * 0.44397 * 7 6 5 9 9 C 1.47822 * 120.12616 * 179.81046 * 8 7 6 10 10 N 1.32578 * 119.99137 * 136.14495 * 9 8 7 11 11 C 1.31744 * 121.72515 * 180.02562 * 10 9 8 12 12 C 1.38866 * 121.50385 * 359.97438 * 11 10 9 13 13 C 1.36891 * 119.79820 * 0.25532 * 12 11 10 14 14 C 1.41126 * 118.38975 * 359.51538 * 13 12 11 15 15 C 1.40894 * 120.71480 * 180.23721 * 14 13 12 16 16 H 1.08000 * 119.99367 * 151.86423 * 15 14 13 17 17 C 1.40063 * 120.00034 * 331.86573 * 15 14 13 18 18 N 1.30774 * 120.00124 * 348.01257 * 17 15 14 19 19 Si 1.86795 * 120.00131 * 168.01964 * 17 15 14 20 20 H 1.48500 * 109.46973 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47545 * 119.99949 * 19 17 15 22 22 H 1.48504 * 109.47449 * 240.00034 * 19 17 15 23 23 C 1.38396 * 119.98432 * 180.02562 * 4 3 2 24 24 H 1.09005 * 109.47209 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47138 * 299.99986 * 1 2 3 26 26 H 1.09001 * 109.46939 * 60.00419 * 1 2 3 27 27 H 1.09001 * 109.47515 * 239.99236 * 2 1 3 28 28 H 1.08999 * 109.47258 * 120.00017 * 2 1 3 29 29 H 1.08002 * 119.87739 * 0.02562 * 5 4 3 30 30 H 1.07997 * 119.89697 * 180.02562 * 6 5 4 31 31 H 1.07997 * 120.02128 * 180.25647 * 7 6 5 32 32 H 1.08000 * 119.24766 * 180.02562 * 11 10 9 33 33 H 1.07999 * 120.10281 * 179.97438 * 12 11 10 34 34 H 1.08001 * 120.80378 * 179.74665 * 13 12 11 35 35 H 0.97003 * 120.00384 * 179.97438 * 18 17 15 36 36 H 1.08004 * 120.10374 * 359.97140 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1995 0.4234 -0.0016 6 6 5.5713 0.5981 -0.0027 7 6 6.1092 1.8686 -0.0071 8 6 5.2670 2.9827 -0.0012 9 6 5.8395 4.3456 -0.0017 10 7 5.3289 5.2786 -0.7932 11 6 5.8126 6.5037 -0.8215 12 6 6.8835 6.8797 -0.0213 13 6 7.4613 5.9640 0.8162 14 6 6.9348 4.6550 0.8450 15 6 7.4887 3.6750 1.6924 16 1 6.8714 2.8697 2.0622 17 6 8.8397 3.7454 2.0552 18 7 9.6416 4.5702 1.4333 19 14 9.4961 2.6610 3.4272 20 1 8.3945 1.8236 3.9662 21 1 10.5699 1.7844 2.8947 22 1 10.0455 3.5134 4.5121 23 6 3.8823 2.8044 0.0000 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7842 -0.5736 -0.0024 30 1 6.2235 -0.2627 -0.0039 31 1 7.1810 2.0015 -0.0122 32 1 5.3655 7.2324 -1.4814 33 1 7.2622 7.8903 -0.0630 34 1 8.2975 6.2378 1.4425 35 1 10.5772 4.6192 1.6847 36 1 3.2257 3.6619 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241114083.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:24 Heat of formation + Delta-G solvation = -12.214928 kcal Electronic energy + Delta-G solvation = -19542.868706 eV Core-core repulsion = 16569.799694 eV Total energy + Delta-G solvation = -2973.069012 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.08366 -40.17591 -38.13737 -36.00882 -33.31976 -32.85813 -32.44190 -30.75922 -29.79670 -27.56853 -25.11995 -23.89020 -23.37304 -22.84031 -21.52726 -19.33309 -18.98851 -17.45768 -16.95105 -16.89099 -16.67191 -16.59366 -16.06626 -15.57034 -14.85674 -14.43318 -14.25926 -14.18908 -13.98909 -13.76879 -13.34993 -13.27052 -13.15848 -12.84480 -12.74506 -12.63275 -12.37541 -12.19383 -11.76650 -11.58572 -11.47268 -11.21513 -10.34596 -9.97604 -9.92213 -9.24076 -8.97219 -8.68079 -6.42584 0.17266 0.64229 0.87371 1.17216 1.39395 1.50145 1.54202 2.17858 2.33960 2.71497 2.95281 3.67155 3.85521 3.98599 4.11324 4.15050 4.26793 4.42401 4.46785 4.54846 4.57361 4.62710 4.70860 4.82430 4.91123 4.98078 5.04696 5.15870 5.21502 5.23878 5.27663 5.44802 5.62638 5.76776 5.79246 5.96763 6.02381 6.04760 6.48832 6.60316 6.71928 6.78420 7.68234 8.22800 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017902 B = 0.005986 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.689063 B = 4676.519376 C = 5922.111237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.043 3.957 3 O -0.338 6.338 4 C 0.119 3.881 5 C -0.213 4.213 6 C -0.082 4.082 7 C -0.144 4.144 8 C 0.034 3.966 9 C -0.009 4.009 10 N -0.471 5.471 11 C -0.041 4.041 12 C -0.148 4.148 13 C -0.151 4.151 14 C 0.059 3.941 15 C -0.454 4.454 16 H 0.085 0.915 17 C 0.039 3.961 18 N -0.816 5.816 19 Si 0.980 3.020 20 H -0.257 1.257 21 H -0.261 1.261 22 H -0.264 1.264 23 C -0.162 4.162 24 H 0.105 0.895 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.157 0.843 30 H 0.154 0.846 31 H 0.117 0.883 32 H 0.152 0.848 33 H 0.132 0.868 34 H 0.120 0.880 35 H 0.293 0.707 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.086 -9.808 0.615 12.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 O -0.253 6.253 4 C 0.074 3.926 5 C -0.232 4.232 6 C -0.100 4.100 7 C -0.164 4.164 8 C 0.033 3.967 9 C -0.147 4.147 10 N -0.179 5.179 11 C -0.201 4.201 12 C -0.167 4.167 13 C -0.177 4.177 14 C 0.054 3.946 15 C -0.483 4.483 16 H 0.103 0.897 17 C -0.178 4.178 18 N -0.441 5.441 19 Si 0.801 3.199 20 H -0.181 1.181 21 H -0.186 1.186 22 H -0.188 1.188 23 C -0.181 4.181 24 H 0.123 0.877 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.175 0.825 30 H 0.171 0.829 31 H 0.135 0.865 32 H 0.169 0.831 33 H 0.150 0.850 34 H 0.138 0.862 35 H 0.104 0.896 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.697 -9.791 0.059 12.454 hybrid contribution 1.348 0.403 0.911 1.676 sum -6.349 -9.388 0.969 11.374 Atomic orbital electron populations 1.21806 0.91437 1.04247 1.02977 1.23095 0.96915 0.80788 1.02382 1.86041 1.18643 1.31582 1.89012 1.18809 0.82782 0.93603 0.97363 1.21437 0.93823 0.98243 1.09683 1.21123 0.94900 0.96686 0.97268 1.21321 0.99971 0.92071 1.03006 1.18275 0.91699 0.91438 0.95318 1.19930 1.01426 0.92933 1.00364 1.67098 1.28965 1.02089 1.19763 1.22254 0.99503 0.93513 1.04876 1.21758 0.97201 1.00157 0.97629 1.21512 1.01756 0.92872 1.01550 1.18689 0.91091 0.93652 0.91120 1.19758 0.95300 1.09165 1.24097 0.89689 1.26788 0.96591 0.96641 0.97786 1.69788 1.06758 1.32036 1.35489 0.85157 0.78839 0.78443 0.77485 1.18059 1.18566 1.18846 1.20406 0.94125 0.95151 1.08447 0.87685 0.92137 0.92082 0.90956 0.91027 0.82521 0.82863 0.86479 0.83062 0.85004 0.86188 0.89558 0.87584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 10.28 71.98 0.74 -1.66 16 2 C 0.04 0.91 5.46 71.98 0.39 1.30 16 3 O -0.34 -10.97 10.13 -92.45 -0.94 -11.90 16 4 C 0.12 4.37 6.68 22.47 0.15 4.52 16 5 C -0.21 -6.61 9.04 22.44 0.20 -6.41 16 6 C -0.08 -2.73 10.03 22.22 0.22 -2.51 16 7 C -0.14 -6.16 7.85 22.55 0.18 -5.98 16 8 C 0.03 1.60 5.25 -20.06 -0.11 1.50 16 9 C -0.01 -0.47 6.43 42.47 0.27 -0.20 16 10 N -0.47 -24.44 10.15 -182.93 -1.86 -26.29 16 11 C -0.04 -1.91 11.16 84.86 0.95 -0.96 16 12 C -0.15 -6.81 10.03 22.10 0.22 -6.59 16 13 C -0.15 -7.81 8.72 22.66 0.20 -7.61 16 14 C 0.06 3.18 5.54 -21.02 -0.12 3.06 16 15 C -0.45 -23.29 6.73 23.36 0.16 -23.14 16 16 H 0.09 4.31 6.48 -2.91 -0.02 4.29 16 17 C 0.04 1.82 5.25 85.29 0.45 2.27 16 18 N -0.82 -39.94 10.90 21.85 0.24 -39.70 16 19 Si 0.98 35.89 29.58 68.60 2.03 37.92 16 20 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 21 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 22 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 23 C -0.16 -7.13 9.60 22.64 0.22 -6.92 16 24 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 27 H 0.07 1.34 7.65 -2.39 -0.02 1.32 16 28 H 0.07 1.34 7.66 -2.39 -0.02 1.32 16 29 H 0.16 3.53 6.28 -2.91 -0.02 3.51 16 30 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 31 H 0.12 5.33 6.76 -2.91 -0.02 5.31 16 32 H 0.15 5.96 8.06 -2.91 -0.02 5.93 16 33 H 0.13 5.07 8.06 -2.91 -0.02 5.05 16 34 H 0.12 6.27 6.32 -2.91 -0.02 6.25 16 35 H 0.29 12.86 8.30 -92.71 -0.77 12.09 16 36 H 0.11 4.91 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -62.65 306.23 4.69 -57.97 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: 1.09 Total: 31.34 kcal Atomic # 6 Polarization: -53.45 SS G_CDS: 4.13 Total: -49.33 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: -1.62 Total: -66.00 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -0.94 Total: -11.90 kcal Atomic # 14 Polarization: 35.89 SS G_CDS: 2.03 Total: 37.92 kcal Total: -62.65 4.69 -57.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241114083.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.752 kcal (2) G-P(sol) polarization free energy of solvation -62.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds