Wall clock time and date at job start Mon Mar 30 2020 00:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.47148 * 2 1 4 4 C 1.35911 * 116.99996 * 180.02562 * 3 2 1 5 5 C 1.38894 * 119.98112 * 359.97438 * 4 3 2 6 6 C 1.38270 * 120.23624 * 180.02562 * 5 4 3 7 7 C 1.37989 * 120.20583 * 359.97438 * 6 5 4 8 8 C 1.39612 * 119.96103 * 0.02562 * 7 6 5 9 9 C 1.47977 * 120.11718 * 179.97438 * 8 7 6 10 10 C 1.39884 * 119.44907 * 4.73697 * 9 8 7 11 11 C 1.36611 * 119.46502 * 179.72362 * 10 9 8 12 12 C 1.41298 * 118.41537 * 0.53020 * 11 10 9 13 13 C 1.41050 * 120.55709 * 179.70732 * 12 11 10 14 14 H 1.08001 * 119.99867 * 330.36219 * 13 12 11 15 15 C 1.40030 * 120.00005 * 150.36122 * 13 12 11 16 16 N 1.30794 * 119.99852 * 161.80476 * 15 13 12 17 17 Si 1.86793 * 120.00089 * 341.80583 * 15 13 12 18 18 H 1.48501 * 109.47143 * 95.40539 * 17 15 13 19 19 H 1.48493 * 109.47102 * 215.41050 * 17 15 13 20 20 H 1.48501 * 109.47167 * 335.40707 * 17 15 13 21 21 C 1.40953 * 118.88981 * 359.73364 * 12 11 10 22 22 N 1.31265 * 120.39805 * 359.97438 * 21 12 11 23 23 C 1.38413 * 119.98159 * 179.72588 * 4 3 2 24 24 H 1.09002 * 109.47096 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47621 * 300.00608 * 1 2 3 26 26 H 1.09007 * 109.46655 * 60.00414 * 1 2 3 27 27 H 1.09001 * 109.47098 * 239.99334 * 2 1 3 28 28 H 1.09007 * 109.46655 * 119.99586 * 2 1 3 29 29 H 1.07998 * 119.88399 * 0.02919 * 5 4 3 30 30 H 1.08000 * 119.90246 * 180.02562 * 6 5 4 31 31 H 1.08000 * 120.02392 * 180.02562 * 7 6 5 32 32 H 1.08000 * 120.27068 * 359.97399 * 10 9 8 33 33 H 1.08004 * 120.79141 * 180.26212 * 11 10 9 34 34 H 0.96994 * 119.99903 * 180.02562 * 16 15 13 35 35 H 1.07997 * 119.79800 * 179.97438 * 21 12 11 36 36 H 1.08005 * 120.10359 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1994 0.4235 -0.0005 6 6 5.5710 0.5986 -0.0005 7 6 6.1087 1.8694 -0.0011 8 6 5.2664 2.9828 -0.0011 9 6 5.8393 4.3472 -0.0012 10 6 7.2248 4.5114 -0.1018 11 6 7.7536 5.7710 -0.1075 12 6 6.8728 6.8705 0.0008 13 6 7.3704 8.1903 0.0057 14 1 8.3559 8.3943 0.3977 15 6 6.5868 9.2359 -0.4977 16 7 6.8686 10.4740 -0.1836 17 14 5.1392 8.8627 -1.6176 18 1 3.8932 8.8011 -0.8121 19 1 5.0155 9.9327 -2.6398 20 1 5.3581 7.5575 -2.2913 21 6 5.4884 6.6264 0.1044 22 7 5.0285 5.3969 0.0995 23 6 3.8824 2.8045 -0.0063 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.7843 -0.5735 -0.0006 30 1 6.2236 -0.2619 -0.0009 31 1 7.1804 2.0028 -0.0015 32 1 7.8710 3.6494 -0.1783 33 1 8.8199 5.9226 -0.1885 34 1 6.3256 11.1982 -0.5319 35 1 4.8020 7.4559 0.1882 36 1 3.2257 3.6620 -0.0108 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241114175.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:26 Heat of formation + Delta-G solvation = 2.438606 kcal Electronic energy + Delta-G solvation = -19033.818209 eV Core-core repulsion = 16061.384622 eV Total energy + Delta-G solvation = -2972.433587 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.86091 -38.75410 -37.00787 -34.16422 -32.03546 -31.90125 -31.23479 -29.73724 -28.84987 -25.61836 -23.72048 -23.00592 -21.91937 -21.35276 -20.21504 -17.97746 -17.82027 -16.12494 -16.03623 -15.70994 -15.37798 -15.06536 -14.51585 -13.83980 -13.43263 -13.38825 -13.12759 -13.06489 -12.81567 -12.69305 -12.45199 -11.99020 -11.79862 -11.59694 -11.24106 -11.16382 -11.02263 -10.68294 -10.65750 -10.42260 -10.12841 -9.55916 -8.86593 -8.66953 -8.24631 -7.94155 -7.43716 -7.26756 -4.72707 1.37959 1.85448 2.51523 2.59267 3.01489 3.10606 3.19314 3.34413 3.78372 4.08278 4.52245 4.82523 4.87416 5.08042 5.13222 5.20475 5.30446 5.33656 5.44289 5.63486 5.66232 5.80391 5.83481 5.96553 5.98571 6.17698 6.21450 6.47019 6.49228 6.66591 6.75068 6.78278 6.91620 7.05310 7.12450 7.37673 7.46087 7.72992 7.76390 7.96732 8.27101 8.40794 9.29657 9.72232 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.026803 B = 0.004364 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.400138 B = 6414.910399 C = 7295.746782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.319 6.319 4 C 0.127 3.873 5 C -0.236 4.236 6 C -0.080 4.080 7 C -0.168 4.168 8 C 0.055 3.945 9 C -0.013 4.013 10 C -0.099 4.099 11 C -0.186 4.186 12 C 0.047 3.953 13 C -0.413 4.413 14 H 0.098 0.902 15 C 0.081 3.919 16 N -0.783 5.783 17 Si 0.911 3.089 18 H -0.261 1.261 19 H -0.284 1.284 20 H -0.244 1.244 21 C -0.025 4.025 22 N -0.432 5.432 23 C -0.144 4.144 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.293 0.707 35 H 0.133 0.867 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.950 -14.899 -1.076 16.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.233 6.233 4 C 0.082 3.918 5 C -0.255 4.255 6 C -0.098 4.098 7 C -0.187 4.187 8 C 0.054 3.946 9 C -0.146 4.146 10 C -0.119 4.119 11 C -0.210 4.210 12 C 0.041 3.959 13 C -0.441 4.441 14 H 0.116 0.884 15 C -0.142 4.142 16 N -0.404 5.404 17 Si 0.736 3.264 18 H -0.186 1.186 19 H -0.210 1.210 20 H -0.167 1.167 21 C -0.191 4.191 22 N -0.139 5.139 23 C -0.163 4.163 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.104 0.896 35 H 0.150 0.850 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.969 -14.608 -1.002 16.216 hybrid contribution 0.501 0.012 -0.485 0.697 sum -6.469 -14.596 -1.486 16.034 Atomic orbital electron populations 1.21771 0.93137 1.02461 1.03528 1.22682 0.95518 0.82680 1.01058 1.86070 1.19664 1.28493 1.89080 1.18891 0.81690 0.94137 0.97065 1.21040 0.94418 0.97237 1.12807 1.20678 0.94043 0.96754 0.98299 1.21085 0.99637 0.91633 1.06394 1.18400 0.91507 0.91548 0.93124 1.18746 0.89588 0.90342 1.15895 1.21277 0.94876 0.97123 0.98588 1.21040 0.99051 0.91961 1.08994 1.18709 0.92854 0.94277 0.90028 1.19595 1.03404 0.89228 1.31836 0.88415 1.26320 0.98121 0.94284 0.95426 1.69651 1.36547 1.00781 1.33450 0.86300 0.80206 0.79881 0.79991 1.18621 1.21037 1.16733 1.22469 0.93685 0.92646 1.10327 1.66927 1.39949 0.99285 1.07781 1.20515 0.94942 0.94539 1.06343 0.90696 0.91562 0.91588 0.92383 0.92367 0.86467 0.86424 0.85985 0.87264 0.86940 0.89648 0.84967 0.84599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.16 0.38 -0.92 16 2 C 0.06 0.61 5.46 37.16 0.20 0.81 16 3 O -0.32 -4.96 10.13 -19.46 -0.20 -5.16 16 4 C 0.13 2.15 6.68 -39.27 -0.26 1.88 16 5 C -0.24 -3.44 9.04 -39.33 -0.36 -3.80 16 6 C -0.08 -1.15 10.03 -39.66 -0.40 -1.54 16 7 C -0.17 -2.81 9.41 -39.16 -0.37 -3.17 16 8 C 0.06 1.10 5.87 -104.90 -0.62 0.48 16 9 C -0.01 -0.28 6.73 -82.75 -0.56 -0.84 16 10 C -0.10 -2.08 9.37 -39.55 -0.37 -2.45 16 11 C -0.19 -4.16 9.87 -39.01 -0.39 -4.55 16 12 C 0.05 1.15 5.12 -106.64 -0.55 0.60 16 13 C -0.41 -10.46 9.58 -37.85 -0.36 -10.83 16 14 H 0.10 2.54 8.06 -52.49 -0.42 2.12 16 15 C 0.08 1.99 5.41 -17.32 -0.09 1.90 16 16 N -0.78 -19.33 13.93 55.55 0.77 -18.56 16 17 Si 0.91 19.94 24.52 -169.99 -4.17 15.77 16 18 H -0.26 -5.59 6.71 56.52 0.38 -5.21 16 19 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.24 -5.67 6.86 56.52 0.39 -5.28 16 21 C -0.03 -0.63 8.37 -16.77 -0.14 -0.77 16 22 N -0.43 -10.57 9.40 -9.10 -0.09 -10.66 16 23 C -0.14 -2.81 9.51 -39.03 -0.37 -3.18 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 27 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 28 H 0.06 0.57 7.66 -51.92 -0.40 0.17 16 29 H 0.12 1.37 6.28 -52.49 -0.33 1.04 16 30 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.12 1.82 6.17 -52.49 -0.32 1.50 16 32 H 0.11 1.92 6.17 -52.49 -0.32 1.59 16 33 H 0.11 2.28 8.06 -52.48 -0.42 1.86 16 34 H 0.29 6.49 8.29 -40.82 -0.34 6.15 16 35 H 0.13 3.21 4.72 -52.49 -0.25 2.96 16 36 H 0.14 2.81 7.53 -52.48 -0.40 2.42 16 LS Contribution 302.47 15.07 4.56 4.56 Total: -1.00 -27.67 302.47 -7.48 -35.15 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -4.12 Total: 5.26 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: -4.24 Total: -26.37 kcal Atomic # 7 Polarization: -29.90 SS G_CDS: 0.69 Total: -29.21 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.20 Total: -5.16 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.17 Total: 15.77 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.67 -7.48 -35.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241114175.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.594 kcal (2) G-P(sol) polarization free energy of solvation -27.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds