Wall clock time and date at job start Mon Mar 30 2020 00:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.47148 * 2 1 4 4 C 1.35911 * 116.99996 * 180.02562 * 3 2 1 5 5 C 1.38894 * 119.98112 * 359.97438 * 4 3 2 6 6 C 1.38270 * 120.23624 * 180.02562 * 5 4 3 7 7 C 1.37989 * 120.20583 * 359.97438 * 6 5 4 8 8 C 1.39612 * 119.96103 * 0.02562 * 7 6 5 9 9 C 1.47977 * 120.11718 * 179.97438 * 8 7 6 10 10 C 1.39884 * 119.44907 * 4.73697 * 9 8 7 11 11 C 1.36611 * 119.46502 * 179.72362 * 10 9 8 12 12 C 1.41298 * 118.41537 * 0.53020 * 11 10 9 13 13 C 1.41050 * 120.55709 * 179.70732 * 12 11 10 14 14 H 1.08001 * 119.99867 * 330.36219 * 13 12 11 15 15 C 1.40030 * 120.00005 * 150.36122 * 13 12 11 16 16 N 1.30794 * 119.99852 * 161.80476 * 15 13 12 17 17 Si 1.86793 * 120.00089 * 341.80583 * 15 13 12 18 18 H 1.48501 * 109.47143 * 95.40539 * 17 15 13 19 19 H 1.48493 * 109.47102 * 215.41050 * 17 15 13 20 20 H 1.48501 * 109.47167 * 335.40707 * 17 15 13 21 21 C 1.40953 * 118.88981 * 359.73364 * 12 11 10 22 22 N 1.31265 * 120.39805 * 359.97438 * 21 12 11 23 23 C 1.38413 * 119.98159 * 179.72588 * 4 3 2 24 24 H 1.09002 * 109.47096 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47621 * 300.00608 * 1 2 3 26 26 H 1.09007 * 109.46655 * 60.00414 * 1 2 3 27 27 H 1.09001 * 109.47098 * 239.99334 * 2 1 3 28 28 H 1.09007 * 109.46655 * 119.99586 * 2 1 3 29 29 H 1.07998 * 119.88399 * 0.02919 * 5 4 3 30 30 H 1.08000 * 119.90246 * 180.02562 * 6 5 4 31 31 H 1.08000 * 120.02392 * 180.02562 * 7 6 5 32 32 H 1.08000 * 120.27068 * 359.97399 * 10 9 8 33 33 H 1.08004 * 120.79141 * 180.26212 * 11 10 9 34 34 H 0.96994 * 119.99903 * 180.02562 * 16 15 13 35 35 H 1.07997 * 119.79800 * 179.97438 * 21 12 11 36 36 H 1.08005 * 120.10359 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1994 0.4235 -0.0005 6 6 5.5710 0.5986 -0.0005 7 6 6.1087 1.8694 -0.0011 8 6 5.2664 2.9828 -0.0011 9 6 5.8393 4.3472 -0.0012 10 6 7.2248 4.5114 -0.1018 11 6 7.7536 5.7710 -0.1075 12 6 6.8728 6.8705 0.0008 13 6 7.3704 8.1903 0.0057 14 1 8.3559 8.3943 0.3977 15 6 6.5868 9.2359 -0.4977 16 7 6.8686 10.4740 -0.1836 17 14 5.1392 8.8627 -1.6176 18 1 3.8932 8.8011 -0.8121 19 1 5.0155 9.9327 -2.6398 20 1 5.3581 7.5575 -2.2913 21 6 5.4884 6.6264 0.1044 22 7 5.0285 5.3969 0.0995 23 6 3.8824 2.8045 -0.0063 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.7843 -0.5735 -0.0006 30 1 6.2236 -0.2619 -0.0009 31 1 7.1804 2.0028 -0.0015 32 1 7.8710 3.6494 -0.1783 33 1 8.8199 5.9226 -0.1885 34 1 6.3256 11.1982 -0.5319 35 1 4.8020 7.4559 0.1882 36 1 3.2257 3.6620 -0.0108 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241114175.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:26 Heat of formation + Delta-G solvation = -13.239511 kcal Electronic energy + Delta-G solvation = -19034.498063 eV Core-core repulsion = 16061.384622 eV Total energy + Delta-G solvation = -2973.113441 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.16739 -40.38631 -38.29871 -35.95488 -33.58972 -33.14219 -32.72227 -31.16464 -30.19008 -27.28312 -24.83280 -24.62861 -23.39239 -22.78198 -21.63709 -19.69862 -19.22716 -17.75672 -17.03195 -16.99220 -16.82643 -16.64524 -16.09186 -15.48929 -15.01813 -14.79289 -14.60926 -14.25848 -14.18255 -14.05029 -13.67933 -13.35188 -13.17413 -12.92928 -12.74386 -12.68427 -12.52814 -12.22307 -11.95090 -11.65495 -11.62461 -11.33559 -10.53331 -10.31957 -10.05383 -9.31318 -9.10021 -8.97500 -6.62071 -0.10611 0.57841 0.73093 0.92033 1.22830 1.34614 1.40325 2.00624 2.30795 2.45342 2.95038 3.52188 3.60506 3.91664 4.01695 4.08382 4.19293 4.26329 4.31519 4.37175 4.40776 4.53491 4.58324 4.70187 4.76092 4.87366 4.94888 5.01106 5.08849 5.19140 5.21624 5.39267 5.46131 5.49394 5.59968 5.82855 5.90065 5.96880 6.08938 6.42794 6.56351 6.56503 7.47642 7.95594 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.026803 B = 0.004364 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.400138 B = 6414.910399 C = 7295.746782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 O -0.342 6.342 4 C 0.120 3.880 5 C -0.218 4.218 6 C -0.069 4.069 7 C -0.164 4.164 8 C 0.019 3.981 9 C -0.004 4.004 10 C -0.099 4.099 11 C -0.186 4.186 12 C 0.031 3.969 13 C -0.449 4.449 14 H 0.078 0.922 15 C 0.059 3.941 16 N -0.816 5.816 17 Si 0.956 3.044 18 H -0.260 1.260 19 H -0.262 1.262 20 H -0.268 1.268 21 C -0.047 4.047 22 N -0.459 5.459 23 C -0.168 4.168 24 H 0.105 0.895 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.155 0.845 30 H 0.164 0.836 31 H 0.143 0.857 32 H 0.153 0.847 33 H 0.133 0.867 34 H 0.302 0.698 35 H 0.127 0.873 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.060 -19.472 -1.498 20.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.257 6.257 4 C 0.075 3.925 5 C -0.236 4.236 6 C -0.087 4.087 7 C -0.183 4.183 8 C 0.018 3.982 9 C -0.139 4.139 10 C -0.118 4.118 11 C -0.211 4.211 12 C 0.027 3.973 13 C -0.477 4.477 14 H 0.096 0.904 15 C -0.161 4.161 16 N -0.440 5.440 17 Si 0.780 3.220 18 H -0.186 1.186 19 H -0.188 1.188 20 H -0.193 1.193 21 C -0.210 4.210 22 N -0.166 5.166 23 C -0.188 4.188 24 H 0.124 0.876 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.173 0.827 30 H 0.181 0.819 31 H 0.161 0.839 32 H 0.171 0.829 33 H 0.151 0.849 34 H 0.113 0.887 35 H 0.144 0.856 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.097 -19.138 -1.420 20.461 hybrid contribution 0.411 0.928 -0.313 1.062 sum -6.686 -18.211 -1.734 19.477 Atomic orbital electron populations 1.21821 0.91756 1.04244 1.02876 1.23091 0.96745 0.80685 1.02493 1.86065 1.19036 1.31690 1.88873 1.18945 0.82829 0.93826 0.96892 1.21515 0.94435 0.98048 1.09645 1.21192 0.94515 0.97171 0.95807 1.21365 1.00315 0.91480 1.05137 1.18465 0.92162 0.91129 0.96458 1.19511 0.90516 0.91287 1.12599 1.21671 0.94787 0.98005 0.97366 1.21405 0.99956 0.92034 1.07691 1.18850 0.93209 0.94780 0.90497 1.19511 1.03193 0.90242 1.34787 0.90406 1.26713 0.99385 0.94094 0.95871 1.69646 1.38031 1.01312 1.34993 0.85631 0.78421 0.78888 0.79061 1.18586 1.18779 1.19274 1.22455 0.93911 0.92932 1.11666 1.66978 1.40978 0.99653 1.09034 1.20439 0.94916 0.95231 1.08207 0.87633 0.92258 0.92269 0.90787 0.90793 0.82726 0.81873 0.83927 0.82913 0.84917 0.88654 0.85599 0.87559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 10.28 71.98 0.74 -1.44 16 2 C 0.04 0.81 5.46 71.98 0.39 1.20 16 3 O -0.34 -10.07 10.13 -92.54 -0.94 -11.01 16 4 C 0.12 3.81 6.68 22.47 0.15 3.96 16 5 C -0.22 -5.28 9.04 22.43 0.20 -5.08 16 6 C -0.07 -1.60 10.03 22.22 0.22 -1.37 16 7 C -0.16 -4.79 9.41 22.54 0.21 -4.58 16 8 C 0.02 0.72 5.87 -20.05 -0.12 0.60 16 9 C 0.00 -0.16 6.73 41.95 0.28 0.12 16 10 C -0.10 -3.99 9.37 22.29 0.21 -3.78 16 11 C -0.19 -8.28 9.87 22.64 0.22 -8.05 16 12 C 0.03 1.60 5.12 -21.17 -0.11 1.50 16 13 C -0.45 -23.94 9.58 23.39 0.22 -23.71 16 14 H 0.08 4.31 8.06 -2.91 -0.02 4.29 16 15 C 0.06 3.02 5.41 85.28 0.46 3.48 16 16 N -0.82 -41.94 13.93 21.84 0.30 -41.64 16 17 Si 0.96 42.75 24.52 68.60 1.68 44.43 16 18 H -0.26 -11.44 6.71 99.48 0.67 -10.77 16 19 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 20 H -0.27 -12.90 6.86 99.48 0.68 -12.22 16 21 C -0.05 -2.43 8.37 85.44 0.71 -1.71 16 22 N -0.46 -23.12 9.40 -182.71 -1.72 -24.84 16 23 C -0.17 -6.54 9.51 22.63 0.22 -6.32 16 24 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 28 H 0.07 1.13 7.66 -2.38 -0.02 1.11 16 29 H 0.16 2.60 6.28 -2.91 -0.02 2.58 16 30 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 31 H 0.14 3.51 6.17 -2.91 -0.02 3.49 16 32 H 0.15 4.74 6.17 -2.91 -0.02 4.72 16 33 H 0.13 5.27 8.06 -2.91 -0.02 5.25 16 34 H 0.30 13.83 8.29 -92.71 -0.77 13.07 16 35 H 0.13 6.47 4.72 -2.91 -0.01 6.46 16 36 H 0.11 4.64 7.53 -2.91 -0.02 4.62 16 Total: -1.00 -63.80 302.47 4.39 -59.41 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 1.03 Total: 18.84 kcal Atomic # 6 Polarization: -49.22 SS G_CDS: 4.02 Total: -45.19 kcal Atomic # 7 Polarization: -65.07 SS G_CDS: -1.41 Total: -66.48 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -0.94 Total: -11.01 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.68 Total: 44.43 kcal Total: -63.80 4.39 -59.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241114175.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.170 kcal (2) G-P(sol) polarization free energy of solvation -63.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds