Wall clock time and date at job start Mon Mar 30 2020 00:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47437 * 2 1 4 4 C 1.35903 * 117.00264 * 180.02562 * 3 2 1 5 5 C 1.38828 * 119.99680 * 359.72218 * 4 3 2 6 6 C 1.38205 * 120.19439 * 179.76610 * 5 4 3 7 7 C 1.38070 * 120.17925 * 0.51466 * 6 5 4 8 8 C 1.39354 * 119.98678 * 359.74041 * 7 6 5 9 9 C 1.48374 * 120.09340 * 180.02562 * 8 7 6 10 10 C 1.38885 * 119.61430 * 359.71186 * 9 8 7 11 11 C 1.40849 * 118.76600 * 179.74317 * 10 9 8 12 12 C 1.41521 * 120.99237 * 180.27960 * 11 10 9 13 13 H 1.08002 * 119.99964 * 203.52678 * 12 11 10 14 14 C 1.40049 * 119.99889 * 23.52520 * 12 11 10 15 15 N 1.30731 * 120.00138 * 17.02469 * 14 12 11 16 16 Si 1.86797 * 119.99812 * 197.02352 * 14 12 11 17 17 H 1.48506 * 109.47306 * 89.99819 * 16 14 12 18 18 H 1.48500 * 109.47100 * 209.99776 * 16 14 12 19 19 H 1.48497 * 109.47532 * 330.00175 * 16 14 12 20 20 C 1.41143 * 118.02083 * 0.51025 * 11 10 9 21 21 C 1.37746 * 119.07192 * 359.74563 * 20 11 10 22 22 N 1.31911 * 121.15511 * 359.97438 * 21 20 11 23 23 C 1.38497 * 119.99324 * 180.02562 * 4 3 2 24 24 H 1.09004 * 109.47263 * 60.00418 * 1 2 3 25 25 H 1.09005 * 109.46671 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47223 * 299.99735 * 1 2 3 27 27 H 1.09006 * 109.46860 * 240.00185 * 2 1 3 28 28 H 1.08998 * 109.47242 * 120.00292 * 2 1 3 29 29 H 1.08001 * 119.90438 * 0.02562 * 5 4 3 30 30 H 1.07993 * 119.91441 * 180.25756 * 6 5 4 31 31 H 1.07999 * 120.00727 * 179.76866 * 7 6 5 32 32 H 1.08007 * 120.62055 * 359.97438 * 10 9 8 33 33 H 0.97003 * 119.99998 * 180.02562 * 15 14 12 34 34 H 1.08005 * 120.46558 * 179.76271 * 20 11 10 35 35 H 1.07997 * 119.41955 * 180.02562 * 21 20 11 36 36 H 1.07996 * 120.09181 * 359.95103 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1993 0.4243 0.0048 6 6 5.5701 0.6006 -0.0006 7 6 6.1062 1.8729 -0.0006 8 6 5.2644 2.9835 -0.0006 9 6 5.8380 4.3518 -0.0012 10 6 7.2169 4.5180 0.0044 11 6 7.7422 5.8249 -0.0018 12 6 9.1396 6.0486 -0.0025 13 1 9.5371 6.9826 0.3665 14 6 10.0070 5.0589 -0.4816 15 7 9.5438 4.0868 -1.2229 16 14 11.8257 5.1278 -0.0612 17 1 12.0711 4.3823 1.1995 18 1 12.6116 4.5127 -1.1609 19 1 12.2405 6.5431 0.1120 20 6 6.8334 6.9048 -0.0023 21 6 5.4813 6.6417 -0.0021 22 7 5.0270 5.4033 -0.0020 23 6 3.8830 2.8052 0.0000 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.7848 -0.5730 0.0089 30 1 6.2237 -0.2591 -0.0007 31 1 7.1778 2.0075 -0.0011 32 1 7.8743 3.6610 0.0095 33 1 10.1445 3.4011 -1.5544 34 1 7.1930 7.9232 -0.0031 35 1 4.7809 7.4638 -0.0029 36 1 3.2264 3.6626 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241115138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:28 Heat of formation + Delta-G solvation = 1.240600 kcal Electronic energy + Delta-G solvation = -19167.673074 eV Core-core repulsion = 16195.187538 eV Total energy + Delta-G solvation = -2972.485537 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.80426 -38.46350 -36.87289 -34.19501 -31.98553 -31.68914 -30.56884 -29.37957 -28.01683 -25.99184 -24.01543 -22.49366 -22.15906 -21.02053 -20.07417 -18.09984 -16.97829 -15.99380 -15.85999 -15.58823 -15.24714 -14.55780 -14.32526 -13.93298 -13.34247 -13.31150 -13.07344 -12.76752 -12.63559 -12.56558 -12.51593 -11.69394 -11.63603 -11.42840 -11.36384 -11.06442 -10.81247 -10.61947 -10.51960 -10.30797 -9.86303 -9.49896 -8.85651 -8.09788 -8.01357 -7.85188 -7.20489 -6.89932 -4.65229 1.48409 1.93646 2.73810 2.88311 2.99355 3.02484 3.21890 3.38621 3.80845 4.25425 4.68160 4.86342 4.91452 5.12665 5.18570 5.25989 5.38317 5.47836 5.64567 5.69651 5.83840 5.87403 6.02077 6.03867 6.08397 6.42972 6.66164 6.70282 6.77251 6.81895 6.95123 7.05875 7.09141 7.24037 7.37860 7.41872 7.77440 7.80315 8.04548 8.37751 8.65950 8.68093 9.53064 10.00304 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.027833 B = 0.004420 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.764288 B = 6333.304668 C = 7252.807912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.319 6.319 4 C 0.115 3.885 5 C -0.220 4.220 6 C -0.088 4.088 7 C -0.141 4.141 8 C 0.027 3.973 9 C 0.132 3.868 10 C -0.184 4.184 11 C 0.123 3.877 12 C -0.454 4.454 13 H 0.083 0.917 14 C 0.077 3.923 15 N -0.784 5.784 16 Si 0.913 3.087 17 H -0.266 1.266 18 H -0.276 1.276 19 H -0.261 1.261 20 C -0.272 4.272 21 C 0.104 3.896 22 N -0.563 5.563 23 C -0.125 4.125 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.284 0.716 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.271 -8.762 1.601 11.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.233 6.233 4 C 0.071 3.929 5 C -0.239 4.239 6 C -0.106 4.106 7 C -0.160 4.160 8 C 0.026 3.974 9 C 0.002 3.998 10 C -0.206 4.206 11 C 0.116 3.884 12 C -0.485 4.485 13 H 0.101 0.899 14 C -0.143 4.143 15 N -0.410 5.410 16 Si 0.737 3.263 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.185 1.185 20 C -0.295 4.295 21 C -0.052 4.052 22 N -0.277 5.277 23 C -0.144 4.144 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.141 0.859 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.277 -8.971 1.457 12.293 hybrid contribution 1.919 -0.076 0.023 1.921 sum -6.358 -9.047 1.480 11.156 Atomic orbital electron populations 1.21765 0.93151 1.02443 1.03485 1.22682 0.95500 0.82730 1.01077 1.86058 1.19575 1.28438 1.89245 1.18882 0.81737 0.94146 0.98153 1.21100 0.94470 0.97315 1.11037 1.20750 0.94014 0.96954 0.98909 1.21308 1.00620 0.91436 1.02638 1.18575 0.91595 0.92075 0.95145 1.19217 0.90377 0.90284 0.99945 1.22289 0.93275 0.98865 1.06216 1.17788 0.93444 0.90764 0.86453 1.19627 0.90533 1.01824 1.36478 0.89883 1.25991 1.01954 0.94086 0.92231 1.69760 1.38284 1.10479 1.22432 0.86228 0.81018 0.79909 0.79162 1.19052 1.20109 1.18455 1.21931 0.94021 0.98578 1.14987 1.21825 0.93344 0.92954 0.97048 1.67256 1.39507 0.98654 1.22301 1.20546 0.94957 0.94558 1.04364 0.91588 0.90720 0.91595 0.92370 0.92384 0.86334 0.86186 0.84992 0.84872 0.90440 0.87977 0.85936 0.84352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.16 0.38 -0.95 16 2 C 0.06 0.62 5.46 37.16 0.20 0.83 16 3 O -0.32 -5.06 10.13 -19.43 -0.20 -5.26 16 4 C 0.12 2.03 6.68 -39.27 -0.26 1.77 16 5 C -0.22 -3.44 9.03 -39.38 -0.36 -3.79 16 6 C -0.09 -1.43 10.03 -39.66 -0.40 -1.83 16 7 C -0.14 -2.74 9.41 -39.23 -0.37 -3.11 16 8 C 0.03 0.59 5.87 -104.92 -0.62 -0.03 16 9 C 0.13 3.25 6.73 -83.04 -0.56 2.70 16 10 C -0.18 -4.74 8.14 -38.35 -0.31 -5.05 16 11 C 0.12 3.24 5.61 -106.56 -0.60 2.64 16 12 C -0.45 -11.59 9.12 -37.65 -0.34 -11.94 16 13 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 14 C 0.08 1.85 5.20 -17.34 -0.09 1.76 16 15 N -0.78 -19.27 10.91 55.55 0.61 -18.66 16 16 Si 0.91 17.79 29.59 -169.99 -5.03 12.76 16 17 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 18 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 19 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 20 C -0.27 -6.61 9.90 -38.66 -0.38 -6.99 16 21 C 0.10 2.42 11.15 -17.70 -0.20 2.22 16 22 N -0.56 -13.82 9.39 -9.94 -0.09 -13.91 16 23 C -0.13 -2.54 9.51 -39.09 -0.37 -2.91 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 28 H 0.06 0.59 7.65 -51.93 -0.40 0.19 16 29 H 0.12 1.48 6.28 -52.49 -0.33 1.15 16 30 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.13 2.61 6.17 -52.49 -0.32 2.29 16 32 H 0.13 3.40 4.31 -52.48 -0.23 3.17 16 33 H 0.28 6.31 8.29 -40.82 -0.34 5.97 16 34 H 0.10 2.27 8.06 -52.48 -0.42 1.84 16 35 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 36 H 0.14 2.90 7.53 -52.49 -0.40 2.50 16 LS Contribution 307.87 15.07 4.64 4.64 Total: -1.00 -28.36 307.87 -8.50 -36.86 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -4.16 Total: 8.26 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: -4.27 Total: -24.68 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.51 Total: -32.58 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.20 Total: -5.26 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.36 -8.50 -36.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241115138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.102 kcal (2) G-P(sol) polarization free energy of solvation -28.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds