Wall clock time and date at job start Mon Mar 30 2020 00:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47437 * 2 1 4 4 C 1.35903 * 117.00264 * 180.02562 * 3 2 1 5 5 C 1.38828 * 119.99680 * 359.72218 * 4 3 2 6 6 C 1.38205 * 120.19439 * 179.76610 * 5 4 3 7 7 C 1.38070 * 120.17925 * 0.51466 * 6 5 4 8 8 C 1.39354 * 119.98678 * 359.74041 * 7 6 5 9 9 C 1.48374 * 120.09340 * 180.02562 * 8 7 6 10 10 C 1.38885 * 119.61430 * 359.71186 * 9 8 7 11 11 C 1.40849 * 118.76600 * 179.74317 * 10 9 8 12 12 C 1.41521 * 120.99237 * 180.27960 * 11 10 9 13 13 H 1.08002 * 119.99964 * 203.52678 * 12 11 10 14 14 C 1.40049 * 119.99889 * 23.52520 * 12 11 10 15 15 N 1.30731 * 120.00138 * 17.02469 * 14 12 11 16 16 Si 1.86797 * 119.99812 * 197.02352 * 14 12 11 17 17 H 1.48506 * 109.47306 * 89.99819 * 16 14 12 18 18 H 1.48500 * 109.47100 * 209.99776 * 16 14 12 19 19 H 1.48497 * 109.47532 * 330.00175 * 16 14 12 20 20 C 1.41143 * 118.02083 * 0.51025 * 11 10 9 21 21 C 1.37746 * 119.07192 * 359.74563 * 20 11 10 22 22 N 1.31911 * 121.15511 * 359.97438 * 21 20 11 23 23 C 1.38497 * 119.99324 * 180.02562 * 4 3 2 24 24 H 1.09004 * 109.47263 * 60.00418 * 1 2 3 25 25 H 1.09005 * 109.46671 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47223 * 299.99735 * 1 2 3 27 27 H 1.09006 * 109.46860 * 240.00185 * 2 1 3 28 28 H 1.08998 * 109.47242 * 120.00292 * 2 1 3 29 29 H 1.08001 * 119.90438 * 0.02562 * 5 4 3 30 30 H 1.07993 * 119.91441 * 180.25756 * 6 5 4 31 31 H 1.07999 * 120.00727 * 179.76866 * 7 6 5 32 32 H 1.08007 * 120.62055 * 359.97438 * 10 9 8 33 33 H 0.97003 * 119.99998 * 180.02562 * 15 14 12 34 34 H 1.08005 * 120.46558 * 179.76271 * 20 11 10 35 35 H 1.07997 * 119.41955 * 180.02562 * 21 20 11 36 36 H 1.07996 * 120.09181 * 359.95103 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1993 0.4243 0.0048 6 6 5.5701 0.6006 -0.0006 7 6 6.1062 1.8729 -0.0006 8 6 5.2644 2.9835 -0.0006 9 6 5.8380 4.3518 -0.0012 10 6 7.2169 4.5180 0.0044 11 6 7.7422 5.8249 -0.0018 12 6 9.1396 6.0486 -0.0025 13 1 9.5371 6.9826 0.3665 14 6 10.0070 5.0589 -0.4816 15 7 9.5438 4.0868 -1.2229 16 14 11.8257 5.1278 -0.0612 17 1 12.0711 4.3823 1.1995 18 1 12.6116 4.5127 -1.1609 19 1 12.2405 6.5431 0.1120 20 6 6.8334 6.9048 -0.0023 21 6 5.4813 6.6417 -0.0021 22 7 5.0270 5.4033 -0.0020 23 6 3.8830 2.8052 0.0000 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.7848 -0.5730 0.0089 30 1 6.2237 -0.2591 -0.0007 31 1 7.1778 2.0075 -0.0011 32 1 7.8743 3.6610 0.0095 33 1 10.1445 3.4011 -1.5544 34 1 7.1930 7.9232 -0.0031 35 1 4.7809 7.4638 -0.0029 36 1 3.2264 3.6626 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241115138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:28 Heat of formation + Delta-G solvation = -13.511631 kcal Electronic energy + Delta-G solvation = -19168.312779 eV Core-core repulsion = 16195.187538 eV Total energy + Delta-G solvation = -2973.125241 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.16199 -40.16176 -38.26950 -36.04421 -33.36157 -32.91205 -32.38922 -30.73211 -29.62252 -27.87297 -25.21916 -24.12101 -23.52551 -22.65676 -21.58975 -19.66310 -18.58033 -17.45629 -17.09745 -16.99060 -16.73802 -16.21885 -15.99976 -15.65909 -14.81504 -14.67144 -14.40908 -14.26902 -14.16517 -14.07005 -13.36868 -13.23290 -13.03375 -12.84493 -12.72062 -12.67107 -12.37690 -11.95517 -11.91410 -11.62957 -11.57358 -11.27571 -10.43264 -10.00807 -9.90663 -9.28295 -8.89995 -8.70214 -6.59016 -0.08387 0.51907 0.96674 1.14789 1.38942 1.52621 1.57446 2.17445 2.27670 2.64247 2.96836 3.59244 3.74765 3.89821 4.04421 4.10231 4.21935 4.33057 4.37603 4.41680 4.49486 4.61353 4.79260 4.87675 4.92258 4.96947 4.97308 5.11306 5.21112 5.21848 5.31288 5.39592 5.47681 5.51709 5.73399 5.84163 5.91127 6.17243 6.48007 6.52984 6.76002 6.77197 7.65495 8.22200 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.027833 B = 0.004420 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.764288 B = 6333.304668 C = 7252.807912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.042 3.958 3 O -0.335 6.335 4 C 0.119 3.881 5 C -0.202 4.202 6 C -0.076 4.076 7 C -0.155 4.155 8 C -0.006 4.006 9 C 0.126 3.874 10 C -0.211 4.211 11 C 0.094 3.906 12 C -0.484 4.484 13 H 0.085 0.915 14 C 0.038 3.962 15 N -0.810 5.810 16 Si 0.989 3.011 17 H -0.260 1.260 18 H -0.265 1.265 19 H -0.257 1.257 20 C -0.290 4.290 21 C 0.101 3.899 22 N -0.578 5.578 23 C -0.144 4.144 24 H 0.059 0.941 25 H 0.105 0.895 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.162 0.838 30 H 0.160 0.840 31 H 0.119 0.881 32 H 0.128 0.872 33 H 0.294 0.706 34 H 0.117 0.883 35 H 0.158 0.842 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.360 -11.226 1.732 13.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.250 6.250 4 C 0.074 3.926 5 C -0.221 4.221 6 C -0.093 4.093 7 C -0.174 4.174 8 C -0.007 4.007 9 C -0.004 4.004 10 C -0.233 4.233 11 C 0.086 3.914 12 C -0.515 4.515 13 H 0.103 0.897 14 C -0.179 4.179 15 N -0.435 5.435 16 Si 0.809 3.191 17 H -0.185 1.185 18 H -0.189 1.189 19 H -0.181 1.181 20 C -0.313 4.313 21 C -0.055 4.055 22 N -0.293 5.293 23 C -0.163 4.163 24 H 0.079 0.921 25 H 0.123 0.877 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.179 0.821 30 H 0.177 0.823 31 H 0.137 0.863 32 H 0.146 0.854 33 H 0.105 0.895 34 H 0.135 0.865 35 H 0.175 0.825 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.396 -11.434 1.584 14.274 hybrid contribution 1.779 0.572 -0.044 1.869 sum -6.618 -10.863 1.540 12.813 Atomic orbital electron populations 1.21813 0.91480 1.04268 1.03003 1.23129 0.96936 0.80651 1.02534 1.86063 1.18425 1.31714 1.88829 1.18884 0.83027 0.93602 0.97117 1.21533 0.93838 0.98553 1.08155 1.21148 0.95006 0.96556 0.96633 1.21326 0.99849 0.92450 1.03773 1.18594 0.92662 0.91315 0.98134 1.19719 0.90355 0.91894 0.98481 1.22293 0.93844 0.98666 1.08484 1.18232 0.94513 0.91645 0.87004 1.19917 0.90910 1.02899 1.37731 0.89687 1.26883 1.06527 0.93159 0.91369 1.69807 1.40296 1.10943 1.22480 0.85094 0.74833 0.80035 0.79142 1.18453 1.18934 1.18089 1.22159 0.94439 0.98946 1.15764 1.22380 0.93802 0.93596 0.95677 1.67385 1.39681 0.99175 1.23064 1.20418 0.94190 0.95640 1.06056 0.92147 0.87682 0.92071 0.90854 0.90741 0.82053 0.82291 0.86277 0.85449 0.89458 0.86521 0.82528 0.86239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 10.28 71.98 0.74 -1.44 16 2 C 0.04 0.80 5.46 71.98 0.39 1.19 16 3 O -0.34 -10.08 10.13 -92.45 -0.94 -11.02 16 4 C 0.12 4.02 6.68 22.47 0.15 4.17 16 5 C -0.20 -5.63 9.03 22.40 0.20 -5.42 16 6 C -0.08 -2.26 10.03 22.22 0.22 -2.04 16 7 C -0.15 -6.08 9.41 22.50 0.21 -5.87 16 8 C -0.01 -0.28 5.87 -20.06 -0.12 -0.39 16 9 C 0.13 6.52 6.73 41.86 0.28 6.80 16 10 C -0.21 -11.42 8.14 23.06 0.19 -11.23 16 11 C 0.09 5.15 5.61 -21.12 -0.12 5.03 16 12 C -0.48 -25.55 9.12 23.52 0.21 -25.33 16 13 H 0.09 4.28 7.90 -2.91 -0.02 4.25 16 14 C 0.04 1.86 5.20 85.30 0.44 2.30 16 15 N -0.81 -40.66 10.91 21.84 0.24 -40.42 16 16 Si 0.99 36.34 29.59 68.60 2.03 38.37 16 17 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 18 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 19 H -0.26 -9.23 7.11 99.48 0.71 -8.53 16 20 C -0.29 -14.60 9.90 22.87 0.23 -14.37 16 21 C 0.10 4.80 11.15 84.56 0.94 5.74 16 22 N -0.58 -29.55 9.39 -185.37 -1.74 -31.29 16 23 C -0.14 -5.96 9.51 22.59 0.21 -5.75 16 24 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 1.20 7.67 -2.38 -0.02 1.18 16 28 H 0.07 1.20 7.65 -2.39 -0.02 1.18 16 29 H 0.16 3.11 6.28 -2.91 -0.02 3.09 16 30 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 31 H 0.12 4.90 6.17 -2.91 -0.02 4.88 16 32 H 0.13 6.89 4.31 -2.91 -0.01 6.88 16 33 H 0.29 13.15 8.29 -92.71 -0.77 12.38 16 34 H 0.12 5.32 8.06 -2.91 -0.02 5.30 16 35 H 0.16 6.16 8.06 -2.91 -0.02 6.14 16 36 H 0.12 5.27 7.53 -2.91 -0.02 5.25 16 Total: -1.00 -64.63 307.87 4.88 -59.75 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 1.09 Total: 31.22 kcal Atomic # 6 Polarization: -50.80 SS G_CDS: 4.20 Total: -46.61 kcal Atomic # 7 Polarization: -70.20 SS G_CDS: -1.50 Total: -71.71 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -0.94 Total: -11.02 kcal Atomic # 14 Polarization: 36.34 SS G_CDS: 2.03 Total: 38.37 kcal Total: -64.63 4.88 -59.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241115138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.240 kcal (2) G-P(sol) polarization free energy of solvation -64.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds