Wall clock time and date at job start Mon Mar 30 2020 00:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.47393 * 2 1 4 4 C 1.35898 * 116.99999 * 180.02562 * 3 2 1 5 5 C 1.38924 * 119.98302 * 0.28885 * 4 3 2 6 6 C 1.38289 * 120.25370 * 180.25842 * 5 4 3 7 7 C 1.37964 * 120.21066 * 359.44889 * 6 5 4 8 8 C 1.39703 * 119.95650 * 0.27952 * 7 6 5 9 9 C 1.47821 * 120.12859 * 180.02562 * 8 7 6 10 10 C 1.39669 * 120.65550 * 129.99689 * 9 8 7 11 11 C 1.38390 * 118.48129 * 180.02562 * 10 9 8 12 12 C 1.39065 * 119.72050 * 0.02562 * 11 10 9 13 13 N 1.31277 * 121.33929 * 359.97438 * 12 11 10 14 14 C 1.33703 * 121.63738 * 359.71014 * 13 12 11 15 15 C 1.40812 * 119.93964 * 180.28604 * 14 13 12 16 16 H 1.08002 * 120.00025 * 180.28879 * 15 14 13 17 17 C 1.40154 * 120.00488 * 0.28989 * 15 14 13 18 18 N 1.30699 * 119.99591 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00483 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46980 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47063 * 119.99584 * 19 17 15 22 22 H 1.48501 * 109.47303 * 239.99805 * 19 17 15 23 23 C 1.38397 * 119.98145 * 180.02562 * 4 3 2 24 24 H 1.09001 * 109.47099 * 300.00054 * 1 2 3 25 25 H 1.09004 * 109.46895 * 59.99895 * 1 2 3 26 26 H 1.08995 * 109.47039 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47099 * 239.99946 * 2 1 3 28 28 H 1.08996 * 109.47052 * 120.00383 * 2 1 3 29 29 H 1.08005 * 119.87171 * 359.97438 * 5 4 3 30 30 H 1.08002 * 119.89849 * 179.73060 * 6 5 4 31 31 H 1.07993 * 120.02637 * 180.25541 * 7 6 5 32 32 H 1.08005 * 120.75610 * 0.02562 * 10 9 8 33 33 H 1.07996 * 120.14324 * 179.97438 * 11 10 9 34 34 H 1.07999 * 119.32632 * 179.97438 * 12 11 10 35 35 H 0.96999 * 120.00248 * 179.97438 * 18 17 15 36 36 H 1.08000 * 120.10015 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 4.1996 0.4232 -0.0071 6 6 5.5714 0.5979 -0.0023 7 6 6.1095 1.8682 -0.0024 8 6 5.2671 2.9827 -0.0015 9 6 5.8396 4.3455 -0.0022 10 6 5.4023 5.3012 -0.9221 11 6 5.9694 6.5629 -0.8829 12 6 6.9510 6.8486 0.0599 13 7 7.3552 5.9435 0.9204 14 6 6.8400 4.7098 0.9347 15 6 7.2959 3.7686 1.8776 16 1 6.8837 2.7704 1.8870 17 6 8.2847 4.1271 2.8040 18 7 8.7839 5.3349 2.7923 19 14 8.8891 2.8788 4.0552 20 1 8.1698 1.5944 3.8602 21 1 10.3471 2.6626 3.8742 22 1 8.6305 3.3872 5.4263 23 6 3.8823 2.8043 0.0000 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.7842 -0.5737 -0.0114 30 1 6.2237 -0.2629 -0.0031 31 1 7.1812 2.0011 -0.0028 32 1 4.6390 5.0608 -1.6475 33 1 5.6517 7.3223 -1.5820 34 1 7.3895 7.8353 0.0845 35 1 9.4680 5.5832 3.4336 36 1 3.2257 3.6617 0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241116544.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:42 Heat of formation + Delta-G solvation = 11.683066 kcal Electronic energy + Delta-G solvation = -19527.949537 eV Core-core repulsion = 16555.916820 eV Total energy + Delta-G solvation = -2972.032717 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.68846 -38.34208 -36.73169 -33.73856 -32.03384 -31.80332 -30.34445 -29.27127 -28.12489 -25.80412 -23.83833 -22.42238 -21.77285 -21.13208 -19.98606 -17.63279 -17.48360 -15.93842 -15.73508 -15.54952 -15.11027 -14.59974 -14.31017 -13.99276 -13.33839 -13.13024 -12.98552 -12.70379 -12.58649 -12.13120 -12.09661 -11.65025 -11.59877 -11.27595 -11.16058 -11.06955 -10.96204 -10.58416 -10.35338 -10.29794 -9.80324 -9.46992 -8.64747 -8.08455 -7.71043 -7.64772 -7.29344 -6.50360 -4.58292 1.79872 2.08200 2.71249 2.99241 3.05086 3.10219 3.17755 3.47767 3.88385 4.44333 4.67942 4.90423 4.97314 5.20021 5.34162 5.40914 5.50737 5.73043 5.78281 5.84317 5.91646 6.04622 6.06661 6.10264 6.16560 6.34002 6.49339 6.64448 6.80843 6.83750 6.99902 7.08073 7.21111 7.30673 7.39536 7.58586 7.72940 7.89367 7.98585 8.19355 8.55712 8.85201 10.01603 10.20247 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017291 B = 0.005997 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.904564 B = 4668.121386 C = 5844.552363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.322 6.322 4 C 0.122 3.878 5 C -0.235 4.235 6 C -0.087 4.087 7 C -0.143 4.143 8 C 0.065 3.935 9 C -0.241 4.241 10 C -0.029 4.029 11 C -0.322 4.322 12 C 0.134 3.866 13 N -0.482 5.482 14 C 0.269 3.731 15 C -0.419 4.419 16 H 0.096 0.904 17 C 0.068 3.932 18 N -0.707 5.707 19 Si 0.904 3.096 20 H -0.257 1.257 21 H -0.271 1.271 22 H -0.272 1.272 23 C -0.161 4.161 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.129 0.871 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.274 0.726 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.692 -8.721 -3.017 12.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.236 6.236 4 C 0.078 3.922 5 C -0.254 4.254 6 C -0.105 4.105 7 C -0.161 4.161 8 C 0.065 3.935 9 C -0.246 4.246 10 C -0.054 4.054 11 C -0.345 4.345 12 C -0.035 4.035 13 N -0.194 5.194 14 C 0.146 3.854 15 C -0.448 4.448 16 H 0.114 0.886 17 C -0.159 4.159 18 N -0.327 5.327 19 Si 0.727 3.273 20 H -0.180 1.180 21 H -0.196 1.196 22 H -0.197 1.197 23 C -0.180 4.180 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.147 0.853 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.137 0.863 35 H 0.086 0.914 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.027 -8.283 -2.256 11.094 hybrid contribution -0.327 -0.860 -0.077 0.924 sum -7.354 -9.143 -2.333 11.963 Atomic orbital electron populations 1.21765 0.93279 1.02396 1.03386 1.22653 0.95339 0.82842 1.01074 1.86032 1.19896 1.28373 1.89339 1.18810 0.81425 0.94171 0.97798 1.21002 0.94449 0.97001 1.12965 1.20765 0.93931 0.97094 0.98701 1.21347 1.00561 0.91289 1.02913 1.18501 0.90630 0.93098 0.91316 1.19320 1.07198 0.92849 1.05244 1.20901 0.96016 0.92703 0.95750 1.21227 1.08113 0.97726 1.07403 1.22624 0.92406 0.97884 0.90587 1.68777 1.27194 1.01168 1.22228 1.18511 0.87012 0.89901 0.89959 1.19914 1.15831 0.98800 1.10304 0.88588 1.26170 0.95919 0.95730 0.98074 1.70127 1.17165 1.17506 1.27913 0.86310 0.79230 0.81546 0.80184 1.18041 1.19632 1.19665 1.20535 0.94762 0.94098 1.08631 0.91624 0.91691 0.90766 0.92461 0.92392 0.86725 0.86646 0.85305 0.88438 0.88621 0.86320 0.91444 0.86052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.28 37.16 0.38 -1.01 16 2 C 0.06 0.67 5.46 37.16 0.20 0.87 16 3 O -0.32 -5.26 10.13 -19.42 -0.20 -5.46 16 4 C 0.12 2.22 6.68 -39.27 -0.26 1.95 16 5 C -0.24 -3.89 9.04 -39.31 -0.36 -4.25 16 6 C -0.09 -1.50 10.03 -39.66 -0.40 -1.89 16 7 C -0.14 -2.89 7.57 -39.13 -0.30 -3.18 16 8 C 0.07 1.43 5.02 -104.91 -0.53 0.90 16 9 C -0.24 -5.86 5.53 -104.08 -0.58 -6.44 16 10 C -0.03 -0.66 9.66 -38.99 -0.38 -1.04 16 11 C -0.32 -7.16 10.10 -39.22 -0.40 -7.56 16 12 C 0.13 3.21 11.17 -17.48 -0.20 3.01 16 13 N -0.48 -13.13 7.85 -10.91 -0.09 -13.21 16 14 C 0.27 7.22 6.56 -84.71 -0.56 6.66 16 15 C -0.42 -10.91 7.97 -37.89 -0.30 -11.21 16 16 H 0.10 2.39 5.25 -52.49 -0.28 2.11 16 17 C 0.07 1.69 5.50 -17.31 -0.10 1.59 16 18 N -0.71 -18.40 11.46 55.56 0.64 -17.76 16 19 Si 0.90 18.31 29.56 -169.99 -5.02 13.29 16 20 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 21 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 23 C -0.16 -3.26 9.49 -39.01 -0.37 -3.63 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.62 7.64 -51.93 -0.40 0.22 16 28 H 0.06 0.65 7.67 -51.93 -0.40 0.25 16 29 H 0.11 1.55 6.28 -52.48 -0.33 1.22 16 30 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.13 2.67 7.25 -52.49 -0.38 2.29 16 32 H 0.10 1.96 8.06 -52.48 -0.42 1.54 16 33 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 35 H 0.27 6.43 8.29 -40.82 -0.34 6.09 16 36 H 0.12 2.41 8.05 -52.49 -0.42 1.99 16 LS Contribution 307.47 15.07 4.63 4.63 Total: -1.00 -29.10 307.47 -8.45 -37.56 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -4.30 Total: 6.17 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -4.12 Total: -25.21 kcal Atomic # 7 Polarization: -31.53 SS G_CDS: 0.55 Total: -30.97 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.20 Total: -5.46 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.02 Total: 13.29 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.10 -8.45 -37.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241116544.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.239 kcal (2) G-P(sol) polarization free energy of solvation -29.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds