Wall clock time and date at job start Mon Mar 30 2020 00:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.47393 * 2 1 4 4 C 1.35898 * 116.99999 * 180.02562 * 3 2 1 5 5 C 1.38924 * 119.98302 * 0.28885 * 4 3 2 6 6 C 1.38289 * 120.25370 * 180.25842 * 5 4 3 7 7 C 1.37964 * 120.21066 * 359.44889 * 6 5 4 8 8 C 1.39703 * 119.95650 * 0.27952 * 7 6 5 9 9 C 1.47821 * 120.12859 * 180.02562 * 8 7 6 10 10 C 1.39669 * 120.65550 * 129.99689 * 9 8 7 11 11 C 1.38390 * 118.48129 * 180.02562 * 10 9 8 12 12 C 1.39065 * 119.72050 * 0.02562 * 11 10 9 13 13 N 1.31277 * 121.33929 * 359.97438 * 12 11 10 14 14 C 1.33703 * 121.63738 * 359.71014 * 13 12 11 15 15 C 1.40812 * 119.93964 * 180.28604 * 14 13 12 16 16 H 1.08002 * 120.00025 * 180.28879 * 15 14 13 17 17 C 1.40154 * 120.00488 * 0.28989 * 15 14 13 18 18 N 1.30699 * 119.99591 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00483 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46980 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47063 * 119.99584 * 19 17 15 22 22 H 1.48501 * 109.47303 * 239.99805 * 19 17 15 23 23 C 1.38397 * 119.98145 * 180.02562 * 4 3 2 24 24 H 1.09001 * 109.47099 * 300.00054 * 1 2 3 25 25 H 1.09004 * 109.46895 * 59.99895 * 1 2 3 26 26 H 1.08995 * 109.47039 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47099 * 239.99946 * 2 1 3 28 28 H 1.08996 * 109.47052 * 120.00383 * 2 1 3 29 29 H 1.08005 * 119.87171 * 359.97438 * 5 4 3 30 30 H 1.08002 * 119.89849 * 179.73060 * 6 5 4 31 31 H 1.07993 * 120.02637 * 180.25541 * 7 6 5 32 32 H 1.08005 * 120.75610 * 0.02562 * 10 9 8 33 33 H 1.07996 * 120.14324 * 179.97438 * 11 10 9 34 34 H 1.07999 * 119.32632 * 179.97438 * 12 11 10 35 35 H 0.96999 * 120.00248 * 179.97438 * 18 17 15 36 36 H 1.08000 * 120.10015 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 4.1996 0.4232 -0.0071 6 6 5.5714 0.5979 -0.0023 7 6 6.1095 1.8682 -0.0024 8 6 5.2671 2.9827 -0.0015 9 6 5.8396 4.3455 -0.0022 10 6 5.4023 5.3012 -0.9221 11 6 5.9694 6.5629 -0.8829 12 6 6.9510 6.8486 0.0599 13 7 7.3552 5.9435 0.9204 14 6 6.8400 4.7098 0.9347 15 6 7.2959 3.7686 1.8776 16 1 6.8837 2.7704 1.8870 17 6 8.2847 4.1271 2.8040 18 7 8.7839 5.3349 2.7923 19 14 8.8891 2.8788 4.0552 20 1 8.1698 1.5944 3.8602 21 1 10.3471 2.6626 3.8742 22 1 8.6305 3.3872 5.4263 23 6 3.8823 2.8043 0.0000 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.7842 -0.5737 -0.0114 30 1 6.2237 -0.2629 -0.0031 31 1 7.1812 2.0011 -0.0028 32 1 4.6390 5.0608 -1.6475 33 1 5.6517 7.3223 -1.5820 34 1 7.3895 7.8353 0.0845 35 1 9.4680 5.5832 3.4336 36 1 3.2257 3.6617 0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241116544.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:42 Heat of formation + Delta-G solvation = -3.504307 kcal Electronic energy + Delta-G solvation = -19528.608111 eV Core-core repulsion = 16555.916820 eV Total energy + Delta-G solvation = -2972.691291 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.06974 -40.03761 -38.17223 -35.57893 -33.61254 -32.86144 -32.16528 -30.68505 -29.69782 -27.63877 -25.07413 -23.90848 -23.29845 -22.81174 -21.46128 -19.42737 -18.90486 -17.49968 -16.96433 -16.91557 -16.59410 -16.25799 -16.02842 -15.65676 -14.75020 -14.43786 -14.28340 -14.17158 -13.95630 -13.73419 -13.35162 -13.06063 -12.97656 -12.86782 -12.78155 -12.59538 -12.37465 -12.04689 -11.80797 -11.60408 -11.40358 -11.26350 -10.34124 -9.85025 -9.52971 -9.27654 -8.90383 -8.33307 -6.48996 0.25173 0.62061 0.95338 1.23275 1.38836 1.51893 1.54189 2.20496 2.33225 2.81855 2.96754 3.90748 3.97530 4.01505 4.10188 4.20594 4.26915 4.32058 4.41688 4.48618 4.55298 4.55930 4.72841 4.78854 4.93003 4.97195 4.99937 5.17697 5.20065 5.23135 5.38247 5.46958 5.59921 5.63279 5.76488 5.97192 6.02156 6.17153 6.30542 6.58806 6.69772 6.96321 8.14942 8.40174 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017291 B = 0.005997 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.904564 B = 4668.121386 C = 5844.552363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.043 3.957 3 O -0.337 6.337 4 C 0.125 3.875 5 C -0.222 4.222 6 C -0.078 4.078 7 C -0.160 4.160 8 C 0.039 3.961 9 C -0.249 4.249 10 C -0.042 4.042 11 C -0.314 4.314 12 C 0.111 3.889 13 N -0.520 5.520 14 C 0.237 3.763 15 C -0.448 4.448 16 H 0.099 0.901 17 C 0.024 3.976 18 N -0.749 5.749 19 Si 0.978 3.022 20 H -0.252 1.252 21 H -0.262 1.262 22 H -0.267 1.267 23 C -0.178 4.178 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.104 0.896 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.140 0.860 35 H 0.280 0.720 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.972 -11.447 -3.220 14.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.252 6.252 4 C 0.080 3.920 5 C -0.240 4.240 6 C -0.095 4.095 7 C -0.179 4.179 8 C 0.038 3.962 9 C -0.253 4.253 10 C -0.066 4.066 11 C -0.336 4.336 12 C -0.055 4.055 13 N -0.233 5.233 14 C 0.114 3.886 15 C -0.478 4.478 16 H 0.117 0.883 17 C -0.198 4.198 18 N -0.370 5.370 19 Si 0.798 3.202 20 H -0.175 1.175 21 H -0.187 1.187 22 H -0.192 1.192 23 C -0.197 4.197 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.122 0.878 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.172 0.828 30 H 0.168 0.832 31 H 0.131 0.869 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.157 0.843 35 H 0.091 0.909 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.331 -10.993 -2.487 14.016 hybrid contribution -0.114 -0.061 -0.142 0.192 sum -8.445 -11.054 -2.628 14.157 Atomic orbital electron populations 1.21808 0.91428 1.04228 1.03016 1.23084 0.96902 0.80821 1.02326 1.86036 1.18692 1.31508 1.88921 1.18842 0.82683 0.93751 0.96768 1.21406 0.93864 0.98278 1.10484 1.21120 0.94918 0.96782 0.96728 1.21310 0.99720 0.92403 1.04428 1.18477 0.91595 0.92430 0.93667 1.19674 1.06417 0.94639 1.04614 1.21252 0.96608 0.92749 0.95984 1.21566 1.06781 0.98360 1.06919 1.23069 0.93224 0.98431 0.90824 1.68711 1.28612 1.02031 1.23911 1.18953 0.88222 0.90279 0.91162 1.20162 1.17159 0.99060 1.11393 0.88302 1.27055 0.95541 0.97614 0.99640 1.70217 1.18112 1.19476 1.29209 0.85207 0.78877 0.78843 0.77260 1.17487 1.18660 1.19180 1.20485 0.94059 0.95275 1.09833 0.92187 0.91928 0.87790 0.90877 0.91263 0.82833 0.83157 0.86908 0.86123 0.85372 0.84258 0.90895 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 10.28 71.98 0.74 -1.51 16 2 C 0.04 0.87 5.46 71.98 0.39 1.26 16 3 O -0.34 -10.28 10.13 -92.41 -0.94 -11.21 16 4 C 0.12 4.29 6.68 22.47 0.15 4.44 16 5 C -0.22 -6.58 9.04 22.45 0.20 -6.38 16 6 C -0.08 -2.48 10.03 22.22 0.22 -2.26 16 7 C -0.16 -6.48 7.57 22.56 0.17 -6.31 16 8 C 0.04 1.74 5.02 -20.05 -0.10 1.64 16 9 C -0.25 -12.49 5.53 -19.51 -0.11 -12.60 16 10 C -0.04 -1.91 9.66 22.65 0.22 -1.69 16 11 C -0.31 -13.96 10.10 22.50 0.23 -13.73 16 12 C 0.11 5.46 11.17 84.97 0.95 6.41 16 13 N -0.52 -29.52 7.85 -188.42 -1.48 -31.00 16 14 C 0.24 13.29 6.56 40.37 0.26 13.56 16 15 C -0.45 -24.22 7.97 23.37 0.19 -24.04 16 16 H 0.10 5.09 5.25 -2.91 -0.02 5.07 16 17 C 0.02 1.23 5.50 85.33 0.47 1.70 16 18 N -0.75 -40.44 11.46 21.86 0.25 -40.19 16 19 Si 0.98 38.10 29.56 68.60 2.03 40.13 16 20 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 21 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 22 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 23 C -0.18 -7.20 9.49 22.64 0.21 -6.98 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 1.26 7.64 -2.39 -0.02 1.24 16 28 H 0.07 1.25 7.67 -2.39 -0.02 1.23 16 29 H 0.15 3.34 6.28 -2.91 -0.02 3.32 16 30 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 31 H 0.11 4.84 7.25 -2.91 -0.02 4.81 16 32 H 0.12 4.83 8.06 -2.91 -0.02 4.80 16 33 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 34 H 0.14 5.99 8.06 -2.91 -0.02 5.97 16 35 H 0.28 13.60 8.29 -92.71 -0.77 12.84 16 36 H 0.11 4.61 8.05 -2.91 -0.02 4.59 16 Total: -1.00 -65.83 307.47 5.15 -60.68 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 1.09 Total: 28.08 kcal Atomic # 6 Polarization: -50.68 SS G_CDS: 4.20 Total: -46.48 kcal Atomic # 7 Polarization: -69.96 SS G_CDS: -1.23 Total: -71.19 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: -0.94 Total: -11.21 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.13 kcal Total: -65.83 5.15 -60.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241116544.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.175 kcal (2) G-P(sol) polarization free energy of solvation -65.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds