Wall clock time and date at job start Mon Mar 30 2020 00:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.47077 * 2 1 4 4 C 1.35904 * 117.00140 * 180.02562 * 3 2 1 5 5 C 1.38830 * 119.99462 * 0.02562 * 4 3 2 6 6 C 1.38216 * 120.18855 * 179.97438 * 5 4 3 7 7 C 1.38068 * 120.17814 * 359.78915 * 6 5 4 8 8 C 1.39345 * 119.99235 * 0.45006 * 7 6 5 9 9 C 1.48389 * 120.09695 * 179.80968 * 8 7 6 10 10 C 1.40031 * 120.82335 * 179.71963 * 9 8 7 11 11 C 1.38503 * 119.42582 * 180.02562 * 10 9 8 12 12 N 1.31480 * 121.14435 * 0.02562 * 11 10 9 13 13 C 1.33640 * 121.79468 * 359.97438 * 12 11 10 14 14 C 1.41433 * 119.78186 * 180.02562 * 13 12 11 15 15 H 1.07994 * 119.99945 * 173.69311 * 14 13 12 16 16 C 1.40027 * 119.99649 * 353.68943 * 14 13 12 17 17 N 1.30744 * 120.00415 * 6.28897 * 16 14 13 18 18 Si 1.86802 * 119.99920 * 186.28942 * 16 14 13 19 19 H 1.48500 * 109.47386 * 94.98440 * 18 16 14 20 20 H 1.48502 * 109.47127 * 214.98572 * 18 16 14 21 21 H 1.48501 * 109.46934 * 334.98108 * 18 16 14 22 22 C 1.39307 * 120.82120 * 359.73912 * 9 8 7 23 23 C 1.38506 * 119.99815 * 179.97438 * 4 3 2 24 24 H 1.08997 * 109.46890 * 300.00283 * 1 2 3 25 25 H 1.09003 * 109.46338 * 60.00551 * 1 2 3 26 26 H 1.09000 * 109.46753 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47587 * 239.99957 * 2 1 3 28 28 H 1.09004 * 109.47043 * 119.99223 * 2 1 3 29 29 H 1.07998 * 119.90466 * 0.02562 * 5 4 3 30 30 H 1.08003 * 119.90660 * 180.02562 * 6 5 4 31 31 H 1.08002 * 120.00491 * 180.24892 * 7 6 5 32 32 H 1.08002 * 120.28525 * 359.97438 * 10 9 8 33 33 H 1.08003 * 119.43031 * 179.72724 * 11 10 9 34 34 H 0.96995 * 120.00245 * 180.02562 * 17 16 14 35 35 H 1.08006 * 120.58139 * 359.96213 * 22 9 8 36 36 H 1.08008 * 120.08797 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5254 -0.0005 5 6 4.1993 0.4244 -0.0016 6 6 5.5701 0.6009 -0.0027 7 6 6.1061 1.8733 -0.0071 8 6 5.2643 2.9837 -0.0010 9 6 5.8379 4.3523 -0.0015 10 6 5.0061 5.4788 -0.0013 11 6 5.5725 6.7428 -0.0023 12 7 6.8774 6.9032 -0.0039 13 6 7.7149 5.8617 -0.0042 14 6 9.1117 6.0835 -0.0054 15 1 9.7908 5.2501 0.0971 16 6 9.6140 7.3837 -0.1397 17 7 8.7961 8.4037 -0.1402 18 14 11.4527 7.6608 -0.3180 19 1 11.8014 7.7575 -1.7582 20 1 11.8322 8.9216 0.3689 21 1 12.1863 6.5238 0.2938 22 6 7.2171 4.5481 -0.0026 23 6 3.8830 2.8053 -0.0011 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8935 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 3.7848 -0.5729 -0.0024 30 1 6.2238 -0.2589 -0.0039 31 1 7.1777 2.0079 -0.0120 32 1 3.9323 5.3630 -0.0012 33 1 4.9310 7.6117 -0.0067 34 1 9.1440 9.3043 -0.2336 35 1 7.8919 3.7048 -0.0024 36 1 3.2263 3.6628 -0.0015 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241116828.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:52 Heat of formation + Delta-G solvation = 11.976112 kcal Electronic energy + Delta-G solvation = -18924.914730 eV Core-core repulsion = 15952.894720 eV Total energy + Delta-G solvation = -2972.020010 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.98087 -38.39299 -37.04395 -33.71321 -32.21729 -32.01848 -30.22543 -29.37463 -28.43538 -25.73875 -24.15958 -22.59753 -22.35029 -20.79219 -20.25655 -18.21987 -16.82606 -16.13092 -16.12706 -15.68578 -15.38021 -14.49476 -14.30954 -13.82508 -13.50359 -13.42120 -13.21867 -12.83362 -12.59781 -12.44137 -12.28988 -11.83461 -11.79176 -11.33786 -11.23820 -11.19915 -10.79405 -10.73710 -10.64800 -10.26861 -9.83240 -9.54966 -9.10223 -8.07974 -7.68032 -7.59482 -7.49776 -6.43083 -4.54519 1.33161 1.73065 2.74050 3.04029 3.08357 3.11653 3.19228 3.22984 3.93574 4.22828 4.74945 4.77307 4.79125 5.00157 5.07426 5.11780 5.31711 5.43003 5.59470 5.63389 5.71803 5.82653 5.86779 5.89501 6.07583 6.16247 6.45927 6.56921 6.60884 6.67017 6.77682 6.96066 6.99896 7.14357 7.30618 7.49786 7.59140 7.70215 7.97663 8.20567 8.63144 8.88561 10.08535 10.30003 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.041456 B = 0.003659 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.248711 B = 7650.057584 C = 8300.202692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.319 6.319 4 C 0.124 3.876 5 C -0.223 4.223 6 C -0.083 4.083 7 C -0.149 4.149 8 C 0.022 3.978 9 C -0.006 4.006 10 C -0.300 4.300 11 C 0.124 3.876 12 N -0.482 5.482 13 C 0.253 3.747 14 C -0.432 4.432 15 H 0.084 0.916 16 C 0.069 3.931 17 N -0.716 5.716 18 Si 0.908 3.092 19 H -0.269 1.269 20 H -0.276 1.276 21 H -0.261 1.261 22 C -0.247 4.247 23 C -0.146 4.146 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.099 0.901 33 H 0.121 0.879 34 H 0.273 0.727 35 H 0.104 0.896 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.748 -13.033 -0.044 15.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.233 6.233 4 C 0.080 3.920 5 C -0.242 4.242 6 C -0.101 4.101 7 C -0.168 4.168 8 C 0.021 3.979 9 C -0.012 4.012 10 C -0.323 4.323 11 C -0.041 4.041 12 N -0.195 5.195 13 C 0.129 3.871 14 C -0.464 4.464 15 H 0.102 0.898 16 C -0.156 4.156 17 N -0.337 5.337 18 Si 0.732 3.268 19 H -0.195 1.195 20 H -0.201 1.201 21 H -0.185 1.185 22 C -0.270 4.270 23 C -0.165 4.165 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.146 0.854 32 H 0.117 0.883 33 H 0.138 0.862 34 H 0.084 0.916 35 H 0.122 0.878 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.522 -11.812 -0.052 14.565 hybrid contribution 0.433 -0.999 -0.108 1.094 sum -8.089 -12.810 -0.160 15.151 Atomic orbital electron populations 1.21771 0.93008 1.02574 1.03532 1.22711 0.95616 0.82499 1.01171 1.86057 1.19453 1.28726 1.89074 1.18844 0.81835 0.94063 0.97302 1.21113 0.94453 0.97421 1.11214 1.20807 0.94098 0.97044 0.98159 1.21259 1.00383 0.91587 1.03523 1.18845 0.91526 0.93357 0.94131 1.18554 0.93557 0.90037 0.99068 1.21381 0.98019 0.93538 1.19389 1.22468 0.93041 0.94416 0.94199 1.68712 1.01375 1.32797 1.16576 1.18561 0.93725 0.86310 0.88525 1.19618 0.90649 0.93516 1.42589 0.89770 1.26068 0.99899 0.95980 0.93694 1.70134 1.35767 0.99281 1.28513 0.86315 0.82456 0.78846 0.79221 1.19456 1.20094 1.18495 1.21884 0.93141 0.98029 1.13975 1.20522 0.94807 0.94659 1.06480 0.91544 0.91552 0.90605 0.92275 0.92274 0.86165 0.86097 0.85367 0.88323 0.86195 0.91582 0.87792 0.84964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.80 16 2 C 0.06 0.56 5.46 37.16 0.20 0.76 16 3 O -0.32 -4.58 10.13 -19.44 -0.20 -4.78 16 4 C 0.12 1.97 6.68 -39.26 -0.26 1.71 16 5 C -0.22 -3.13 9.03 -39.37 -0.36 -3.49 16 6 C -0.08 -1.20 10.03 -39.65 -0.40 -1.60 16 7 C -0.15 -2.57 9.44 -39.23 -0.37 -2.95 16 8 C 0.02 0.42 5.87 -104.92 -0.62 -0.19 16 9 C -0.01 -0.14 5.90 -104.65 -0.62 -0.76 16 10 C -0.30 -6.82 9.51 -38.81 -0.37 -7.19 16 11 C 0.12 3.02 11.17 -17.60 -0.20 2.83 16 12 N -0.48 -13.37 7.88 -11.20 -0.09 -13.46 16 13 C 0.25 6.94 6.55 -85.02 -0.56 6.38 16 14 C -0.43 -11.53 9.14 -37.70 -0.34 -11.87 16 15 H 0.08 2.09 7.85 -52.49 -0.41 1.67 16 16 C 0.07 1.75 5.49 -17.34 -0.10 1.66 16 17 N -0.72 -19.11 11.49 55.55 0.64 -18.47 16 18 Si 0.91 18.53 29.56 -169.99 -5.03 13.50 16 19 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 20 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 22 C -0.25 -6.05 9.22 -38.34 -0.35 -6.41 16 23 C -0.15 -2.63 9.39 -39.10 -0.37 -2.99 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.54 7.65 -51.93 -0.40 0.14 16 28 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 29 H 0.12 1.33 6.28 -52.49 -0.33 1.00 16 30 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 31 H 0.13 2.14 6.28 -52.49 -0.33 1.81 16 32 H 0.10 1.98 6.32 -52.49 -0.33 1.65 16 33 H 0.12 2.59 8.06 -52.48 -0.42 2.17 16 34 H 0.27 6.58 8.29 -40.82 -0.34 6.24 16 35 H 0.10 2.32 6.33 -52.48 -0.33 1.99 16 36 H 0.13 2.34 6.28 -52.48 -0.33 2.01 16 LS Contribution 307.05 15.07 4.63 4.63 Total: -1.00 -30.00 307.05 -8.47 -38.47 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -4.11 Total: 5.03 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -4.32 Total: -24.91 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: 0.55 Total: -31.93 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.20 Total: -4.78 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.00 -8.47 -38.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241116828.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.448 kcal (2) G-P(sol) polarization free energy of solvation -30.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds