Wall clock time and date at job start Mon Mar 30 2020 00:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.47077 * 2 1 4 4 C 1.35904 * 117.00140 * 180.02562 * 3 2 1 5 5 C 1.38830 * 119.99462 * 0.02562 * 4 3 2 6 6 C 1.38216 * 120.18855 * 179.97438 * 5 4 3 7 7 C 1.38068 * 120.17814 * 359.78915 * 6 5 4 8 8 C 1.39345 * 119.99235 * 0.45006 * 7 6 5 9 9 C 1.48389 * 120.09695 * 179.80968 * 8 7 6 10 10 C 1.40031 * 120.82335 * 179.71963 * 9 8 7 11 11 C 1.38503 * 119.42582 * 180.02562 * 10 9 8 12 12 N 1.31480 * 121.14435 * 0.02562 * 11 10 9 13 13 C 1.33640 * 121.79468 * 359.97438 * 12 11 10 14 14 C 1.41433 * 119.78186 * 180.02562 * 13 12 11 15 15 H 1.07994 * 119.99945 * 173.69311 * 14 13 12 16 16 C 1.40027 * 119.99649 * 353.68943 * 14 13 12 17 17 N 1.30744 * 120.00415 * 6.28897 * 16 14 13 18 18 Si 1.86802 * 119.99920 * 186.28942 * 16 14 13 19 19 H 1.48500 * 109.47386 * 94.98440 * 18 16 14 20 20 H 1.48502 * 109.47127 * 214.98572 * 18 16 14 21 21 H 1.48501 * 109.46934 * 334.98108 * 18 16 14 22 22 C 1.39307 * 120.82120 * 359.73912 * 9 8 7 23 23 C 1.38506 * 119.99815 * 179.97438 * 4 3 2 24 24 H 1.08997 * 109.46890 * 300.00283 * 1 2 3 25 25 H 1.09003 * 109.46338 * 60.00551 * 1 2 3 26 26 H 1.09000 * 109.46753 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47587 * 239.99957 * 2 1 3 28 28 H 1.09004 * 109.47043 * 119.99223 * 2 1 3 29 29 H 1.07998 * 119.90466 * 0.02562 * 5 4 3 30 30 H 1.08003 * 119.90660 * 180.02562 * 6 5 4 31 31 H 1.08002 * 120.00491 * 180.24892 * 7 6 5 32 32 H 1.08002 * 120.28525 * 359.97438 * 10 9 8 33 33 H 1.08003 * 119.43031 * 179.72724 * 11 10 9 34 34 H 0.96995 * 120.00245 * 180.02562 * 17 16 14 35 35 H 1.08006 * 120.58139 * 359.96213 * 22 9 8 36 36 H 1.08008 * 120.08797 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5254 -0.0005 5 6 4.1993 0.4244 -0.0016 6 6 5.5701 0.6009 -0.0027 7 6 6.1061 1.8733 -0.0071 8 6 5.2643 2.9837 -0.0010 9 6 5.8379 4.3523 -0.0015 10 6 5.0061 5.4788 -0.0013 11 6 5.5725 6.7428 -0.0023 12 7 6.8774 6.9032 -0.0039 13 6 7.7149 5.8617 -0.0042 14 6 9.1117 6.0835 -0.0054 15 1 9.7908 5.2501 0.0971 16 6 9.6140 7.3837 -0.1397 17 7 8.7961 8.4037 -0.1402 18 14 11.4527 7.6608 -0.3180 19 1 11.8014 7.7575 -1.7582 20 1 11.8322 8.9216 0.3689 21 1 12.1863 6.5238 0.2938 22 6 7.2171 4.5481 -0.0026 23 6 3.8830 2.8053 -0.0011 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8935 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 3.7848 -0.5729 -0.0024 30 1 6.2238 -0.2589 -0.0039 31 1 7.1777 2.0079 -0.0120 32 1 3.9323 5.3630 -0.0012 33 1 4.9310 7.6117 -0.0067 34 1 9.1440 9.3043 -0.2336 35 1 7.8919 3.7048 -0.0024 36 1 3.2263 3.6628 -0.0015 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241116828.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:52 Heat of formation + Delta-G solvation = -4.201370 kcal Electronic energy + Delta-G solvation = -18925.616238 eV Core-core repulsion = 15952.894720 eV Total energy + Delta-G solvation = -2972.721518 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.18781 -40.07058 -38.37455 -35.56198 -33.76763 -32.93394 -32.01456 -30.69782 -29.90092 -27.64152 -25.28248 -24.09102 -23.65454 -22.41456 -21.70619 -19.66107 -18.45218 -17.46096 -17.29644 -17.01322 -16.79654 -16.09682 -15.92559 -15.52233 -14.86595 -14.51464 -14.41383 -14.37537 -14.08407 -13.80907 -13.37024 -13.10876 -13.06985 -12.86247 -12.79988 -12.58176 -12.43029 -12.10846 -11.73114 -11.69353 -11.53639 -11.25550 -10.73358 -9.62319 -9.53409 -9.39285 -9.00217 -8.31700 -6.53587 -0.08264 0.48302 0.87432 1.37606 1.40890 1.55681 1.56453 2.22520 2.25100 2.75479 2.98815 3.76828 3.85479 3.93253 4.08406 4.08820 4.17760 4.23354 4.34625 4.36840 4.40854 4.56107 4.62722 4.81492 4.88685 4.94050 4.96178 5.07658 5.19804 5.20965 5.31210 5.40546 5.46238 5.51811 5.60035 5.78838 5.95876 6.12612 6.26743 6.49072 6.71356 6.92833 8.15642 8.44601 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.041456 B = 0.003659 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.248711 B = 7650.057584 C = 8300.202692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.043 3.957 3 O -0.335 6.335 4 C 0.123 3.877 5 C -0.207 4.207 6 C -0.074 4.074 7 C -0.160 4.160 8 C -0.011 4.011 9 C -0.003 4.003 10 C -0.300 4.300 11 C 0.106 3.894 12 N -0.521 5.521 13 C 0.222 3.778 14 C -0.468 4.468 15 H 0.091 0.909 16 C 0.022 3.978 17 N -0.758 5.758 18 Si 0.990 3.010 19 H -0.264 1.264 20 H -0.268 1.268 21 H -0.253 1.253 22 C -0.267 4.267 23 C -0.160 4.160 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.159 0.841 30 H 0.160 0.840 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.140 0.860 34 H 0.279 0.721 35 H 0.117 0.883 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.149 -16.029 -0.133 18.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 O -0.250 6.250 4 C 0.077 3.923 5 C -0.225 4.225 6 C -0.091 4.091 7 C -0.178 4.178 8 C -0.011 4.011 9 C -0.009 4.009 10 C -0.323 4.323 11 C -0.058 4.058 12 N -0.234 5.234 13 C 0.097 3.903 14 C -0.499 4.499 15 H 0.109 0.891 16 C -0.199 4.199 17 N -0.380 5.380 18 Si 0.810 3.190 19 H -0.189 1.189 20 H -0.192 1.192 21 H -0.176 1.176 22 C -0.289 4.289 23 C -0.179 4.179 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.122 0.878 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.177 0.823 30 H 0.177 0.823 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.158 0.842 34 H 0.090 0.910 35 H 0.134 0.866 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.960 -14.826 -0.137 17.323 hybrid contribution 0.293 -0.276 -0.072 0.408 sum -8.667 -15.101 -0.210 17.413 Atomic orbital electron populations 1.21816 0.91546 1.04257 1.03032 1.23120 0.96882 0.80619 1.02532 1.86059 1.18476 1.31705 1.88737 1.18885 0.82997 0.93715 0.96666 1.21559 0.94051 0.98594 1.08304 1.21204 0.94938 0.96864 0.96124 1.21384 1.00188 0.92361 1.03913 1.18729 0.92590 0.92185 0.97600 1.18939 0.93070 0.92140 0.96794 1.21680 0.99375 0.93074 1.18122 1.22893 0.92659 0.96046 0.94199 1.68658 1.02660 1.33781 1.18338 1.19024 0.94495 0.87496 0.89261 1.19998 0.90931 0.94751 1.44259 0.89054 1.27046 1.05178 0.95104 0.92581 1.70237 1.38301 0.99928 1.29550 0.85090 0.75603 0.79033 0.79323 1.18859 1.19231 1.17596 1.22011 0.94368 0.97470 1.15089 1.20499 0.94144 0.95894 1.07389 0.92071 0.92083 0.87795 0.90804 0.90800 0.82317 0.82263 0.85612 0.85901 0.84236 0.90999 0.86551 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 10.28 71.98 0.74 -1.14 16 2 C 0.04 0.70 5.46 71.98 0.39 1.09 16 3 O -0.33 -8.84 10.13 -92.47 -0.94 -9.78 16 4 C 0.12 3.61 6.68 22.48 0.15 3.76 16 5 C -0.21 -4.96 9.03 22.41 0.20 -4.76 16 6 C -0.07 -1.86 10.03 22.22 0.22 -1.64 16 7 C -0.16 -5.33 9.44 22.50 0.21 -5.12 16 8 C -0.01 -0.42 5.87 -20.06 -0.12 -0.54 16 9 C 0.00 -0.15 5.90 -19.88 -0.12 -0.27 16 10 C -0.30 -13.98 9.51 22.77 0.22 -13.76 16 11 C 0.11 5.36 11.17 84.81 0.95 6.31 16 12 N -0.52 -30.30 7.88 -189.36 -1.49 -31.79 16 13 C 0.22 12.73 6.55 40.20 0.26 13.00 16 14 C -0.47 -25.95 9.14 23.49 0.21 -25.73 16 15 H 0.09 4.69 7.85 -2.91 -0.02 4.66 16 16 C 0.02 1.16 5.49 85.29 0.47 1.63 16 17 N -0.76 -41.99 11.49 21.84 0.25 -41.74 16 18 Si 0.99 38.61 29.56 68.60 2.03 40.64 16 19 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 20 H -0.27 -9.97 7.11 99.48 0.71 -9.27 16 21 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 22 C -0.27 -13.58 9.22 23.07 0.21 -13.37 16 23 C -0.16 -5.68 9.39 22.58 0.21 -5.47 16 24 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 1.01 7.65 -2.39 -0.02 0.99 16 28 H 0.07 1.01 7.66 -2.38 -0.02 0.99 16 29 H 0.16 2.58 6.28 -2.91 -0.02 2.56 16 30 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 31 H 0.13 4.15 6.28 -2.91 -0.02 4.13 16 32 H 0.12 4.99 6.32 -2.91 -0.02 4.98 16 33 H 0.14 6.25 8.06 -2.91 -0.02 6.22 16 34 H 0.28 13.92 8.29 -92.71 -0.77 13.15 16 35 H 0.12 5.40 6.33 -2.91 -0.02 5.38 16 36 H 0.12 4.44 6.28 -2.91 -0.02 4.42 16 Total: -1.00 -68.41 307.05 5.17 -63.24 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 1.10 Total: 25.42 kcal Atomic # 6 Polarization: -50.22 SS G_CDS: 4.22 Total: -46.00 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -1.24 Total: -73.53 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.94 Total: -9.78 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -68.41 5.17 -63.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241116828.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.039 kcal (2) G-P(sol) polarization free energy of solvation -68.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds